Wall clock time and date at job start Mon Mar 30 2020 07:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.53006 * 109.47261 * 239.99869 * 2 1 3 5 5 C 1.53002 * 109.47021 * 120.00196 * 2 1 3 6 6 C 1.53000 * 109.47112 * 299.99845 * 5 2 1 7 7 C 1.53004 * 109.47114 * 179.97438 * 5 2 1 8 8 C 1.50703 * 109.47294 * 60.00158 * 5 2 1 9 9 O 1.21280 * 119.99552 * 5.29500 * 8 5 2 10 10 N 1.34777 * 120.00098 * 185.30158 * 8 5 2 11 11 C 1.46500 * 119.99799 * 185.50115 * 10 8 5 12 12 C 1.50703 * 109.46712 * 269.99681 * 11 10 8 13 13 H 1.07996 * 120.00323 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99660 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00030 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99984 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47129 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47064 * 120.00412 * 16 14 12 19 19 H 1.48506 * 109.47161 * 240.00317 * 16 14 12 20 20 C 1.46498 * 119.99721 * 5.49722 * 10 8 5 21 21 C 1.53003 * 117.49664 * 183.77311 * 20 10 8 22 22 C 1.53003 * 117.49609 * 115.11747 * 20 10 8 23 23 H 1.08998 * 109.47119 * 300.00140 * 1 2 3 24 24 H 1.09002 * 109.47070 * 60.00218 * 1 2 3 25 25 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47273 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47225 * 300.00015 * 3 2 1 28 28 H 1.09001 * 109.46598 * 59.99881 * 3 2 1 29 29 H 1.08997 * 109.47206 * 300.00334 * 4 2 1 30 30 H 1.09000 * 109.46436 * 60.00165 * 4 2 1 31 31 H 1.09005 * 109.46990 * 179.97438 * 4 2 1 32 32 H 1.08995 * 109.47158 * 179.97438 * 6 5 2 33 33 H 1.08997 * 109.47140 * 300.00009 * 6 5 2 34 34 H 1.09005 * 109.46781 * 60.00249 * 6 5 2 35 35 H 1.08998 * 109.47632 * 295.05209 * 7 5 2 36 36 H 1.09001 * 109.46645 * 55.05366 * 7 5 2 37 37 H 1.08995 * 109.47107 * 175.04832 * 7 5 2 38 38 H 1.08993 * 109.47378 * 29.99907 * 11 10 8 39 39 H 1.09002 * 109.46750 * 149.99985 * 11 10 8 40 40 H 0.97001 * 120.00419 * 180.02562 * 15 14 12 41 41 H 1.08999 * 115.55475 * 329.44824 * 20 10 8 42 42 H 1.09006 * 117.49785 * 0.02562 * 21 20 10 43 43 H 1.09004 * 117.49937 * 145.01764 * 21 20 10 44 44 H 1.08995 * 117.50157 * 214.97573 * 22 20 10 45 45 H 1.08997 * 117.50031 * 359.97330 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2492 6 6 1.5300 -0.0001 2.4985 7 6 3.5700 -0.7219 1.2489 8 6 1.5376 -2.1422 1.2492 9 8 0.9217 -2.5675 0.2950 10 7 1.7728 -2.9401 2.3096 11 6 1.3915 -4.3538 2.2613 12 6 -0.0168 -4.5119 2.7739 13 1 -0.5724 -3.6460 3.1024 14 6 -0.5964 -5.7620 2.8226 15 7 0.0800 -6.8165 2.4222 16 14 -2.3423 -5.9580 3.4573 17 1 -2.8811 -4.6290 3.8425 18 1 -3.1931 -6.5468 2.3920 19 1 -2.3408 -6.8542 4.6415 20 6 2.4098 -2.3937 3.5104 21 6 2.7302 -3.3682 4.6457 22 6 1.5835 -2.3657 4.7978 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1301 -0.7209 -1.2494 32 1 1.8929 -0.5142 3.3884 33 1 1.8933 1.0275 2.4985 34 1 0.4399 -0.0001 2.4985 35 1 3.9330 -1.3108 0.4066 36 1 3.9336 0.3018 1.1601 37 1 3.9333 -1.1570 2.1799 38 1 1.4459 -4.7099 1.2327 39 1 2.0721 -4.9351 2.8835 40 1 -0.3278 -7.6959 2.4561 41 1 3.1056 -1.5720 3.3410 42 1 2.4674 -4.4158 4.4989 43 1 3.6367 -3.1874 5.2233 44 1 1.7360 -1.5258 5.4755 45 1 0.5658 -2.7533 4.7512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310342946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:57 Heat of formation + Delta-G solvation = -19.111768 kcal Electronic energy + Delta-G solvation = -22770.114913 eV Core-core repulsion = 19788.415580 eV Total energy + Delta-G solvation = -2981.699334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.92203 -38.92982 -37.77065 -35.17068 -34.05030 -32.85035 -29.46741 -29.25118 -28.08106 -26.77252 -25.34631 -24.68560 -23.21143 -22.44471 -20.65366 -19.11425 -18.63113 -17.41720 -17.00484 -16.60961 -15.92367 -15.71676 -15.54858 -15.15623 -15.09213 -14.65871 -14.48213 -13.92016 -13.65171 -13.37837 -13.28816 -13.01516 -12.91021 -12.74863 -12.70793 -12.64259 -12.42166 -12.35702 -12.09617 -11.99286 -11.94164 -11.80968 -11.72857 -11.33887 -11.31173 -11.15812 -10.87756 -10.63749 -9.96112 -9.14743 -8.21915 -6.34991 1.31085 1.33586 1.44778 1.89459 2.28989 2.43214 3.06034 3.09019 3.55127 3.76501 3.91096 3.97369 4.05779 4.22617 4.23628 4.30664 4.47676 4.57589 4.76865 4.81264 4.84625 4.86167 4.88955 4.92543 4.98139 5.02516 5.08587 5.11718 5.14193 5.17995 5.22811 5.24372 5.29606 5.34865 5.41434 5.49297 5.52173 5.60337 5.67607 5.78390 5.92785 6.08405 6.72458 6.91144 7.30600 7.61595 8.84368 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.006923 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.300471 B = 4043.270570 C = 4565.763544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.040 4.040 3 C -0.136 4.136 4 C -0.155 4.155 5 C -0.063 4.063 6 C -0.163 4.163 7 C -0.147 4.147 8 C 0.507 3.493 9 O -0.577 6.577 10 N -0.578 5.578 11 C 0.261 3.739 12 C -0.523 4.523 13 H 0.048 0.952 14 C 0.007 3.993 15 N -0.929 5.929 16 Si 0.959 3.041 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.054 3.946 21 C -0.185 4.185 22 C -0.187 4.187 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.073 0.927 38 H -0.009 1.009 39 H 0.028 0.972 40 H 0.265 0.735 41 H 0.171 0.829 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 17.725 2.547 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.040 4.040 3 C -0.193 4.193 4 C -0.212 4.212 5 C -0.066 4.066 6 C -0.219 4.219 7 C -0.204 4.204 8 C 0.297 3.703 9 O -0.458 6.458 10 N -0.307 5.307 11 C 0.140 3.860 12 C -0.561 4.561 13 H 0.066 0.934 14 C -0.191 4.191 15 N -0.570 5.570 16 Si 0.784 3.216 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.194 1.194 20 C -0.049 4.049 21 C -0.223 4.223 22 C -0.226 4.226 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.009 0.991 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.187 0.813 42 H 0.089 0.911 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.020 17.290 2.025 19.167 hybrid contribution -1.427 -1.324 -0.103 1.949 sum 6.594 15.966 1.921 17.381 Atomic orbital electron populations 1.22048 0.96031 1.01345 1.01292 1.20265 0.94764 0.96113 0.92892 1.21964 1.01869 0.92864 1.02594 1.22160 1.00681 1.01415 0.96975 1.20761 0.98031 0.89475 0.98326 1.22453 1.01044 1.02071 0.96342 1.22155 0.91257 1.04484 1.02487 1.21337 0.78805 0.88755 0.81367 1.90525 1.42243 1.76809 1.36223 1.47670 1.58341 1.10322 1.14354 1.18729 0.94580 0.77704 0.95021 1.21620 0.99895 0.92787 1.41826 0.93379 1.25779 1.02003 0.95562 0.95770 1.70050 1.38973 0.99299 1.48647 0.85489 0.79661 0.78256 0.78165 1.19383 1.20940 1.19412 1.22493 1.00659 1.01063 0.80703 1.23369 1.01034 0.96475 1.01395 1.23459 0.96459 1.02396 1.00248 0.92348 0.92485 0.94529 0.90769 0.92226 0.91097 0.93290 0.92795 0.92142 0.89454 0.88411 0.93995 0.93377 0.87928 0.90799 0.99141 0.95436 0.92592 0.81310 0.91108 0.84893 0.84998 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 7.82 71.98 0.56 -4.19 16 2 C -0.04 -1.09 0.32 -52.18 -0.02 -1.11 16 3 C -0.14 -2.49 7.78 71.98 0.56 -1.93 16 4 C -0.16 -4.74 7.82 71.98 0.56 -4.18 16 5 C -0.06 -1.79 0.08 -52.92 0.00 -1.79 16 6 C -0.16 -3.83 7.34 71.98 0.53 -3.30 16 7 C -0.15 -3.24 7.54 71.98 0.54 -2.70 16 8 C 0.51 21.33 5.86 87.66 0.51 21.85 16 9 O -0.58 -29.85 11.02 -3.03 -0.03 -29.88 16 10 N -0.58 -24.94 2.79 -802.13 -2.23 -27.17 16 11 C 0.26 14.32 4.67 85.63 0.40 14.72 16 12 C -0.52 -30.57 8.65 25.60 0.22 -30.35 16 13 H 0.05 2.84 7.22 -2.91 -0.02 2.82 16 14 C 0.01 0.43 5.46 84.66 0.46 0.89 16 15 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 16 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 C 0.05 1.71 3.91 44.99 0.18 1.89 16 21 C -0.19 -5.75 9.75 30.62 0.30 -5.46 16 22 C -0.19 -5.68 9.40 30.62 0.29 -5.39 16 23 H 0.06 1.67 6.43 -2.39 -0.02 1.66 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.51 5.71 -2.39 -0.01 1.50 16 26 H 0.07 1.11 6.32 -2.39 -0.02 1.09 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.11 6.43 -2.39 -0.02 1.10 16 29 H 0.05 1.96 5.32 -2.39 -0.01 1.95 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.60 6.54 -2.38 -0.02 1.59 16 32 H 0.09 1.96 3.45 -2.39 -0.01 1.95 16 33 H 0.10 1.59 6.43 -2.39 -0.02 1.57 16 34 H 0.04 1.16 6.43 -2.38 -0.02 1.15 16 35 H 0.05 1.21 6.71 -2.39 -0.02 1.19 16 36 H 0.10 1.54 6.18 -2.39 -0.01 1.53 16 37 H 0.07 1.48 5.13 -2.39 -0.01 1.47 16 38 H -0.01 -0.61 7.50 -2.39 -0.02 -0.63 16 39 H 0.03 1.54 5.96 -2.39 -0.01 1.53 16 40 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.17 3.93 3.54 -2.39 -0.01 3.92 16 42 H 0.07 2.85 6.09 -2.38 -0.01 2.83 16 43 H 0.13 2.96 8.14 -2.38 -0.02 2.94 16 44 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.07 2.70 6.90 -2.39 -0.02 2.68 16 Total: -1.00 -74.11 321.68 6.13 -67.98 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.99 Total: 18.80 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 5.10 Total: -21.05 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.95 Total: -84.18 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.03 Total: -29.88 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -74.11 6.13 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310342946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.865 kcal (2) G-P(sol) polarization free energy of solvation -74.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds