Wall clock time and date at job start Mon Mar 30 2020 07:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47046 * 2 1 4 4 C 1.52997 * 109.46893 * 184.93930 * 3 2 1 5 5 C 1.53000 * 109.47261 * 296.22726 * 4 3 2 6 6 C 1.53005 * 109.46870 * 294.70705 * 5 4 3 7 7 C 1.53000 * 109.46797 * 185.13124 * 6 5 4 8 8 C 1.50704 * 109.47261 * 56.22493 * 4 3 2 9 9 O 1.21280 * 120.00063 * 254.14498 * 8 4 3 10 10 N 1.34776 * 119.99641 * 74.14852 * 8 4 3 11 11 C 1.46505 * 119.99756 * 183.72712 * 10 8 4 12 12 C 1.50698 * 109.47079 * 269.99883 * 11 10 8 13 13 H 1.08006 * 120.00134 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00328 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99300 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00146 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47197 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46729 * 120.00145 * 16 14 12 19 19 H 1.48495 * 109.47134 * 239.99740 * 16 14 12 20 20 C 1.46498 * 120.00087 * 3.72832 * 10 8 4 21 21 C 1.53001 * 117.49690 * 182.85058 * 20 10 8 22 22 C 1.53003 * 117.49990 * 114.19400 * 20 10 8 23 23 H 1.09000 * 109.46736 * 60.00386 * 1 2 3 24 24 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46974 * 300.00259 * 1 2 3 26 26 H 1.09005 * 109.47155 * 239.99578 * 2 1 3 27 27 H 1.09006 * 109.46852 * 120.00027 * 2 1 3 28 28 H 1.08996 * 109.47067 * 64.94241 * 3 2 1 29 29 H 1.08993 * 109.46948 * 304.93825 * 3 2 1 30 30 H 1.09000 * 109.47070 * 176.22290 * 4 3 2 31 31 H 1.08999 * 109.47324 * 54.70953 * 5 4 3 32 32 H 1.08998 * 109.47071 * 174.70991 * 5 4 3 33 33 H 1.08992 * 109.47473 * 305.13395 * 6 5 4 34 34 H 1.08999 * 109.46909 * 65.13634 * 6 5 4 35 35 H 1.09003 * 109.46734 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47210 * 299.99778 * 7 6 5 37 37 H 1.08994 * 109.47403 * 60.00708 * 7 6 5 38 38 H 1.08997 * 109.47159 * 30.00167 * 11 10 8 39 39 H 1.08997 * 109.46824 * 150.00120 * 11 10 8 40 40 H 0.97003 * 119.99467 * 179.97438 * 15 14 12 41 41 H 1.09000 * 115.55247 * 328.51877 * 20 10 8 42 42 H 1.09004 * 117.50140 * 0.02562 * 21 20 10 43 43 H 1.09005 * 117.49903 * 145.01576 * 21 20 10 44 44 H 1.08997 * 117.49444 * 214.97483 * 22 20 10 45 45 H 1.09003 * 117.49694 * 359.97205 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5650 1.4442 -0.1242 5 6 4.1776 0.7705 1.1053 6 6 3.8781 1.6098 2.3490 7 6 4.5972 1.0059 3.5570 8 6 3.9689 0.6891 -1.3643 9 8 4.4522 -0.4191 -1.2690 10 7 3.7931 1.2455 -2.5792 11 6 4.1093 0.4805 -3.7879 12 6 5.5488 0.7140 -4.1679 13 1 6.1665 1.3666 -3.5688 14 6 6.0777 0.0936 -5.2799 15 7 5.3256 -0.7015 -6.0092 16 14 7.8617 0.3836 -5.7513 17 1 8.4866 1.3128 -4.7761 18 1 8.5927 -0.9090 -5.7411 19 1 7.9243 0.9768 -7.1112 20 6 3.2858 2.6153 -2.6911 21 6 3.0448 3.1667 -4.0978 22 6 4.2283 3.6727 -3.2694 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.7508 1.9301 0.9309 29 1 1.6063 1.9812 -0.8424 30 1 3.9228 2.4716 -0.1917 31 1 3.7485 -0.2242 1.2262 32 1 5.2565 0.6873 0.9742 33 1 4.2269 2.6303 2.1914 34 1 2.8037 1.6172 2.5322 35 1 4.3835 1.6035 4.4431 36 1 4.2483 -0.0147 3.7147 37 1 5.6717 0.9984 3.3739 38 1 3.9513 -0.5811 -3.5977 39 1 3.4614 0.8040 -4.6025 40 1 5.6976 -1.1377 -6.7918 41 1 2.6005 2.9287 -1.9035 42 1 3.2632 2.5101 -4.9400 43 1 2.2011 3.8430 -4.2356 44 1 4.1628 4.6818 -2.8626 45 1 5.2260 3.3493 -3.5663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211851145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:48 Heat of formation + Delta-G solvation = -57.197593 kcal Electronic energy + Delta-G solvation = -21772.707758 eV Core-core repulsion = 18789.356899 eV Total energy + Delta-G solvation = -2983.350859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25970 -38.48673 -37.37695 -35.18029 -34.67428 -33.71390 -31.76111 -29.39309 -27.15265 -25.77803 -24.24911 -23.41691 -23.05006 -22.67966 -20.92668 -19.49151 -18.67427 -17.90151 -17.13946 -16.66871 -16.63770 -15.94674 -15.45540 -15.27205 -15.03756 -14.58992 -14.55202 -14.09224 -13.86784 -13.70939 -13.38695 -13.14192 -12.87880 -12.78167 -12.74688 -12.67334 -12.39825 -12.22902 -12.11492 -11.95527 -11.79327 -11.74764 -11.57910 -11.53180 -11.42224 -11.25307 -11.11468 -10.64891 -10.34320 -9.21930 -8.23385 -6.36969 1.31406 1.33932 1.45354 1.84927 2.26982 2.41332 3.04823 3.08206 3.58749 3.78410 3.94475 3.98067 4.07947 4.14507 4.22241 4.26758 4.30941 4.40370 4.58950 4.68260 4.72595 4.81751 4.83583 4.88258 4.89555 4.99717 5.04324 5.07661 5.10888 5.16096 5.21929 5.23688 5.27367 5.34759 5.39725 5.46392 5.47787 5.49004 5.56538 5.60149 5.86429 6.06087 6.70044 6.85490 7.28336 7.54029 8.83342 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.005753 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.732385 B = 4866.226301 C = 5253.156915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C -0.102 4.102 4 C -0.097 4.097 5 C -0.098 4.098 6 C -0.114 4.114 7 C -0.153 4.153 8 C 0.506 3.494 9 O -0.598 6.598 10 N -0.579 5.579 11 C 0.261 3.739 12 C -0.528 4.528 13 H 0.048 0.952 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.056 3.944 21 C -0.180 4.180 22 C -0.186 4.186 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.044 0.956 38 H -0.011 1.011 39 H 0.028 0.972 40 H 0.266 0.734 41 H 0.162 0.838 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 11.315 14.868 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.136 4.136 6 C -0.151 4.151 7 C -0.211 4.211 8 C 0.296 3.704 9 O -0.479 6.479 10 N -0.308 5.308 11 C 0.140 3.860 12 C -0.566 4.566 13 H 0.067 0.933 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.047 4.047 21 C -0.217 4.217 22 C -0.225 4.225 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.007 0.993 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.179 0.821 42 H 0.089 0.911 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.779 10.617 14.742 20.177 hybrid contribution 1.380 -0.851 -1.136 1.980 sum -7.399 9.765 13.606 18.309 Atomic orbital electron populations 1.21716 0.93957 1.01734 1.02645 1.21581 0.97236 0.97298 1.00578 1.21686 0.90670 0.97038 1.04551 1.21453 0.99023 1.00449 0.90935 1.21415 0.99248 0.99409 0.93554 1.21543 1.01760 0.99090 0.92754 1.21778 1.00072 1.01017 0.98189 1.21379 0.77157 0.86250 0.85591 1.90622 1.46688 1.23419 1.87195 1.47711 1.62679 1.14043 1.06377 1.18730 0.95090 0.89879 0.82349 1.21633 0.97130 1.27759 1.10111 0.93346 1.25806 1.02384 0.94612 0.96288 1.70060 1.37973 1.31144 1.17717 0.85446 0.79481 0.77975 0.78414 1.19330 1.20842 1.19310 1.22173 1.01866 0.81206 0.99498 1.23279 1.01346 1.03375 0.93709 1.23421 0.95295 0.99476 1.04284 0.92789 0.93320 0.90359 0.96310 0.91805 0.87102 0.90573 0.87176 0.92686 0.94458 0.90803 0.89921 0.90996 0.93255 0.93730 0.99307 0.95374 0.92524 0.82132 0.91072 0.84818 0.84938 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.91 71.98 0.71 -2.23 16 2 C -0.13 -3.46 5.34 30.60 0.16 -3.29 16 3 C -0.10 -2.25 4.58 30.59 0.14 -2.11 16 4 C -0.10 -2.80 1.67 -11.54 -0.02 -2.82 16 5 C -0.10 -2.75 3.85 30.60 0.12 -2.63 16 6 C -0.11 -2.11 5.57 30.60 0.17 -1.94 16 7 C -0.15 -2.73 9.91 71.98 0.71 -2.02 16 8 C 0.51 21.86 5.42 87.66 0.48 22.33 16 9 O -0.60 -32.43 15.56 -3.03 -0.05 -32.48 16 10 N -0.58 -25.48 2.79 -802.13 -2.23 -27.71 16 11 C 0.26 14.54 4.67 85.63 0.40 14.94 16 12 C -0.53 -31.19 8.71 25.60 0.22 -30.97 16 13 H 0.05 2.88 7.21 -2.91 -0.02 2.86 16 14 C 0.01 0.46 5.46 84.66 0.46 0.92 16 15 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 16 Si 0.96 46.36 29.54 68.60 2.03 48.38 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 C 0.06 1.80 5.42 44.99 0.24 2.05 16 21 C -0.18 -5.63 9.74 30.62 0.30 -5.33 16 22 C -0.19 -5.71 10.28 30.62 0.31 -5.40 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.02 0.67 6.82 -2.38 -0.02 0.65 16 27 H 0.06 1.68 6.66 -2.38 -0.02 1.67 16 28 H 0.11 1.64 6.52 -2.39 -0.02 1.62 16 29 H 0.08 1.56 5.96 -2.39 -0.01 1.55 16 30 H 0.11 2.69 7.44 -2.39 -0.02 2.67 16 31 H 0.05 1.71 6.35 -2.39 -0.02 1.70 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.22 6.74 -2.39 -0.02 1.20 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 38 H -0.01 -0.73 7.48 -2.39 -0.02 -0.75 16 39 H 0.03 1.60 5.99 -2.39 -0.01 1.58 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.16 3.69 5.15 -2.39 -0.01 3.68 16 42 H 0.07 2.89 6.11 -2.39 -0.01 2.87 16 43 H 0.13 3.01 8.14 -2.38 -0.02 2.99 16 44 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 45 H 0.07 2.69 6.94 -2.39 -0.02 2.68 16 Total: -1.00 -76.33 348.12 5.40 -70.94 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.95 Total: 16.61 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 4.42 Total: -18.52 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.95 Total: -84.93 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.05 Total: -32.48 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -76.33 5.40 -70.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211851145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.739 kcal (2) G-P(sol) polarization free energy of solvation -76.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds