Wall clock time and date at job start Mon Mar 30 2020 07:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.53006 * 109.47261 * 239.99869 * 2 1 3 5 5 C 1.53002 * 109.47021 * 120.00196 * 2 1 3 6 6 C 1.53000 * 109.47112 * 299.99845 * 5 2 1 7 7 C 1.53004 * 109.47114 * 179.97438 * 5 2 1 8 8 C 1.50703 * 109.47294 * 60.00158 * 5 2 1 9 9 O 1.21280 * 119.99552 * 5.29500 * 8 5 2 10 10 N 1.34777 * 120.00098 * 185.30158 * 8 5 2 11 11 C 1.46500 * 119.99799 * 185.50115 * 10 8 5 12 12 C 1.50703 * 109.46712 * 269.99681 * 11 10 8 13 13 H 1.07996 * 120.00323 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99660 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00030 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99984 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47129 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47064 * 120.00412 * 16 14 12 19 19 H 1.48506 * 109.47161 * 240.00317 * 16 14 12 20 20 C 1.46498 * 119.99721 * 5.49722 * 10 8 5 21 21 C 1.53003 * 117.49664 * 183.77311 * 20 10 8 22 22 C 1.53003 * 117.49609 * 115.11747 * 20 10 8 23 23 H 1.08998 * 109.47119 * 300.00140 * 1 2 3 24 24 H 1.09002 * 109.47070 * 60.00218 * 1 2 3 25 25 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47273 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47225 * 300.00015 * 3 2 1 28 28 H 1.09001 * 109.46598 * 59.99881 * 3 2 1 29 29 H 1.08997 * 109.47206 * 300.00334 * 4 2 1 30 30 H 1.09000 * 109.46436 * 60.00165 * 4 2 1 31 31 H 1.09005 * 109.46990 * 179.97438 * 4 2 1 32 32 H 1.08995 * 109.47158 * 179.97438 * 6 5 2 33 33 H 1.08997 * 109.47140 * 300.00009 * 6 5 2 34 34 H 1.09005 * 109.46781 * 60.00249 * 6 5 2 35 35 H 1.08998 * 109.47632 * 295.05209 * 7 5 2 36 36 H 1.09001 * 109.46645 * 55.05366 * 7 5 2 37 37 H 1.08995 * 109.47107 * 175.04832 * 7 5 2 38 38 H 1.08993 * 109.47378 * 29.99907 * 11 10 8 39 39 H 1.09002 * 109.46750 * 149.99985 * 11 10 8 40 40 H 0.97001 * 120.00419 * 180.02562 * 15 14 12 41 41 H 1.08999 * 115.55475 * 329.44824 * 20 10 8 42 42 H 1.09006 * 117.49785 * 0.02562 * 21 20 10 43 43 H 1.09004 * 117.49937 * 145.01764 * 21 20 10 44 44 H 1.08995 * 117.50157 * 214.97573 * 22 20 10 45 45 H 1.08997 * 117.50031 * 359.97330 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 6 1.5300 -0.0001 2.4985 7 6 3.5700 -0.7219 1.2489 8 6 1.5376 -2.1422 1.2492 9 8 0.9217 -2.5675 0.2950 10 7 1.7728 -2.9401 2.3096 11 6 1.3915 -4.3538 2.2613 12 6 -0.0168 -4.5119 2.7739 13 1 -0.5724 -3.6460 3.1024 14 6 -0.5964 -5.7620 2.8226 15 7 0.0800 -6.8165 2.4222 16 14 -2.3423 -5.9580 3.4573 17 1 -2.8811 -4.6290 3.8425 18 1 -3.1931 -6.5468 2.3920 19 1 -2.3408 -6.8542 4.6415 20 6 2.4098 -2.3937 3.5104 21 6 2.7302 -3.3682 4.6457 22 6 1.5835 -2.3657 4.7978 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1301 -0.7209 -1.2494 32 1 1.8929 -0.5142 3.3884 33 1 1.8933 1.0275 2.4985 34 1 0.4399 -0.0001 2.4985 35 1 3.9330 -1.3108 0.4066 36 1 3.9336 0.3018 1.1601 37 1 3.9333 -1.1570 2.1799 38 1 1.4459 -4.7099 1.2327 39 1 2.0721 -4.9351 2.8835 40 1 -0.3278 -7.6959 2.4561 41 1 3.1056 -1.5720 3.3410 42 1 2.4674 -4.4158 4.4989 43 1 3.6367 -3.1874 5.2233 44 1 1.7360 -1.5258 5.4755 45 1 0.5658 -2.7533 4.7512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310342946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:57 Heat of formation + Delta-G solvation = -0.770567 kcal Electronic energy + Delta-G solvation = -22769.319579 eV Core-core repulsion = 19788.415580 eV Total energy + Delta-G solvation = -2980.903999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52628 -37.55277 -36.26947 -33.13501 -32.58457 -31.30662 -28.31776 -27.40661 -26.93263 -25.61736 -23.65675 -23.09312 -21.86072 -21.09978 -19.15669 -17.75150 -16.45447 -15.96537 -15.59419 -14.74519 -14.56908 -14.27477 -14.03866 -13.91237 -13.78335 -13.46235 -12.76627 -12.56318 -12.20319 -12.01422 -11.87872 -11.56366 -11.49306 -11.36088 -11.26005 -11.11330 -10.97114 -10.92176 -10.72808 -10.60223 -10.41437 -10.27705 -10.13016 -10.02658 -9.96828 -9.68206 -9.38712 -8.41905 -8.41234 -7.44063 -6.02839 -4.06456 3.29795 3.37362 3.39715 3.44988 3.90441 4.41218 4.46151 4.76637 4.93620 5.04802 5.21837 5.30988 5.37350 5.42541 5.43544 5.46330 5.56260 5.67879 5.79685 5.84587 5.90754 5.99472 6.02423 6.11339 6.11581 6.14841 6.16856 6.21492 6.26793 6.31240 6.44858 6.56695 6.61486 6.66241 6.79793 6.91080 6.97365 7.14326 7.47185 7.61971 7.94575 8.25605 8.51293 8.93897 9.18894 9.58409 11.05003 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.006923 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.300471 B = 4043.270570 C = 4565.763544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.038 4.038 3 C -0.144 4.144 4 C -0.158 4.158 5 C -0.072 4.072 6 C -0.165 4.165 7 C -0.149 4.149 8 C 0.522 3.478 9 O -0.529 6.529 10 N -0.568 5.568 11 C 0.243 3.757 12 C -0.516 4.516 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.062 3.938 21 C -0.186 4.186 22 C -0.195 4.195 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.036 0.964 40 H 0.262 0.738 41 H 0.130 0.870 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 14.239 0.896 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.039 4.039 3 C -0.201 4.201 4 C -0.215 4.215 5 C -0.075 4.075 6 C -0.222 4.222 7 C -0.206 4.206 8 C 0.309 3.691 9 O -0.407 6.407 10 N -0.298 5.298 11 C 0.124 3.876 12 C -0.555 4.555 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.043 4.043 21 C -0.223 4.223 22 C -0.233 4.233 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.147 0.853 42 H 0.131 0.869 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.730 13.779 0.348 15.339 hybrid contribution -1.021 -0.198 0.468 1.140 sum 5.709 13.582 0.817 14.755 Atomic orbital electron populations 1.22106 0.94434 1.04219 1.00190 1.20197 0.95987 0.93850 0.93828 1.22020 1.00735 0.95965 1.01351 1.22240 0.99784 1.03804 0.95644 1.20723 0.96286 0.93617 0.96864 1.22438 1.02212 1.00110 0.97445 1.22121 0.93693 1.02278 1.02537 1.20134 0.79751 0.86643 0.82565 1.90524 1.40256 1.75368 1.34507 1.47672 1.57822 1.12116 1.12164 1.19332 0.95349 0.74327 0.98625 1.21442 0.98956 0.93014 1.42124 0.92415 1.24920 0.97837 0.95826 0.95532 1.69936 1.37157 0.98806 1.47604 0.86506 0.84827 0.78056 0.78430 1.19841 1.20966 1.21044 1.22009 0.99957 1.00001 0.82337 1.23361 0.99177 0.98834 1.00930 1.23475 0.98719 1.01263 0.99886 0.93428 0.93663 0.89744 0.92680 0.93020 0.92641 0.88828 0.93850 0.93708 0.89982 0.92271 0.92017 0.91989 0.91676 0.91712 0.94081 0.94604 0.92863 0.85343 0.86863 0.89216 0.89536 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 7.82 37.16 0.29 -2.13 16 2 C -0.04 -0.56 0.32 -154.51 -0.05 -0.60 16 3 C -0.14 -1.65 7.78 37.16 0.29 -1.36 16 4 C -0.16 -2.43 7.82 37.16 0.29 -2.13 16 5 C -0.07 -1.08 0.08 -155.66 -0.01 -1.10 16 6 C -0.17 -2.24 7.34 37.16 0.27 -1.97 16 7 C -0.15 -1.92 7.54 37.16 0.28 -1.64 16 8 C 0.52 10.60 5.86 -10.98 -0.06 10.54 16 9 O -0.53 -12.67 11.02 5.56 0.06 -12.61 16 10 N -0.57 -11.85 2.79 -167.47 -0.47 -12.32 16 11 C 0.24 6.22 4.67 -5.19 -0.02 6.19 16 12 C -0.52 -14.32 8.65 -34.44 -0.30 -14.61 16 13 H 0.06 1.62 7.22 -52.49 -0.38 1.24 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 16 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.06 1.03 3.91 -67.93 -0.27 0.76 16 21 C -0.19 -2.99 9.75 -26.69 -0.26 -3.25 16 22 C -0.19 -3.12 9.40 -26.69 -0.25 -3.37 16 23 H 0.05 0.70 6.43 -51.93 -0.33 0.37 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.66 5.71 -51.93 -0.30 1.36 16 26 H 0.05 0.57 6.32 -51.93 -0.33 0.25 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.59 6.43 -51.93 -0.33 0.26 16 29 H 0.09 1.77 5.32 -51.93 -0.28 1.49 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.62 6.54 -51.93 -0.34 0.28 16 32 H 0.08 1.09 3.45 -51.93 -0.18 0.91 16 33 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16 34 H 0.06 0.92 6.43 -51.93 -0.33 0.59 16 35 H 0.06 0.85 6.71 -51.93 -0.35 0.50 16 36 H 0.06 0.69 6.18 -51.93 -0.32 0.37 16 37 H 0.06 0.79 5.13 -51.93 -0.27 0.52 16 38 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 39 H 0.04 0.93 5.96 -51.93 -0.31 0.62 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.13 1.76 3.54 -51.93 -0.18 1.57 16 42 H 0.11 2.20 6.09 -51.93 -0.32 1.88 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.11 2.11 6.90 -51.93 -0.36 1.75 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -30.51 321.68 -6.62 -37.13 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.88 Total: 4.81 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 0.10 Total: -13.06 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.27 Total: -38.00 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.06 Total: -12.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.51 -6.62 -37.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310342946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.360 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds