Wall clock time and date at job start Mon Mar 30 2020 07:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47167 * 2 1 4 4 C 1.52997 * 109.47071 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47449 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47401 * 180.02562 * 6 5 4 8 8 C 1.50688 * 109.47258 * 179.97438 * 7 6 5 9 9 O 1.21286 * 120.00033 * 2.78222 * 8 7 6 10 10 N 1.34779 * 120.00125 * 182.78449 * 8 7 6 11 11 C 1.46496 * 120.00021 * 5.94110 * 10 8 7 12 12 C 1.50705 * 109.46956 * 270.00320 * 11 10 8 13 13 H 1.07992 * 120.00142 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99682 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00360 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99866 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46908 * 90.00019 * 16 14 12 18 18 H 1.48499 * 109.47200 * 210.00404 * 16 14 12 19 19 H 1.48501 * 109.46932 * 330.00408 * 16 14 12 20 20 C 1.46500 * 120.00204 * 185.94559 * 10 8 7 21 21 C 1.53006 * 117.50049 * 16.38754 * 20 10 8 22 22 C 1.52999 * 117.49730 * 307.73170 * 20 10 8 23 23 H 1.09002 * 109.47201 * 299.99929 * 1 2 3 24 24 H 1.09006 * 109.46951 * 59.99654 * 1 2 3 25 25 H 1.08999 * 109.47617 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47201 * 240.00071 * 2 1 3 27 27 H 1.09001 * 109.46772 * 119.99906 * 2 1 3 28 28 H 1.09002 * 109.47002 * 59.99949 * 3 2 1 29 29 H 1.08993 * 109.47145 * 300.00002 * 3 2 1 30 30 H 1.09002 * 109.46953 * 60.00282 * 4 3 2 31 31 H 1.08998 * 109.47612 * 300.00628 * 4 3 2 32 32 H 1.09002 * 109.46837 * 60.00241 * 5 4 3 33 33 H 1.09006 * 109.47352 * 300.00493 * 5 4 3 34 34 H 1.09002 * 109.47201 * 60.00101 * 6 5 4 35 35 H 1.09001 * 109.46772 * 299.99936 * 6 5 4 36 36 H 1.09002 * 109.47014 * 59.99798 * 7 6 5 37 37 H 1.08997 * 109.46451 * 300.00185 * 7 6 5 38 38 H 1.09000 * 109.47141 * 29.99590 * 11 10 8 39 39 H 1.08992 * 109.47446 * 150.00277 * 11 10 8 40 40 H 0.97001 * 120.00373 * 179.97438 * 15 14 12 41 41 H 1.09000 * 115.55478 * 162.06094 * 20 10 8 42 42 H 1.09000 * 117.49605 * 0.02562 * 21 20 10 43 43 H 1.08991 * 117.49876 * 145.02148 * 21 20 10 44 44 H 1.09002 * 117.49970 * 214.98303 * 22 20 10 45 45 H 1.09004 * 117.49853 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 6 6.1201 4.3274 0.0000 8 6 7.6270 4.3274 0.0006 9 8 8.2334 3.2782 -0.0499 10 7 8.3009 5.4932 0.0574 11 6 7.5743 6.7507 0.2496 12 6 7.1984 7.3237 -1.0926 13 1 7.4728 6.8030 -1.9981 14 6 6.5031 8.5122 -1.1644 15 7 6.1684 9.1460 -0.0618 16 14 6.0376 9.2228 -2.8281 17 1 4.7053 8.7061 -3.2319 18 1 5.9873 10.7042 -2.7371 19 1 7.0504 8.8231 -3.8380 20 6 9.7601 5.5029 -0.0730 21 6 10.4266 4.2504 -0.6457 22 6 10.5576 4.5740 0.8446 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9337 0.9285 -0.8892 31 1 3.9330 0.9287 0.8908 32 1 3.7164 3.3992 0.8896 33 1 3.7170 3.3983 -0.8904 34 1 5.9734 2.3706 -0.8898 35 1 5.9733 2.3714 0.8902 36 1 5.7568 4.8412 0.8900 37 1 5.7567 4.8411 -0.8900 38 1 6.6712 6.5634 0.8305 39 1 8.2086 7.4591 0.7823 40 1 5.6796 9.9823 -0.1123 41 1 10.2035 6.4672 -0.3214 42 1 9.7793 3.4193 -0.9258 43 1 11.3086 4.3907 -1.2706 44 1 11.5258 4.9271 1.1997 45 1 9.9966 3.9560 1.5457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103418790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:45 Heat of formation + Delta-G solvation = -45.296361 kcal Electronic energy + Delta-G solvation = -20458.680356 eV Core-core repulsion = 17475.845573 eV Total energy + Delta-G solvation = -2982.834783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.58853 -36.75276 -35.79521 -34.32651 -33.71660 -32.16742 -30.42755 -27.10192 -26.65135 -23.51795 -22.82605 -21.80676 -21.68005 -20.98699 -20.41062 -18.16045 -16.66641 -16.14267 -15.98872 -15.39998 -15.03197 -14.50047 -14.16544 -14.05747 -13.98518 -13.38900 -13.02915 -12.78819 -12.49608 -12.25443 -12.00439 -11.89038 -11.76657 -11.55656 -11.19659 -11.09670 -11.01137 -10.88754 -10.77986 -10.64159 -10.58094 -10.44313 -10.29085 -10.22923 -10.17755 -9.69224 -9.58676 -8.68865 -8.51833 -7.49342 -6.19449 -4.27245 3.21487 3.28795 3.31121 3.37595 3.87100 4.31931 4.57666 4.67085 4.83008 4.98673 5.12232 5.16761 5.20162 5.31088 5.44688 5.48249 5.53275 5.62259 5.66278 5.67516 5.76271 5.77192 5.89196 5.93546 6.03060 6.06452 6.15592 6.17147 6.18654 6.25861 6.31562 6.34084 6.42977 6.55465 6.64391 6.72595 6.82969 6.94287 7.18137 7.63425 7.75938 8.03823 8.35844 8.79134 9.05221 9.40832 10.86906 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.004658 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.632698 B = 6010.103496 C = 7826.402030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.100 4.100 7 C -0.135 4.135 8 C 0.516 3.484 9 O -0.570 6.570 10 N -0.570 5.570 11 C 0.239 3.761 12 C -0.537 4.537 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.891 5.891 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.088 3.912 21 C -0.199 4.199 22 C -0.195 4.195 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 -11.736 1.073 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.156 4.156 5 C -0.158 4.158 6 C -0.138 4.138 7 C -0.174 4.174 8 C 0.306 3.694 9 O -0.453 6.453 10 N -0.298 5.298 11 C 0.120 3.880 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.018 4.018 21 C -0.236 4.236 22 C -0.234 4.234 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.152 0.848 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.634 -12.046 1.127 12.955 hybrid contribution -0.263 0.823 -0.860 1.219 sum -4.898 -11.223 0.266 12.248 Atomic orbital electron populations 1.21786 0.96166 1.01300 1.01794 1.21548 0.95596 0.97326 1.01856 1.21642 0.95850 0.96324 1.02075 1.21593 0.94830 0.97276 1.01907 1.21623 0.95727 0.96263 1.02233 1.21323 0.94113 0.95702 1.02654 1.21650 0.92353 0.98219 1.05200 1.20657 0.90346 0.82926 0.75487 1.90425 1.69974 1.32185 1.52696 1.47712 1.04748 1.08721 1.68623 1.19451 0.91987 0.79314 0.97272 1.21504 1.36497 1.06866 0.92744 0.92033 1.24944 0.95468 0.96530 0.96856 1.69922 1.39070 1.17001 1.26979 0.86519 0.79014 0.78215 0.83892 1.20439 1.21067 1.19787 1.21528 0.80981 0.95540 1.03706 1.23745 1.02294 1.02042 0.95565 1.23179 1.01096 1.04878 0.94249 0.92815 0.92799 0.93045 0.92175 0.92190 0.92080 0.92045 0.92155 0.92195 0.92027 0.91882 0.91740 0.92025 0.89398 0.88064 0.94145 0.94563 0.92503 0.85849 0.84794 0.90280 0.89564 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.13 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 4 C -0.12 -1.33 5.21 -26.74 -0.14 -1.47 16 5 C -0.12 -1.57 5.21 -26.73 -0.14 -1.71 16 6 C -0.10 -1.54 4.51 -26.73 -0.12 -1.66 16 7 C -0.13 -2.44 4.48 -27.89 -0.12 -2.57 16 8 C 0.52 10.71 7.46 -10.99 -0.08 10.63 16 9 O -0.57 -12.30 11.73 5.55 0.07 -12.24 16 10 N -0.57 -12.29 2.82 -167.47 -0.47 -12.76 16 11 C 0.24 5.70 4.96 -5.19 -0.03 5.68 16 12 C -0.54 -13.88 9.28 -34.44 -0.32 -14.20 16 13 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -24.37 13.29 55.43 0.74 -23.64 16 16 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.09 1.72 6.60 -67.93 -0.45 1.27 16 21 C -0.20 -3.60 9.63 -26.69 -0.26 -3.86 16 22 C -0.20 -3.40 9.88 -26.70 -0.26 -3.67 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 35 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 36 H 0.09 1.57 7.08 -51.93 -0.37 1.21 16 37 H 0.10 1.94 8.04 -51.93 -0.42 1.52 16 38 H 0.04 0.98 6.41 -51.93 -0.33 0.65 16 39 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.12 2.34 8.14 -51.93 -0.42 1.91 16 42 H 0.13 2.72 5.22 -52.11 -0.27 2.45 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.09 1.71 7.60 -51.93 -0.39 1.32 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -27.31 361.18 -9.71 -37.01 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.51 Total: 4.24 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.95 Total: -13.44 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.26 Total: -36.40 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.07 Total: -12.24 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.31 -9.71 -37.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103418790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.283 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds