Wall clock time and date at job start Mon Mar 30 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47090 * 2 1 4 4 C 1.53011 * 109.46696 * 185.10667 * 3 2 1 5 5 C 1.50701 * 115.55042 * 297.99014 * 4 3 2 6 6 O 1.21275 * 119.99890 * 115.55735 * 5 4 3 7 7 N 1.34779 * 119.99750 * 295.28103 * 5 4 3 8 8 C 1.46496 * 119.99754 * 178.28259 * 7 5 4 9 9 C 1.50699 * 109.47479 * 89.99796 * 8 7 5 10 10 H 1.07999 * 119.99790 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00230 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99975 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00023 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46976 * 89.99968 * 13 11 9 15 15 H 1.48496 * 109.47192 * 209.99998 * 13 11 9 16 16 H 1.48501 * 109.47292 * 330.00361 * 13 11 9 17 17 C 1.46497 * 120.00155 * 358.28200 * 7 5 4 18 18 C 1.53004 * 109.47313 * 96.77923 * 17 7 5 19 19 C 1.52998 * 109.46866 * 67.69819 * 18 17 7 20 20 C 1.52994 * 109.47237 * 187.69608 * 18 17 7 21 21 C 1.52997 * 117.49698 * 83.66568 * 4 3 2 22 22 C 1.52997 * 117.49428 * 152.31865 * 4 3 2 23 23 H 1.08992 * 109.46968 * 300.00061 * 1 2 3 24 24 H 1.08998 * 109.47025 * 59.99666 * 1 2 3 25 25 H 1.09002 * 109.47535 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46767 * 239.99922 * 2 1 3 27 27 H 1.08998 * 109.47025 * 120.00334 * 2 1 3 28 28 H 1.09000 * 109.47289 * 65.11310 * 3 2 1 29 29 H 1.08995 * 109.47633 * 305.10509 * 3 2 1 30 30 H 1.09002 * 109.47229 * 210.00436 * 8 7 5 31 31 H 1.09005 * 109.47361 * 329.99930 * 8 7 5 32 32 H 0.97003 * 119.99913 * 179.97438 * 12 11 9 33 33 H 1.09003 * 109.46966 * 216.77744 * 17 7 5 34 34 H 1.08998 * 109.47416 * 336.77606 * 17 7 5 35 35 H 1.08997 * 109.46662 * 307.70405 * 18 17 7 36 36 H 1.08997 * 109.47579 * 60.00300 * 19 18 17 37 37 H 1.09004 * 109.47226 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47216 * 299.99982 * 19 18 17 39 39 H 1.09003 * 109.46946 * 64.86429 * 20 18 17 40 40 H 1.09004 * 109.47078 * 184.86183 * 20 18 17 41 41 H 1.08990 * 109.47405 * 304.86479 * 20 18 17 42 42 H 1.08999 * 117.49329 * 215.00065 * 21 4 3 43 43 H 1.09004 * 117.50094 * 0.02562 * 21 4 3 44 44 H 1.09004 * 117.50456 * 359.97438 * 22 4 3 45 45 H 1.09002 * 117.49640 * 144.97473 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5647 1.4442 -0.1284 5 6 4.3123 0.7716 0.9939 6 8 4.9677 -0.2249 0.7743 7 7 4.2570 1.2807 2.2407 8 6 4.9530 0.6057 3.3389 9 6 6.3554 1.1455 3.4522 10 1 6.6943 1.9148 2.7741 11 6 7.2055 0.6580 4.4221 12 7 8.4292 1.1295 4.5212 13 14 6.6191 -0.6720 5.5953 14 1 6.9145 -2.0075 5.0170 15 1 7.3213 -0.5295 6.8960 16 1 5.1553 -0.5365 5.8056 17 6 3.5011 2.5090 2.4975 18 6 2.1072 2.1508 3.0171 19 6 2.2271 1.5213 4.4064 20 6 1.2539 3.4178 3.1032 21 6 4.1552 1.3354 -1.5356 22 6 4.2172 2.6651 -0.7800 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7534 1.9292 0.9322 29 1 1.6040 1.9820 -0.8407 30 1 4.4184 0.7841 4.2720 31 1 4.9909 -0.4656 3.1412 32 1 9.0272 0.7868 5.2038 33 1 4.0239 3.1081 3.2430 34 1 3.4088 3.0789 1.5730 35 1 1.6369 1.4414 2.3362 36 1 2.6975 2.2306 5.0874 37 1 1.2342 1.2657 4.7764 38 1 2.8351 0.6186 4.3451 39 1 1.0965 3.8185 2.1018 40 1 0.2910 3.1773 3.5539 41 1 1.7663 4.1600 3.7151 42 1 5.0845 0.7772 -1.6496 43 1 3.4576 1.2630 -2.3700 44 1 3.5604 3.4668 -1.1176 45 1 5.1871 2.9820 -0.3966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310384815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:32 Heat of formation + Delta-G solvation = -24.010885 kcal Electronic energy + Delta-G solvation = -22326.471686 eV Core-core repulsion = 19344.559911 eV Total energy + Delta-G solvation = -2981.911775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03733 -36.87756 -36.40050 -33.76207 -33.46325 -32.23449 -28.79394 -27.29630 -26.90947 -25.58071 -23.55593 -22.37928 -21.57256 -20.74913 -20.32600 -17.73369 -16.94492 -16.53369 -15.83377 -15.06270 -14.79249 -14.44466 -14.34500 -13.97478 -13.55412 -13.28830 -13.05917 -12.76269 -12.53703 -12.21994 -12.15128 -12.07140 -11.80268 -11.63265 -11.37427 -11.33252 -11.21385 -11.06252 -10.92063 -10.71846 -10.62611 -10.42693 -10.28164 -10.13015 -9.94221 -9.62727 -9.47166 -8.86051 -8.55155 -7.61711 -6.06208 -4.03722 3.29485 3.31955 3.35412 3.37546 3.73198 4.05940 4.41223 4.69679 4.89910 4.99675 5.02447 5.10015 5.13946 5.20631 5.26281 5.29906 5.38838 5.46498 5.71000 5.73897 5.76754 5.78335 5.79372 5.88488 5.89809 5.95265 6.04691 6.05310 6.11428 6.16641 6.21859 6.25777 6.30341 6.34870 6.38040 6.53565 6.63413 6.84930 6.98167 7.42995 7.65776 8.34054 8.50649 8.96801 9.07307 9.54665 11.07418 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.007115 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.595400 B = 3934.612040 C = 4498.410932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.095 4.095 4 C -0.151 4.151 5 C 0.545 3.455 6 O -0.539 6.539 7 N -0.584 5.584 8 C 0.208 3.792 9 C -0.525 4.525 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.873 3.127 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.115 3.885 18 C -0.125 4.125 19 C -0.155 4.155 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.163 4.163 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.235 4.005 -6.882 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.132 4.132 4 C -0.154 4.154 5 C 0.331 3.669 6 O -0.416 6.416 7 N -0.314 5.314 8 C 0.087 3.913 9 C -0.563 4.563 10 H 0.091 0.909 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.700 3.300 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.009 4.009 18 C -0.144 4.144 19 C -0.212 4.212 20 C -0.202 4.202 21 C -0.186 4.186 22 C -0.201 4.201 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.694 3.447 -6.854 18.372 hybrid contribution -0.038 -0.612 0.720 0.946 sum -16.732 2.835 -6.134 18.045 Atomic orbital electron populations 1.21762 0.95979 1.01449 1.01467 1.21470 0.95209 0.96715 1.02719 1.21572 0.90409 0.97669 1.03561 1.21495 0.95601 1.03657 0.94634 1.19287 0.80680 0.84197 0.82766 1.90657 1.41988 1.26284 1.82651 1.47768 1.49666 1.25527 1.08421 1.19876 0.92936 0.93612 0.84833 1.21341 0.95324 1.22816 1.16838 0.90872 1.24846 0.94673 0.96284 0.97228 1.69899 1.06118 1.43173 1.34553 0.86893 0.79327 0.83059 0.80684 1.19979 1.21083 1.19010 1.21597 0.90670 0.87281 1.01395 1.21854 0.96512 0.97830 0.98234 1.22078 1.01091 1.02019 0.96052 1.21794 0.99408 0.97499 1.01517 1.22948 1.03094 0.99659 0.92880 1.23071 1.02547 0.91204 1.03244 0.92814 0.92971 0.92905 0.91809 0.91894 0.89106 0.91600 0.93993 0.94996 0.92640 0.90204 0.90694 0.90058 0.92436 0.93496 0.91222 0.92819 0.92775 0.92400 0.88008 0.88557 0.88347 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.56 5.45 -26.73 -0.15 -1.70 16 3 C -0.10 -1.16 4.48 -26.73 -0.12 -1.28 16 4 C -0.15 -2.32 0.81 -155.66 -0.13 -2.45 16 5 C 0.54 11.35 6.31 -10.98 -0.07 11.28 16 6 O -0.54 -13.72 16.27 5.56 0.09 -13.63 16 7 N -0.58 -12.04 2.42 -175.06 -0.42 -12.47 16 8 C 0.21 5.08 3.46 -5.20 -0.02 5.07 16 9 C -0.52 -15.19 9.94 -34.44 -0.34 -15.54 16 10 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 13 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 14 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 17 C 0.11 1.85 4.43 -4.04 -0.02 1.83 16 18 C -0.13 -1.66 2.14 -90.62 -0.19 -1.85 16 19 C -0.16 -2.25 8.25 37.16 0.31 -1.94 16 20 C -0.14 -1.49 9.08 37.15 0.34 -1.15 16 21 C -0.15 -2.10 9.77 -26.70 -0.26 -2.36 16 22 C -0.16 -2.21 8.97 -26.70 -0.24 -2.45 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.94 7.79 -51.93 -0.40 0.54 16 28 H 0.09 1.07 3.08 -51.93 -0.16 0.91 16 29 H 0.07 0.68 8.11 -51.93 -0.42 0.25 16 30 H 0.04 0.97 4.19 -51.93 -0.22 0.75 16 31 H 0.03 0.85 6.88 -51.93 -0.36 0.49 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 34 H 0.07 1.07 5.46 -51.93 -0.28 0.78 16 35 H 0.08 1.07 5.41 -51.93 -0.28 0.79 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.19 5.31 -51.93 -0.28 0.92 16 39 H 0.05 0.49 7.97 -51.93 -0.41 0.07 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 1.65 7.98 -51.93 -0.41 1.24 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -33.20 345.55 -7.53 -40.73 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.89 Total: 1.90 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -0.62 Total: -11.65 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.35 Total: -39.66 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.20 -7.53 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310384815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.719 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds