Wall clock time and date at job start Mon Mar 30 2020 07:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47167 * 2 1 4 4 C 1.52997 * 109.47071 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47449 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47401 * 180.02562 * 6 5 4 8 8 C 1.50688 * 109.47258 * 179.97438 * 7 6 5 9 9 O 1.21286 * 120.00033 * 2.78222 * 8 7 6 10 10 N 1.34779 * 120.00125 * 182.78449 * 8 7 6 11 11 C 1.46496 * 120.00021 * 5.94110 * 10 8 7 12 12 C 1.50705 * 109.46956 * 270.00320 * 11 10 8 13 13 H 1.07992 * 120.00142 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99682 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00360 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99866 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46908 * 90.00019 * 16 14 12 18 18 H 1.48499 * 109.47200 * 210.00404 * 16 14 12 19 19 H 1.48501 * 109.46932 * 330.00408 * 16 14 12 20 20 C 1.46500 * 120.00204 * 185.94559 * 10 8 7 21 21 C 1.53006 * 117.50049 * 16.38754 * 20 10 8 22 22 C 1.52999 * 117.49730 * 307.73170 * 20 10 8 23 23 H 1.09002 * 109.47201 * 299.99929 * 1 2 3 24 24 H 1.09006 * 109.46951 * 59.99654 * 1 2 3 25 25 H 1.08999 * 109.47617 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47201 * 240.00071 * 2 1 3 27 27 H 1.09001 * 109.46772 * 119.99906 * 2 1 3 28 28 H 1.09002 * 109.47002 * 59.99949 * 3 2 1 29 29 H 1.08993 * 109.47145 * 300.00002 * 3 2 1 30 30 H 1.09002 * 109.46953 * 60.00282 * 4 3 2 31 31 H 1.08998 * 109.47612 * 300.00628 * 4 3 2 32 32 H 1.09002 * 109.46837 * 60.00241 * 5 4 3 33 33 H 1.09006 * 109.47352 * 300.00493 * 5 4 3 34 34 H 1.09002 * 109.47201 * 60.00101 * 6 5 4 35 35 H 1.09001 * 109.46772 * 299.99936 * 6 5 4 36 36 H 1.09002 * 109.47014 * 59.99798 * 7 6 5 37 37 H 1.08997 * 109.46451 * 300.00185 * 7 6 5 38 38 H 1.09000 * 109.47141 * 29.99590 * 11 10 8 39 39 H 1.08992 * 109.47446 * 150.00277 * 11 10 8 40 40 H 0.97001 * 120.00373 * 179.97438 * 15 14 12 41 41 H 1.09000 * 115.55478 * 162.06094 * 20 10 8 42 42 H 1.09000 * 117.49605 * 0.02562 * 21 20 10 43 43 H 1.08991 * 117.49876 * 145.02148 * 21 20 10 44 44 H 1.09002 * 117.49970 * 214.98303 * 22 20 10 45 45 H 1.09004 * 117.49853 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 6 6.1201 4.3274 0.0000 8 6 7.6270 4.3274 0.0006 9 8 8.2334 3.2782 -0.0499 10 7 8.3009 5.4932 0.0574 11 6 7.5743 6.7507 0.2496 12 6 7.1984 7.3237 -1.0926 13 1 7.4728 6.8030 -1.9981 14 6 6.5031 8.5122 -1.1644 15 7 6.1684 9.1460 -0.0618 16 14 6.0376 9.2228 -2.8281 17 1 4.7053 8.7061 -3.2319 18 1 5.9873 10.7042 -2.7371 19 1 7.0504 8.8231 -3.8380 20 6 9.7601 5.5029 -0.0730 21 6 10.4266 4.2504 -0.6457 22 6 10.5576 4.5740 0.8446 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9337 0.9285 -0.8892 31 1 3.9330 0.9287 0.8908 32 1 3.7164 3.3992 0.8896 33 1 3.7170 3.3983 -0.8904 34 1 5.9734 2.3706 -0.8898 35 1 5.9733 2.3714 0.8902 36 1 5.7568 4.8412 0.8900 37 1 5.7567 4.8411 -0.8900 38 1 6.6712 6.5634 0.8305 39 1 8.2086 7.4591 0.7823 40 1 5.6796 9.9823 -0.1123 41 1 10.2035 6.4672 -0.3214 42 1 9.7793 3.4193 -0.9258 43 1 11.3086 4.3907 -1.2706 44 1 11.5258 4.9271 1.1997 45 1 9.9966 3.9560 1.5457 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103418790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:44 Heat of formation + Delta-G solvation = -56.435814 kcal Electronic energy + Delta-G solvation = -20459.163399 eV Core-core repulsion = 17475.845573 eV Total energy + Delta-G solvation = -2983.317826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22010 -37.87277 -37.15490 -36.03690 -34.89829 -34.03705 -31.51322 -29.00911 -27.78239 -24.95686 -24.51477 -23.24465 -22.89452 -21.86190 -21.56347 -19.79387 -18.65162 -17.80230 -17.09798 -16.96378 -16.42484 -16.20088 -15.55343 -15.31589 -14.81362 -14.67334 -14.41276 -14.07452 -14.02314 -13.79448 -13.50477 -13.07256 -13.02140 -12.84587 -12.81798 -12.64343 -12.37591 -12.18462 -12.08601 -12.00635 -11.88382 -11.72626 -11.48084 -11.43803 -11.30184 -11.26471 -11.20076 -10.62854 -10.23580 -9.19876 -8.20093 -6.35640 1.41625 1.43657 1.52957 1.70728 2.24158 2.43379 3.08383 3.09721 3.61512 3.87733 4.00338 4.01189 4.12215 4.17999 4.24039 4.25566 4.29186 4.45119 4.55060 4.70185 4.72746 4.76769 4.80896 4.82614 4.88784 4.97038 5.01699 5.05146 5.08062 5.11498 5.15878 5.20443 5.23627 5.33373 5.34212 5.42016 5.47386 5.53265 5.57633 5.67880 5.96554 6.04192 6.56921 6.81352 7.31236 7.41963 8.84853 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.004658 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.632698 B = 6010.103496 C = 7826.402030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.089 4.089 7 C -0.130 4.130 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.577 5.577 11 C 0.255 3.745 12 C -0.545 4.545 13 H 0.052 0.948 14 C 0.023 3.977 15 N -0.920 5.920 16 Si 0.956 3.044 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.272 1.272 20 C 0.058 3.942 21 C -0.191 4.191 22 C -0.176 4.176 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.032 0.968 39 H 0.019 0.981 40 H 0.268 0.732 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 -12.265 0.562 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.127 4.127 7 C -0.169 4.169 8 C 0.299 3.701 9 O -0.462 6.462 10 N -0.305 5.305 11 C 0.134 3.866 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.178 4.178 15 N -0.559 5.559 16 Si 0.782 3.218 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.197 1.197 20 C -0.047 4.047 21 C -0.229 4.229 22 C -0.214 4.214 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.050 0.950 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.136 0.864 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.796 -12.593 0.616 13.489 hybrid contribution -0.153 0.968 -0.677 1.191 sum -4.949 -11.625 -0.061 12.635 Atomic orbital electron populations 1.21784 0.95456 1.01932 1.01849 1.21539 0.96235 0.96435 1.02053 1.21616 0.94807 0.97222 1.02024 1.21549 0.95742 0.95802 1.02074 1.21581 0.93776 0.97721 1.02264 1.21247 0.95785 0.93561 1.02139 1.21649 0.90752 0.99985 1.04533 1.21077 0.91336 0.82584 0.75142 1.90426 1.70458 1.32255 1.53059 1.47705 1.05804 1.08099 1.68911 1.19088 0.91430 0.79866 0.96175 1.21640 1.36558 1.07096 0.93055 0.92974 1.25643 0.95335 0.96800 0.99997 1.70008 1.39673 1.17429 1.28770 0.85575 0.78802 0.77541 0.79906 1.19722 1.20619 1.19706 1.21776 0.80163 0.96506 1.06236 1.23696 1.02504 1.00075 0.96584 1.23192 1.01644 1.03038 0.93531 0.92718 0.92811 0.92158 0.92062 0.91937 0.92031 0.92215 0.92126 0.91902 0.91760 0.92088 0.92447 0.92224 0.89375 0.89214 0.94996 0.96255 0.92260 0.85593 0.86966 0.87556 0.86379 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.13 -2.04 5.93 30.59 0.18 -1.85 16 3 C -0.12 -2.23 5.21 30.59 0.16 -2.07 16 4 C -0.11 -2.43 5.21 30.59 0.16 -2.27 16 5 C -0.12 -2.94 5.21 30.59 0.16 -2.78 16 6 C -0.09 -2.74 4.51 30.60 0.14 -2.60 16 7 C -0.13 -4.76 4.48 29.85 0.13 -4.63 16 8 C 0.51 21.31 7.46 87.65 0.65 21.96 16 9 O -0.58 -25.05 11.73 -3.05 -0.04 -25.08 16 10 N -0.58 -25.14 2.82 -802.15 -2.26 -27.40 16 11 C 0.26 12.37 4.96 85.64 0.43 12.80 16 12 C -0.54 -28.36 9.28 25.60 0.24 -28.12 16 13 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 14 C 0.02 1.19 5.46 84.66 0.46 1.65 16 15 N -0.92 -50.37 13.29 21.45 0.28 -50.09 16 16 Si 0.96 41.49 29.54 68.60 2.03 43.52 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 C 0.06 2.24 6.60 44.99 0.30 2.54 16 21 C -0.19 -6.67 9.63 30.62 0.29 -6.37 16 22 C -0.18 -5.85 9.88 30.62 0.30 -5.55 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.06 1.83 8.07 -2.39 -0.02 1.82 16 35 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 36 H 0.09 3.21 7.08 -2.39 -0.02 3.19 16 37 H 0.09 3.51 8.04 -2.39 -0.02 3.49 16 38 H 0.03 1.59 6.41 -2.39 -0.02 1.58 16 39 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 40 H 0.27 13.91 8.31 -92.71 -0.77 13.13 16 41 H 0.13 4.72 8.14 -2.39 -0.02 4.70 16 42 H 0.11 4.50 5.22 -5.27 -0.03 4.47 16 43 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.08 2.78 7.60 -2.38 -0.02 2.76 16 Total: -1.00 -57.02 361.18 5.23 -51.79 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.90 Total: 26.06 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.32 Total: -18.80 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -1.98 Total: -77.49 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.04 Total: -25.08 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -57.02 5.23 -51.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103418790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.647 kcal (2) G-P(sol) polarization free energy of solvation -57.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds