Wall clock time and date at job start Mon Mar 30 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47090 * 2 1 4 4 C 1.53011 * 109.46696 * 185.10667 * 3 2 1 5 5 C 1.50701 * 115.55042 * 297.99014 * 4 3 2 6 6 O 1.21275 * 119.99890 * 115.55735 * 5 4 3 7 7 N 1.34779 * 119.99750 * 295.28103 * 5 4 3 8 8 C 1.46496 * 119.99754 * 178.28259 * 7 5 4 9 9 C 1.50699 * 109.47479 * 89.99796 * 8 7 5 10 10 H 1.07999 * 119.99790 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00230 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99975 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00023 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46976 * 89.99968 * 13 11 9 15 15 H 1.48496 * 109.47192 * 209.99998 * 13 11 9 16 16 H 1.48501 * 109.47292 * 330.00361 * 13 11 9 17 17 C 1.46497 * 120.00155 * 358.28200 * 7 5 4 18 18 C 1.53004 * 109.47313 * 96.77923 * 17 7 5 19 19 C 1.52998 * 109.46866 * 67.69819 * 18 17 7 20 20 C 1.52994 * 109.47237 * 187.69608 * 18 17 7 21 21 C 1.52997 * 117.49698 * 83.66568 * 4 3 2 22 22 C 1.52997 * 117.49428 * 152.31865 * 4 3 2 23 23 H 1.08992 * 109.46968 * 300.00061 * 1 2 3 24 24 H 1.08998 * 109.47025 * 59.99666 * 1 2 3 25 25 H 1.09002 * 109.47535 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46767 * 239.99922 * 2 1 3 27 27 H 1.08998 * 109.47025 * 120.00334 * 2 1 3 28 28 H 1.09000 * 109.47289 * 65.11310 * 3 2 1 29 29 H 1.08995 * 109.47633 * 305.10509 * 3 2 1 30 30 H 1.09002 * 109.47229 * 210.00436 * 8 7 5 31 31 H 1.09005 * 109.47361 * 329.99930 * 8 7 5 32 32 H 0.97003 * 119.99913 * 179.97438 * 12 11 9 33 33 H 1.09003 * 109.46966 * 216.77744 * 17 7 5 34 34 H 1.08998 * 109.47416 * 336.77606 * 17 7 5 35 35 H 1.08997 * 109.46662 * 307.70405 * 18 17 7 36 36 H 1.08997 * 109.47579 * 60.00300 * 19 18 17 37 37 H 1.09004 * 109.47226 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47216 * 299.99982 * 19 18 17 39 39 H 1.09003 * 109.46946 * 64.86429 * 20 18 17 40 40 H 1.09004 * 109.47078 * 184.86183 * 20 18 17 41 41 H 1.08990 * 109.47405 * 304.86479 * 20 18 17 42 42 H 1.08999 * 117.49329 * 215.00065 * 21 4 3 43 43 H 1.09004 * 117.50094 * 0.02562 * 21 4 3 44 44 H 1.09004 * 117.50456 * 359.97438 * 22 4 3 45 45 H 1.09002 * 117.49640 * 144.97473 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5647 1.4442 -0.1284 5 6 4.3123 0.7716 0.9939 6 8 4.9677 -0.2249 0.7743 7 7 4.2570 1.2807 2.2407 8 6 4.9530 0.6057 3.3389 9 6 6.3554 1.1455 3.4522 10 1 6.6943 1.9148 2.7741 11 6 7.2055 0.6580 4.4221 12 7 8.4292 1.1295 4.5212 13 14 6.6191 -0.6720 5.5953 14 1 6.9145 -2.0075 5.0170 15 1 7.3213 -0.5295 6.8960 16 1 5.1553 -0.5365 5.8056 17 6 3.5011 2.5090 2.4975 18 6 2.1072 2.1508 3.0171 19 6 2.2271 1.5213 4.4064 20 6 1.2539 3.4178 3.1032 21 6 4.1552 1.3354 -1.5356 22 6 4.2172 2.6651 -0.7800 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.7534 1.9292 0.9322 29 1 1.6040 1.9820 -0.8407 30 1 4.4184 0.7841 4.2720 31 1 4.9909 -0.4656 3.1412 32 1 9.0272 0.7868 5.2038 33 1 4.0239 3.1081 3.2430 34 1 3.4088 3.0789 1.5730 35 1 1.6369 1.4414 2.3362 36 1 2.6975 2.2306 5.0874 37 1 1.2342 1.2657 4.7764 38 1 2.8351 0.6186 4.3451 39 1 1.0965 3.8185 2.1018 40 1 0.2910 3.1773 3.5539 41 1 1.7663 4.1600 3.7151 42 1 5.0845 0.7772 -1.6496 43 1 3.4576 1.2630 -2.3700 44 1 3.5604 3.4668 -1.1176 45 1 5.1871 2.9820 -0.3966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310384815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:31 Heat of formation + Delta-G solvation = -44.480854 kcal Electronic energy + Delta-G solvation = -22327.359330 eV Core-core repulsion = 19344.559911 eV Total energy + Delta-G solvation = -2982.799420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49361 -38.17964 -37.87576 -35.32719 -34.66866 -34.15329 -30.66517 -28.36516 -27.93054 -26.96903 -25.32827 -23.49773 -22.85671 -22.09693 -21.47907 -19.25508 -19.11272 -17.82605 -17.44938 -16.57392 -16.24996 -15.84037 -15.63821 -15.29739 -14.96238 -14.63599 -14.44753 -14.10886 -13.92372 -13.70699 -13.47811 -13.12235 -13.03262 -12.95372 -12.77754 -12.62554 -12.48419 -12.44621 -12.14409 -12.07961 -11.96892 -11.79757 -11.67748 -11.54453 -11.49091 -11.11907 -10.84026 -10.73055 -10.49550 -9.36110 -8.37427 -6.41258 1.26702 1.31132 1.39413 1.74856 2.24709 2.26836 2.80403 2.96694 3.55027 3.71932 3.86604 3.94167 4.02203 4.06467 4.23460 4.25776 4.38245 4.51730 4.64557 4.65824 4.70446 4.71698 4.82754 4.85716 4.89144 4.91268 4.95041 4.99040 5.04922 5.07718 5.09715 5.14630 5.22014 5.27978 5.33282 5.37327 5.43245 5.44523 5.51017 5.61882 5.70955 6.22079 6.58886 6.72918 7.18682 7.43689 8.79854 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.007115 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.595400 B = 3934.612040 C = 4498.410932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.086 4.086 4 C -0.159 4.159 5 C 0.532 3.468 6 O -0.601 6.601 7 N -0.589 5.589 8 C 0.220 3.780 9 C -0.534 4.534 10 H 0.025 0.975 11 C 0.012 3.988 12 N -0.945 5.945 13 Si 0.942 3.058 14 H -0.278 1.278 15 H -0.271 1.271 16 H -0.237 1.237 17 C 0.110 3.890 18 C -0.117 4.117 19 C -0.158 4.158 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.147 4.147 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.027 0.973 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.008 0.992 32 H 0.268 0.732 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.135 0.865 44 H 0.145 0.855 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.254 5.166 -7.246 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.123 4.123 4 C -0.163 4.163 5 C 0.321 3.679 6 O -0.483 6.483 7 N -0.317 5.317 8 C 0.098 3.902 9 C -0.572 4.572 10 H 0.044 0.956 11 C -0.186 4.186 12 N -0.585 5.585 13 Si 0.765 3.235 14 H -0.204 1.204 15 H -0.196 1.196 16 H -0.161 1.161 17 C -0.013 4.013 18 C -0.136 4.136 19 C -0.215 4.215 20 C -0.196 4.196 21 C -0.186 4.186 22 C -0.184 4.184 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.153 0.847 44 H 0.163 0.837 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.755 4.659 -7.217 22.462 hybrid contribution 1.321 -0.937 0.771 1.793 sum -19.434 3.722 -6.446 20.811 Atomic orbital electron populations 1.21714 0.93397 1.01994 1.02875 1.21457 0.97394 0.96704 1.00620 1.21623 0.87409 0.97735 1.05515 1.21481 0.97254 1.04699 0.92821 1.20363 0.80048 0.83607 0.83834 1.90609 1.44807 1.29178 1.83686 1.47870 1.49497 1.26624 1.07736 1.19534 0.91156 0.92319 0.87235 1.21571 0.97899 1.21870 1.15907 0.95646 1.25820 0.94645 0.98854 0.99293 1.70048 1.07637 1.45002 1.35805 0.85796 0.80569 0.78873 0.78277 1.20389 1.19552 1.16055 1.21903 0.91717 0.85365 1.02297 1.21794 0.94843 0.99662 0.97281 1.22080 1.01909 1.00481 0.97036 1.21763 0.99283 0.95464 1.03082 1.23035 1.02479 0.99635 0.93420 1.23187 1.01871 0.91743 1.01579 0.91942 0.90910 0.92947 0.92702 0.95431 0.88426 0.87781 0.91890 0.97440 0.92265 0.91881 0.88357 0.89526 0.92847 0.90905 0.94455 0.90718 0.91021 0.92521 0.91373 0.84727 0.83683 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.12 -2.89 5.45 30.59 0.17 -2.72 16 3 C -0.09 -1.81 4.48 30.60 0.14 -1.67 16 4 C -0.16 -4.72 0.81 -52.93 -0.04 -4.77 16 5 C 0.53 23.05 6.31 87.66 0.55 23.60 16 6 O -0.60 -32.71 16.27 -3.01 -0.05 -32.76 16 7 N -0.59 -25.05 2.42 -826.16 -2.00 -27.05 16 8 C 0.22 11.18 3.46 85.63 0.30 11.48 16 9 C -0.53 -32.66 9.94 25.60 0.25 -32.41 16 10 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 11 C 0.01 0.72 5.47 84.65 0.46 1.18 16 12 N -0.94 -61.24 13.96 21.45 0.30 -60.94 16 13 Si 0.94 45.89 27.47 68.60 1.88 47.78 16 14 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.24 -10.39 6.54 99.48 0.65 -9.74 16 17 C 0.11 3.45 4.43 86.38 0.38 3.83 16 18 C -0.12 -2.81 2.14 -10.79 -0.02 -2.83 16 19 C -0.16 -4.30 8.25 71.98 0.59 -3.70 16 20 C -0.14 -2.26 9.08 71.98 0.65 -1.60 16 21 C -0.15 -4.03 9.77 30.61 0.30 -3.73 16 22 C -0.15 -3.67 8.97 30.61 0.27 -3.40 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.03 0.82 7.79 -2.39 -0.02 0.80 16 28 H 0.10 1.91 3.08 -2.39 -0.01 1.90 16 29 H 0.10 1.49 8.11 -2.39 -0.02 1.47 16 30 H 0.06 2.95 4.19 -2.39 -0.01 2.94 16 31 H 0.01 0.42 6.88 -2.38 -0.02 0.40 16 32 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 33 H 0.06 2.19 8.11 -2.39 -0.02 2.17 16 34 H 0.10 2.60 5.46 -2.39 -0.01 2.58 16 35 H 0.09 2.04 5.41 -2.39 -0.01 2.03 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.24 5.31 -2.38 -0.01 1.23 16 39 H 0.07 0.94 7.97 -2.39 -0.02 0.92 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 2.31 7.98 -2.39 -0.02 2.29 16 43 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.15 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -79.83 345.55 5.75 -74.08 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.89 Total: 17.23 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 4.72 Total: -18.34 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -1.70 Total: -87.99 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.78 kcal Total: -79.83 5.75 -74.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310384815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.602 kcal (2) G-P(sol) polarization free energy of solvation -79.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds