Wall clock time and date at job start Mon Mar 30 2020 07:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47066 * 2 1 4 4 C 1.53002 * 109.46924 * 239.99935 * 2 1 3 5 5 C 1.52995 * 109.47405 * 295.00392 * 4 2 1 6 6 H 1.09006 * 115.54891 * 330.71930 * 5 4 2 7 7 C 1.53001 * 117.50113 * 116.38992 * 5 4 2 8 8 C 1.52996 * 117.50007 * 185.01421 * 5 4 2 9 9 H 1.08996 * 117.50186 * 359.97438 * 8 5 4 10 10 C 1.50706 * 117.49807 * 145.01886 * 8 5 4 11 11 O 1.21273 * 120.00035 * 0.02562 * 10 8 5 12 12 N 1.34778 * 119.99602 * 179.97438 * 10 8 5 13 13 C 1.46505 * 119.99762 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47257 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47033 * 300.00385 * 14 13 12 16 16 C 1.53000 * 109.47097 * 59.99897 * 14 13 12 17 17 C 1.50693 * 109.47164 * 180.02562 * 14 13 12 18 18 H 1.08001 * 120.00237 * 1.35193 * 17 14 13 19 19 C 1.37878 * 120.00143 * 181.34458 * 17 14 13 20 20 N 1.31514 * 120.00363 * 193.97834 * 19 17 14 21 21 Si 1.86807 * 119.99700 * 13.97988 * 19 17 14 22 22 H 1.48502 * 109.46822 * 84.54767 * 21 19 17 23 23 H 1.48497 * 109.46842 * 204.54754 * 21 19 17 24 24 H 1.48496 * 109.46948 * 324.54821 * 21 19 17 25 25 H 1.08995 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46910 * 300.00006 * 1 2 3 27 27 H 1.09007 * 109.46872 * 60.00001 * 1 2 3 28 28 H 1.08997 * 109.46910 * 120.00556 * 2 1 3 29 29 H 1.09002 * 109.47261 * 60.00209 * 3 2 1 30 30 H 1.09002 * 109.46688 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47211 * 299.99892 * 3 2 1 32 32 H 1.09002 * 109.46850 * 54.99933 * 4 2 1 33 33 H 1.08996 * 109.47194 * 174.99958 * 4 2 1 34 34 H 1.09002 * 117.49995 * 214.98211 * 7 5 4 35 35 H 1.08995 * 117.49983 * 359.97438 * 7 5 4 36 36 H 0.96994 * 120.00495 * 0.02562 * 12 10 8 37 37 H 1.09003 * 109.46955 * 300.00779 * 13 12 10 38 38 H 1.09000 * 109.46628 * 60.00430 * 13 12 10 39 39 H 1.09002 * 109.47403 * 69.36583 * 15 14 13 40 40 H 1.09001 * 109.46968 * 189.37026 * 15 14 13 41 41 H 1.09006 * 109.46959 * 309.36433 * 15 14 13 42 42 H 1.09009 * 109.47104 * 60.00056 * 16 14 13 43 43 H 1.09001 * 109.47568 * 180.02562 * 16 14 13 44 44 H 1.09000 * 109.47371 * 300.00523 * 16 14 13 45 45 H 0.97005 * 120.00255 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 1.5383 -2.6152 -0.1867 7 6 0.6792 -2.7109 -2.2657 8 6 2.1540 -3.1170 -2.2936 9 1 2.7834 -2.6731 -3.0649 10 6 2.4923 -4.5360 -1.9150 11 8 2.3492 -4.9086 -0.7699 12 7 2.9530 -5.3911 -2.8494 13 6 3.2824 -6.7704 -2.4813 14 6 3.7797 -7.5232 -3.7169 15 6 2.6850 -7.5281 -4.7859 16 6 5.0276 -6.8305 -4.2681 17 6 4.1179 -8.9420 -3.3384 18 1 3.9702 -9.2799 -2.3233 19 6 4.6157 -9.8089 -4.2879 20 7 4.6530 -11.1007 -4.0440 21 14 5.2372 -9.1485 -5.9211 22 1 6.6485 -8.7106 -5.7730 23 1 5.1555 -10.2161 -6.9500 24 1 4.4018 -7.9939 -6.3383 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 3.1263 -0.6444 -1.2952 34 1 -0.0465 -3.4699 -1.9735 35 1 0.3383 -1.9997 -3.0180 36 1 3.0671 -5.0932 -3.7654 37 1 4.0624 -6.7668 -1.7199 38 1 2.3934 -7.2636 -2.0883 39 1 2.5566 -6.5196 -5.1792 40 1 2.9706 -8.2001 -5.5952 41 1 1.7480 -7.8682 -4.3448 42 1 5.8075 -6.8269 -3.5065 43 1 5.3817 -7.3665 -5.1487 44 1 4.7826 -5.8043 -4.5420 45 1 5.0036 -11.7105 -4.7119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315611806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:49 Heat of formation + Delta-G solvation = -28.486262 kcal Electronic energy + Delta-G solvation = -20632.521599 eV Core-core repulsion = 17650.415756 eV Total energy + Delta-G solvation = -2982.105842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.84137 -37.87345 -36.60964 -34.98960 -33.26606 -31.47815 -27.95917 -27.37332 -26.45582 -26.25340 -25.00594 -23.22749 -21.28358 -20.20958 -19.78534 -19.07215 -17.15360 -16.10885 -15.54685 -15.38978 -15.11591 -14.81352 -14.48435 -14.21333 -13.73560 -13.41401 -13.07111 -12.89087 -12.76704 -12.55031 -12.35305 -12.24053 -12.05577 -12.04420 -11.68682 -11.40232 -11.26957 -11.10901 -10.85805 -10.44848 -10.33631 -10.25800 -10.17555 -10.07710 -10.03445 -9.48680 -9.11361 -8.69339 -8.53081 -8.44000 -6.15470 -4.12769 2.79003 3.23286 3.30271 3.37854 3.53408 3.86713 4.34766 4.46520 4.62819 4.70049 4.84805 4.89013 5.02265 5.15222 5.24032 5.32542 5.41414 5.46842 5.49136 5.58474 5.62408 5.68038 5.77320 5.82252 5.90853 5.96916 6.04741 6.05684 6.08239 6.12723 6.26922 6.35380 6.47811 6.52414 6.62402 6.68745 6.79900 6.97354 7.21380 7.42298 7.71601 7.97072 8.44203 8.63759 8.90012 9.48401 10.97663 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045310 B = 0.003333 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.816834 B = 8399.223876 C = 8546.062329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.085 4.085 5 C -0.116 4.116 6 H 0.117 0.883 7 C -0.150 4.150 8 C -0.190 4.190 9 H 0.119 0.881 10 C 0.534 3.466 11 O -0.550 6.550 12 N -0.718 5.718 13 C 0.142 3.858 14 C 0.029 3.971 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.514 4.514 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.891 5.891 21 Si 0.885 3.115 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.249 1.249 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.397 0.603 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.022 0.978 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.029 0.971 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 22.543 1.586 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.122 4.122 5 C -0.135 4.135 6 H 0.135 0.865 7 C -0.187 4.187 8 C -0.211 4.211 9 H 0.137 0.863 10 C 0.320 3.680 11 O -0.428 6.428 12 N -0.368 5.368 13 C 0.019 3.981 14 C 0.028 3.972 15 C -0.199 4.199 16 C -0.205 4.205 17 C -0.551 4.551 18 H 0.094 0.906 19 C -0.127 4.127 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.213 1.213 23 H -0.234 1.234 24 H -0.175 1.175 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.369 22.045 2.348 23.066 hybrid contribution 0.636 0.216 -1.495 1.639 sum -5.734 22.261 0.853 23.003 Atomic orbital electron populations 1.21851 0.95132 1.02149 1.01273 1.21110 0.96086 0.95840 0.98341 1.21846 1.00958 0.96095 1.01613 1.21285 1.00832 0.92086 0.98039 1.22387 1.01622 0.93814 0.95627 0.86503 1.23067 0.90817 1.03119 1.01717 1.22353 0.99684 0.94524 1.04522 0.86310 1.19598 0.77150 0.85945 0.85334 1.90667 1.53936 1.78378 1.19843 1.46242 1.65617 1.12987 1.11993 1.21511 0.99802 0.78432 0.98317 1.18712 0.91552 0.95815 0.91167 1.22296 0.99620 0.98333 0.99689 1.22362 1.00165 0.97571 1.00364 1.20725 1.44108 0.92011 0.98297 0.90556 1.24976 0.95217 0.94429 0.98113 1.69952 1.45060 1.01967 1.35811 0.87292 0.79421 0.77575 0.83899 1.21347 1.23395 1.17506 0.92145 0.93091 0.92914 0.90990 0.92776 0.92729 0.92806 0.91685 0.91424 0.88385 0.88127 0.76872 0.92040 0.91960 0.95914 0.92524 0.93422 0.92794 0.94027 0.95171 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.01 37.16 0.33 -0.77 16 2 C -0.10 -0.76 2.88 -90.62 -0.26 -1.02 16 3 C -0.15 -1.01 9.19 37.15 0.34 -0.67 16 4 C -0.09 -0.72 4.96 -26.73 -0.13 -0.86 16 5 C -0.12 -1.26 4.24 -90.62 -0.38 -1.64 16 6 H 0.12 1.50 7.60 -51.93 -0.39 1.11 16 7 C -0.15 -1.54 9.88 -26.73 -0.26 -1.80 16 8 C -0.19 -2.29 5.91 -91.77 -0.54 -2.83 16 9 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 10 C 0.53 8.87 7.61 -10.98 -0.08 8.79 16 11 O -0.55 -11.25 16.26 5.56 0.09 -11.16 16 12 N -0.72 -12.00 5.00 -60.29 -0.30 -12.30 16 13 C 0.14 2.89 4.49 -4.04 -0.02 2.87 16 14 C 0.03 0.63 0.50 -155.67 -0.08 0.55 16 15 C -0.14 -2.90 7.53 37.16 0.28 -2.62 16 16 C -0.15 -3.01 7.52 37.16 0.28 -2.73 16 17 C -0.51 -13.88 8.62 -34.44 -0.30 -14.18 16 18 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 19 C 0.08 2.10 5.32 -17.82 -0.09 2.01 16 20 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 21 Si 0.89 21.12 22.79 -169.99 -3.87 17.25 16 22 H -0.29 -6.79 7.10 56.52 0.40 -6.39 16 23 H -0.31 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.25 -5.39 4.65 56.52 0.26 -5.13 16 25 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.49 7.88 -51.93 -0.41 0.09 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.40 5.75 6.26 -40.82 -0.26 5.49 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 40 H 0.06 1.23 4.30 -51.93 -0.22 1.01 16 41 H 0.05 0.97 8.12 -51.93 -0.42 0.54 16 42 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 43 H 0.04 0.89 2.25 -51.93 -0.12 0.78 16 44 H 0.03 0.50 6.86 -51.93 -0.36 0.15 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -30.64 344.35 -7.16 -37.80 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.11 Total: 4.11 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.92 Total: -14.90 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.47 Total: -38.27 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -3.87 Total: 17.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.64 -7.16 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315611806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.310 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds