Wall clock time and date at job start Mon Mar 30 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47046 * 2 1 4 4 C 1.52997 * 109.46893 * 184.93930 * 3 2 1 5 5 C 1.53000 * 109.47261 * 296.22726 * 4 3 2 6 6 C 1.53005 * 109.46870 * 294.70705 * 5 4 3 7 7 C 1.53000 * 109.46797 * 185.13124 * 6 5 4 8 8 C 1.50704 * 109.47261 * 56.22493 * 4 3 2 9 9 O 1.21280 * 120.00063 * 254.14498 * 8 4 3 10 10 N 1.34776 * 119.99641 * 74.14852 * 8 4 3 11 11 C 1.46505 * 119.99756 * 183.72712 * 10 8 4 12 12 C 1.50698 * 109.47079 * 269.99883 * 11 10 8 13 13 H 1.08006 * 120.00134 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00328 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99300 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00146 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47197 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46729 * 120.00145 * 16 14 12 19 19 H 1.48495 * 109.47134 * 239.99740 * 16 14 12 20 20 C 1.46498 * 120.00087 * 3.72832 * 10 8 4 21 21 C 1.53001 * 117.49690 * 182.85058 * 20 10 8 22 22 C 1.53003 * 117.49990 * 114.19400 * 20 10 8 23 23 H 1.09000 * 109.46736 * 60.00386 * 1 2 3 24 24 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46974 * 300.00259 * 1 2 3 26 26 H 1.09005 * 109.47155 * 239.99578 * 2 1 3 27 27 H 1.09006 * 109.46852 * 120.00027 * 2 1 3 28 28 H 1.08996 * 109.47067 * 64.94241 * 3 2 1 29 29 H 1.08993 * 109.46948 * 304.93825 * 3 2 1 30 30 H 1.09000 * 109.47070 * 176.22290 * 4 3 2 31 31 H 1.08999 * 109.47324 * 54.70953 * 5 4 3 32 32 H 1.08998 * 109.47071 * 174.70991 * 5 4 3 33 33 H 1.08992 * 109.47473 * 305.13395 * 6 5 4 34 34 H 1.08999 * 109.46909 * 65.13634 * 6 5 4 35 35 H 1.09003 * 109.46734 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47210 * 299.99778 * 7 6 5 37 37 H 1.08994 * 109.47403 * 60.00708 * 7 6 5 38 38 H 1.08997 * 109.47159 * 30.00167 * 11 10 8 39 39 H 1.08997 * 109.46824 * 150.00120 * 11 10 8 40 40 H 0.97003 * 119.99467 * 179.97438 * 15 14 12 41 41 H 1.09000 * 115.55247 * 328.51877 * 20 10 8 42 42 H 1.09004 * 117.50140 * 0.02562 * 21 20 10 43 43 H 1.09005 * 117.49903 * 145.01576 * 21 20 10 44 44 H 1.08997 * 117.49444 * 214.97483 * 22 20 10 45 45 H 1.09003 * 117.49694 * 359.97205 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5650 1.4442 -0.1242 5 6 4.1776 0.7705 1.1053 6 6 3.8781 1.6098 2.3490 7 6 4.5972 1.0059 3.5570 8 6 3.9689 0.6891 -1.3643 9 8 4.4522 -0.4191 -1.2690 10 7 3.7931 1.2455 -2.5792 11 6 4.1093 0.4805 -3.7879 12 6 5.5488 0.7140 -4.1679 13 1 6.1665 1.3666 -3.5688 14 6 6.0777 0.0936 -5.2799 15 7 5.3256 -0.7015 -6.0092 16 14 7.8617 0.3836 -5.7513 17 1 8.4866 1.3128 -4.7761 18 1 8.5927 -0.9090 -5.7411 19 1 7.9243 0.9768 -7.1112 20 6 3.2858 2.6153 -2.6911 21 6 3.0448 3.1667 -4.0978 22 6 4.2283 3.6727 -3.2694 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.7508 1.9301 0.9309 29 1 1.6063 1.9812 -0.8424 30 1 3.9228 2.4716 -0.1917 31 1 3.7485 -0.2242 1.2262 32 1 5.2565 0.6873 0.9742 33 1 4.2269 2.6303 2.1914 34 1 2.8037 1.6172 2.5322 35 1 4.3835 1.6035 4.4431 36 1 4.2483 -0.0147 3.7147 37 1 5.6717 0.9984 3.3739 38 1 3.9513 -0.5811 -3.5977 39 1 3.4614 0.8040 -4.6025 40 1 5.6976 -1.1377 -6.7918 41 1 2.6005 2.9287 -1.9035 42 1 3.2632 2.5101 -4.9400 43 1 2.2011 3.8430 -4.2356 44 1 4.1628 4.6818 -2.8626 45 1 5.2260 3.3493 -3.5663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211851145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:49 Heat of formation + Delta-G solvation = -39.032229 kcal Electronic energy + Delta-G solvation = -21771.920049 eV Core-core repulsion = 18789.356899 eV Total energy + Delta-G solvation = -2982.563150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.71899 -37.08594 -35.97349 -33.71362 -33.12898 -31.91940 -30.59343 -27.44330 -26.13532 -24.12092 -22.68554 -22.14817 -21.78605 -21.44212 -19.69310 -17.98933 -16.52139 -16.36674 -15.73279 -15.37007 -14.94231 -14.35220 -14.12580 -13.97397 -13.69979 -13.45912 -13.16619 -12.90073 -12.41607 -12.14138 -11.84612 -11.80238 -11.57569 -11.42437 -11.30740 -11.06946 -10.92494 -10.83742 -10.78071 -10.52065 -10.50175 -10.40873 -10.32738 -10.08175 -10.01383 -9.95462 -9.41821 -8.69027 -8.40864 -7.45851 -6.02383 -4.06116 3.30318 3.37863 3.40656 3.46580 3.91090 4.42907 4.46944 4.82182 4.87285 5.04269 5.12655 5.20328 5.25633 5.30993 5.33725 5.36838 5.43305 5.56016 5.58106 5.71694 5.75928 5.80521 5.86056 5.89832 5.98450 6.00319 6.06274 6.12377 6.17790 6.19440 6.25454 6.39744 6.47846 6.51829 6.63283 6.67448 6.79728 7.14038 7.47327 7.60481 7.94969 8.26246 8.51029 8.93920 9.17988 9.58741 11.05511 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.005753 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.732385 B = 4866.226301 C = 5253.156915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.109 4.109 4 C -0.110 4.110 5 C -0.101 4.101 6 C -0.124 4.124 7 C -0.151 4.151 8 C 0.517 3.483 9 O -0.539 6.539 10 N -0.571 5.571 11 C 0.243 3.757 12 C -0.518 4.518 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.067 3.933 21 C -0.181 4.181 22 C -0.194 4.194 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.262 0.738 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 7.994 12.943 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.147 4.147 4 C -0.131 4.131 5 C -0.139 4.139 6 C -0.161 4.161 7 C -0.209 4.209 8 C 0.304 3.696 9 O -0.416 6.416 10 N -0.301 5.301 11 C 0.124 3.876 12 C -0.557 4.557 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.039 4.039 21 C -0.219 4.219 22 C -0.233 4.233 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.715 7.251 12.811 16.620 hybrid contribution 1.067 0.241 -0.520 1.211 sum -6.648 7.492 12.290 15.855 Atomic orbital electron populations 1.21753 0.96171 1.01391 1.01291 1.21610 0.95312 0.96705 1.03009 1.21636 0.93262 0.97696 1.02098 1.21412 0.96847 1.00554 0.94328 1.21438 1.01274 0.99291 0.91877 1.21584 1.00360 0.99340 0.94834 1.21762 1.00733 1.00805 0.97583 1.20193 0.78589 0.86598 0.84224 1.90664 1.44100 1.20586 1.86272 1.47704 1.62549 1.12241 1.07617 1.19322 0.95895 0.91984 0.80425 1.21453 0.96257 1.27920 1.10076 0.92461 1.24922 0.97864 0.94987 0.96330 1.69944 1.35971 1.30337 1.17211 0.86491 0.85065 0.78077 0.78108 1.19844 1.20941 1.21016 1.21660 1.00757 0.83713 0.97736 1.23280 0.99651 1.03408 0.95522 1.23426 0.97520 0.97692 1.04645 0.92860 0.92970 0.93161 0.91321 0.91729 0.91227 0.91487 0.89541 0.90932 0.91593 0.92261 0.91998 0.93153 0.92793 0.92749 0.94079 0.94611 0.92858 0.86551 0.86799 0.89199 0.89566 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.13 -1.77 5.34 -26.73 -0.14 -1.91 16 3 C -0.11 -1.38 4.58 -26.73 -0.12 -1.50 16 4 C -0.11 -1.66 1.67 -91.77 -0.15 -1.81 16 5 C -0.10 -1.44 3.85 -26.73 -0.10 -1.55 16 6 C -0.12 -1.34 5.57 -26.73 -0.15 -1.49 16 7 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 8 C 0.52 10.76 5.42 -10.98 -0.06 10.70 16 9 O -0.54 -13.57 15.56 5.56 0.09 -13.48 16 10 N -0.57 -12.16 2.79 -167.47 -0.47 -12.62 16 11 C 0.24 6.33 4.67 -5.19 -0.02 6.30 16 12 C -0.52 -14.58 8.71 -34.44 -0.30 -14.88 16 13 H 0.06 1.63 7.21 -52.48 -0.38 1.25 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.07 1.13 5.42 -67.93 -0.37 0.76 16 21 C -0.18 -2.97 9.74 -26.69 -0.26 -3.23 16 22 C -0.19 -3.18 10.28 -26.69 -0.27 -3.45 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.19 6.82 -51.93 -0.35 0.83 16 27 H 0.06 0.86 6.66 -51.93 -0.35 0.52 16 28 H 0.07 0.72 6.52 -51.93 -0.34 0.38 16 29 H 0.07 0.83 5.96 -51.93 -0.31 0.52 16 30 H 0.09 1.21 7.44 -51.93 -0.39 0.82 16 31 H 0.07 1.10 6.35 -51.93 -0.33 0.77 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.61 6.74 -51.93 -0.35 0.26 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.04 1.22 7.48 -51.93 -0.39 0.83 16 39 H 0.04 0.94 5.99 -51.93 -0.31 0.63 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 41 H 0.12 1.60 5.15 -51.93 -0.27 1.33 16 42 H 0.11 2.24 6.11 -51.93 -0.32 1.92 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.11 2.12 6.94 -51.93 -0.36 1.76 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -31.55 348.12 -8.53 -40.08 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.80 Total: 2.52 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.32 Total: -12.90 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.27 Total: -38.48 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.55 -8.53 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211851145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.051 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds