Wall clock time and date at job start Mon Mar 30 2020 07:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.08996 * 108.57381 * 180.02562 * 5 2 1 7 7 C 1.51791 * 108.61709 * 297.94130 * 5 2 1 8 8 C 1.53100 * 110.72056 * 188.05892 * 7 5 2 9 9 C 1.51417 * 108.39371 * 274.90100 * 8 7 5 10 10 O 1.21280 * 119.89626 * 251.23763 * 9 8 7 11 11 N 1.33377 * 120.21779 * 71.21100 * 9 8 7 12 12 C 1.46501 * 119.78802 * 180.30728 * 11 9 8 13 13 C 1.52994 * 109.46960 * 270.02624 * 12 11 9 14 14 C 1.50706 * 109.47109 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99768 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00265 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46949 * 89.99970 * 18 16 14 20 20 H 1.48493 * 109.47527 * 210.00337 * 18 16 14 21 21 H 1.48504 * 109.46789 * 330.00270 * 18 16 14 22 22 C 1.47194 * 120.42302 * 0.33657 * 11 9 8 23 23 C 1.51784 * 108.61314 * 62.06322 * 5 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 33 33 H 1.09006 * 109.22320 * 308.24484 * 7 5 2 34 34 H 1.08994 * 109.22757 * 67.59283 * 7 5 2 35 35 H 1.09006 * 109.68013 * 155.23405 * 8 7 5 36 36 H 1.09001 * 109.85338 * 34.67307 * 8 7 5 37 37 H 1.09001 * 109.46943 * 30.02312 * 12 11 9 38 38 H 1.09000 * 109.46827 * 150.02385 * 12 11 9 39 39 H 1.09001 * 109.47528 * 299.99834 * 13 12 11 40 40 H 1.09000 * 109.47546 * 60.00202 * 13 12 11 41 41 H 0.97006 * 119.99479 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.60477 * 168.26423 * 22 11 9 43 43 H 1.08998 * 109.60975 * 47.76944 * 22 11 9 44 44 H 1.08997 * 109.19737 * 292.23805 * 23 5 2 45 45 H 1.09000 * 109.19241 * 51.56978 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1298 -0.7131 -1.2342 7 6 1.5661 -2.1626 -1.2040 8 6 2.2120 -2.9806 -2.3254 9 6 1.3853 -2.8053 -3.5818 10 8 0.7130 -3.7256 -3.9963 11 7 1.3937 -1.6418 -4.2340 12 6 0.5851 -1.4804 -5.4448 13 6 1.4121 -1.8820 -6.6677 14 6 0.5805 -1.7154 -7.9134 15 1 -0.4361 -1.3583 -7.8402 16 6 1.1178 -2.0178 -9.1466 17 7 0.3922 -1.8719 -10.2337 18 14 2.8769 -2.6334 -9.2735 19 1 2.8905 -4.1154 -9.1809 20 1 3.4557 -2.2134 -10.5749 21 1 3.6828 -2.0607 -8.1654 22 6 2.2107 -0.5193 -3.7452 23 6 1.5662 0.0386 -2.4747 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -0.2075 2.1393 33 1 1.8362 -2.5992 -0.2424 34 1 0.4823 -2.1878 -1.3170 35 1 2.2341 -4.0339 -2.0455 36 1 3.2279 -2.6276 -2.5032 37 1 -0.2983 -2.1156 -5.3791 38 1 0.2775 -0.4390 -5.5402 39 1 2.2956 -1.2469 -6.7335 40 1 1.7196 -2.9234 -6.5724 41 1 0.7701 -2.0850 -11.1013 42 1 2.2538 0.2602 -4.5059 43 1 3.2178 -0.8704 -3.5205 44 1 0.4827 -0.0494 -2.5542 45 1 1.8336 1.0900 -2.3700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079282886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:54 Heat of formation + Delta-G solvation = -83.759503 kcal Electronic energy + Delta-G solvation = -21676.728702 eV Core-core repulsion = 18692.226032 eV Total energy + Delta-G solvation = -2984.502670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59583 -39.52902 -37.06908 -35.45539 -34.26682 -32.42147 -31.47714 -28.42161 -28.14302 -27.73457 -26.20998 -24.50509 -22.90130 -22.08930 -19.76998 -19.27710 -19.00393 -17.95304 -17.36370 -16.54325 -16.22300 -15.65942 -15.26502 -15.10259 -14.87609 -14.77743 -14.66077 -14.57656 -14.33064 -13.69333 -13.39670 -13.32322 -12.98605 -12.92051 -12.67369 -12.66198 -12.60622 -12.33685 -12.18637 -11.95954 -11.92387 -11.84134 -11.71285 -11.52429 -11.14557 -11.04039 -10.90216 -10.82230 -10.59759 -9.57542 -8.34419 -6.39189 1.30449 1.32960 1.43975 1.74602 2.16924 2.31459 3.00626 3.55591 3.67510 3.81384 3.82829 4.20187 4.22608 4.31403 4.33779 4.37027 4.50422 4.51862 4.56177 4.61201 4.81162 4.83662 4.87494 4.89659 4.92294 4.93566 5.01043 5.03858 5.14707 5.17188 5.19182 5.23255 5.27394 5.32814 5.34889 5.40479 5.49565 5.54573 5.66197 5.68621 5.72589 6.20233 6.59162 6.67093 7.24715 7.30901 8.82195 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.004401 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.203236 B = 6361.173785 C = 6562.137643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.144 4.144 5 C -0.074 4.074 6 H 0.090 0.910 7 C -0.105 4.105 8 C -0.127 4.127 9 C 0.496 3.504 10 O -0.612 6.612 11 N -0.602 5.602 12 C 0.135 3.865 13 C -0.011 4.011 14 C -0.533 4.533 15 H 0.036 0.964 16 C 0.009 3.991 17 N -0.947 5.947 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.245 1.245 22 C 0.101 3.899 23 C -0.133 4.133 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.030 0.970 40 H -0.003 1.003 41 H 0.268 0.732 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 7.083 26.171 28.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 C -0.201 4.201 4 C -0.201 4.201 5 C -0.092 4.092 6 H 0.108 0.892 7 C -0.142 4.142 8 C -0.166 4.166 9 C 0.286 3.714 10 O -0.494 6.494 11 N -0.333 5.333 12 C 0.012 3.988 13 C -0.049 4.049 14 C -0.572 4.572 15 H 0.054 0.946 16 C -0.188 4.188 17 N -0.587 5.587 18 Si 0.774 3.226 19 H -0.203 1.203 20 H -0.200 1.200 21 H -0.169 1.169 22 C -0.020 4.020 23 C -0.171 4.171 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.015 0.985 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.800 6.645 25.790 28.049 hybrid contribution -0.125 -0.538 -0.994 1.137 sum 8.675 6.107 24.796 26.971 Atomic orbital electron populations 1.21989 0.95627 1.01366 1.01499 1.20538 0.94911 0.95934 0.94700 1.21959 1.01472 0.94777 1.01886 1.21966 1.01481 1.00259 0.96419 1.20830 1.01466 0.93035 0.93893 0.89156 1.21431 0.99732 0.95193 0.97872 1.22025 0.99951 1.03445 0.91218 1.21492 0.82306 0.81398 0.86180 1.90687 1.46254 1.42196 1.70304 1.48153 1.45657 1.13673 1.25786 1.21218 0.93385 1.00924 0.83248 1.19700 0.96366 0.95567 0.93277 1.21307 0.99787 1.44553 0.91533 0.94558 1.25945 1.02698 0.94995 0.95169 1.70054 1.39244 1.50460 0.98936 0.85665 0.79781 0.78793 0.78410 1.20321 1.20006 1.16885 1.22149 0.94669 0.88093 0.97072 1.21986 1.00609 1.01345 0.93142 0.93257 0.92421 0.93373 0.92647 0.91738 0.92269 0.92340 0.91731 0.92595 0.88212 0.93448 0.88824 0.86982 0.93720 0.89838 0.95159 0.98472 0.92295 0.89204 0.88704 0.92752 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 7.83 71.98 0.56 -1.65 16 2 C -0.06 -0.73 0.56 -52.18 -0.03 -0.76 16 3 C -0.14 -1.51 8.06 71.98 0.58 -0.93 16 4 C -0.14 -1.48 8.06 71.98 0.58 -0.90 16 5 C -0.07 -1.03 1.10 -11.59 -0.01 -1.04 16 6 H 0.09 0.97 7.88 -2.39 -0.02 0.95 16 7 C -0.10 -1.83 4.23 30.23 0.13 -1.70 16 8 C -0.13 -2.84 5.57 30.11 0.17 -2.67 16 9 C 0.50 17.54 6.79 88.10 0.60 18.14 16 10 O -0.61 -28.85 16.60 -3.03 -0.05 -28.90 16 11 N -0.60 -20.14 2.45 -821.15 -2.02 -22.15 16 12 C 0.14 5.76 5.26 86.38 0.45 6.22 16 13 C -0.01 -0.54 4.36 29.85 0.13 -0.41 16 14 C -0.53 -32.18 9.66 25.60 0.25 -31.93 16 15 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 16 C 0.01 0.56 5.47 84.65 0.46 1.03 16 17 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 18 Si 0.95 46.20 27.47 68.60 1.88 48.09 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 22 C 0.10 2.24 5.88 86.24 0.51 2.75 16 23 C -0.13 -2.27 4.31 30.19 0.13 -2.14 16 24 H 0.05 0.83 6.58 -2.39 -0.02 0.81 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.81 6.58 -2.38 -0.02 0.79 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.65 6.14 -2.39 -0.01 0.63 16 30 H 0.06 0.62 6.14 -2.39 -0.01 0.61 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 1.33 5.82 -2.38 -0.01 1.31 16 34 H 0.05 1.05 6.50 -2.39 -0.02 1.04 16 35 H 0.09 2.09 8.13 -2.38 -0.02 2.07 16 36 H 0.11 1.92 6.78 -2.39 -0.02 1.90 16 37 H 0.04 2.17 7.38 -2.39 -0.02 2.16 16 38 H 0.08 3.25 8.03 -2.39 -0.02 3.23 16 39 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 40 H 0.00 -0.17 7.57 -2.39 -0.02 -0.19 16 41 H 0.27 15.98 8.31 -92.70 -0.77 15.21 16 42 H 0.09 1.97 7.92 -2.39 -0.02 1.95 16 43 H 0.09 1.66 6.71 -2.39 -0.02 1.65 16 44 H 0.05 1.17 6.69 -2.39 -0.02 1.16 16 45 H 0.10 1.33 5.81 -2.39 -0.01 1.32 16 Total: -1.00 -76.84 333.25 5.52 -71.32 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.89 Total: 8.19 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 4.51 Total: -16.01 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.72 Total: -82.69 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.05 Total: -28.90 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.09 kcal Total: -76.84 5.52 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079282886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.441 kcal (2) G-P(sol) polarization free energy of solvation -76.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds