Wall clock time and date at job start Mon Mar 30 2020 07:55:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53006 * 109.47188 * 2 1
4 4 C 1.53002 * 109.47380 * 240.00118 * 2 1 3
5 5 C 1.50699 * 109.47080 * 59.99651 * 4 2 1
6 6 H 1.08002 * 120.00340 * 0.02562 * 5 4 2
7 7 C 1.37878 * 120.00164 * 180.02562 * 5 4 2
8 8 N 1.31511 * 119.99974 * 0.02562 * 7 5 4
9 9 Si 1.86801 * 120.00299 * 180.02562 * 7 5 4
10 10 H 1.48504 * 109.46752 * 0.02562 * 9 7 5
11 11 H 1.48502 * 109.47343 * 119.99984 * 9 7 5
12 12 H 1.48498 * 109.47195 * 240.00249 * 9 7 5
13 13 C 1.52997 * 109.47054 * 119.99997 * 2 1 3
14 14 N 1.46893 * 109.47508 * 304.99211 * 13 2 1
15 15 C 1.47924 * 111.00036 * 277.42327 * 14 13 2
16 16 C 1.51077 * 110.55839 * 195.91352 * 15 14 13
17 17 O 1.42422 * 105.75335 * 97.59281 * 16 15 14
18 18 C 1.37376 * 119.06544 * 270.87942 * 17 16 15
19 19 C 1.55908 * 107.23318 * 59.38979 * 18 17 16
20 20 C 1.52810 * 116.04582 * 147.92446 * 19 18 17
21 21 C 1.52646 * 116.36437 * 80.02652 * 19 18 17
22 22 C 1.48358 * 111.00233 * 151.98083 * 14 13 2
23 23 H 1.08996 * 109.47463 * 300.00176 * 1 2 3
24 24 H 1.08998 * 109.47089 * 60.00360 * 1 2 3
25 25 H 1.08997 * 109.46937 * 179.97438 * 1 2 3
26 26 H 1.08999 * 109.46945 * 161.45339 * 3 2 1
27 27 H 1.08997 * 109.46697 * 281.45499 * 3 2 1
28 28 H 1.09001 * 109.46726 * 41.45098 * 3 2 1
29 29 H 1.08992 * 109.47265 * 180.02562 * 4 2 1
30 30 H 1.09001 * 109.47123 * 300.00506 * 4 2 1
31 31 H 0.97002 * 120.00373 * 179.97438 * 8 7 5
32 32 H 1.09007 * 109.47261 * 184.99302 * 13 2 1
33 33 H 1.08997 * 109.47315 * 64.99543 * 13 2 1
34 34 H 1.09003 * 109.26119 * 75.63427 * 15 14 13
35 35 H 1.08996 * 109.26146 * 316.18899 * 15 14 13
36 36 H 1.08999 * 110.18429 * 338.52855 * 16 15 14
37 37 H 1.09003 * 110.29454 * 216.70336 * 16 15 14
38 38 H 1.08995 * 109.90015 * 178.82021 * 18 17 16
39 39 H 1.08998 * 109.90370 * 299.95458 * 18 17 16
40 40 H 1.09000 * 117.50889 * 0.63342 * 20 19 18
41 41 H 1.08997 * 117.51217 * 145.72076 * 20 19 18
42 42 H 1.09006 * 117.49687 * 213.76867 * 21 19 18
43 43 H 1.08996 * 117.50237 * 358.80932 * 21 19 18
44 44 H 1.09002 * 108.41429 * 204.69360 * 22 14 13
45 45 H 1.08998 * 108.41451 * 322.10204 * 22 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 1.5377 -0.0108 -2.4797
6 1 0.9170 0.8675 -2.3807
7 6 1.8703 -0.4822 -3.7320
8 7 2.6257 -1.5519 -3.8527
9 14 1.2482 0.3988 -5.2572
10 1 0.4246 1.5665 -4.8530
11 1 2.4035 0.8647 -6.0657
12 1 0.4225 -0.5340 -6.0655
13 6 2.0400 -0.7212 1.2492
14 7 1.4544 -0.1019 2.4456
15 6 2.2126 1.1045 2.8431
16 6 1.8649 1.5077 4.2569
17 8 2.8942 0.9647 5.0780
18 6 2.7477 -0.3060 5.5790
19 6 2.6046 -1.2690 4.3613
20 6 3.1697 -2.6763 4.5488
21 6 3.8988 -1.6683 3.6572
22 6 1.3446 -1.0833 3.5527
23 1 -0.3634 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0276 -0.0005
26 1 3.0797 1.4603 0.3269
27 1 1.9687 1.8531 -1.0072
28 1 1.4349 2.0418 0.6803
29 1 3.1300 -0.7216 -1.2490
30 1 1.6767 -1.7489 -1.2493
31 1 2.8594 -1.8838 -4.7337
32 1 3.1263 -0.6444 1.2951
33 1 1.7515 -1.7715 1.2056
34 1 1.9678 1.9224 2.1654
35 1 3.2804 0.8946 2.7814
36 1 0.8985 1.0907 4.5401
37 1 1.8461 2.5939 4.3465
38 1 3.6256 -0.5771 6.1654
39 1 1.8541 -0.3589 6.2010
40 1 3.6198 -2.9138 5.5127
41 1 2.6481 -3.4978 4.0579
42 1 3.8571 -1.8273 2.5796
43 1 4.8288 -1.2432 4.0344
44 1 0.5496 -0.7579 4.2238
45 1 1.0636 -2.0483 3.1309
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000341564043.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:55:52
Heat of formation + Delta-G solvation = -14.902510 kcal
Electronic energy + Delta-G solvation = -22107.845455 eV
Core-core repulsion = 19126.328649 eV
Total energy + Delta-G solvation = -2981.516806 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.46407 -37.53658 -36.64436 -34.47647 -32.16747 -29.99050 -27.86478 -27.05306
-26.51712 -25.83417 -24.56284 -22.50843 -22.41367 -20.96893 -19.19359 -17.95340
-16.59863 -16.42154 -16.17326 -16.11171 -15.17022 -14.64960 -14.35903 -14.03331
-13.71086 -13.35353 -12.87380 -12.64717 -12.53233 -12.18258 -12.07017 -11.79308
-11.60815 -11.48373 -11.18690 -10.99664 -10.86735 -10.71540 -10.62756 -10.49140
-10.26920 -10.16928 -10.01498 -9.86757 -9.61531 -9.39687 -8.91997 -8.80869
-8.29929 -7.89946 -5.94464 -3.94113 3.33628 3.41504 3.45059 3.47752
3.81008 4.31143 4.50303 4.51426 4.66093 4.81996 4.95352 5.11139
5.28738 5.35414 5.40124 5.41690 5.47098 5.57639 5.65884 5.78585
5.82019 5.87922 5.90966 6.01015 6.03929 6.11503 6.12108 6.19067
6.34068 6.38502 6.61452 6.74076 6.84250 6.90390 7.21736 7.26127
7.31757 7.37101 7.50120 7.59118 7.73928 7.89139 8.06215 8.51213
9.11535 9.68505 11.17293
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.032745 B = 0.004664 C = 0.004370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 854.878262 B = 6002.419078 C = 6406.059260
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.052 4.052
3 C -0.133 4.133
4 C 0.033 3.967
5 C -0.504 4.504
6 H 0.060 0.940
7 C 0.054 3.946
8 N -0.898 5.898
9 Si 0.886 3.114
10 H -0.273 1.273
11 H -0.286 1.286
12 H -0.286 1.286
13 C 0.065 3.935
14 N -0.520 5.520
15 C 0.012 3.988
16 C 0.066 3.934
17 O -0.392 6.392
18 C 0.116 3.884
19 C -0.199 4.199
20 C -0.167 4.167
21 C -0.162 4.162
22 C 0.084 3.916
23 H 0.044 0.956
24 H 0.052 0.948
25 H 0.035 0.965
26 H 0.034 0.966
27 H 0.066 0.934
28 H 0.041 0.959
29 H 0.011 0.989
30 H 0.013 0.987
31 H 0.258 0.742
32 H 0.034 0.966
33 H 0.061 0.939
34 H 0.095 0.905
35 H 0.052 0.948
36 H 0.064 0.936
37 H 0.095 0.905
38 H 0.091 0.909
39 H 0.043 0.957
40 H 0.093 0.907
41 H 0.094 0.906
42 H 0.099 0.901
43 H 0.093 0.907
44 H 0.069 0.931
45 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.658 1.967 18.504 18.620
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.053 4.053
3 C -0.190 4.190
4 C -0.004 4.004
5 C -0.542 4.542
6 H 0.078 0.922
7 C -0.146 4.146
8 N -0.538 5.538
9 Si 0.715 3.285
10 H -0.197 1.197
11 H -0.212 1.212
12 H -0.212 1.212
13 C -0.062 4.062
14 N -0.242 5.242
15 C -0.115 4.115
16 C -0.009 4.009
17 O -0.311 6.311
18 C 0.039 3.961
19 C -0.201 4.201
20 C -0.205 4.205
21 C -0.199 4.199
22 C -0.044 4.044
23 H 0.063 0.937
24 H 0.071 0.929
25 H 0.054 0.946
26 H 0.053 0.947
27 H 0.085 0.915
28 H 0.060 0.940
29 H 0.030 0.970
30 H 0.031 0.969
31 H 0.067 0.933
32 H 0.053 0.947
33 H 0.080 0.920
34 H 0.113 0.887
35 H 0.070 0.930
36 H 0.083 0.917
37 H 0.113 0.887
38 H 0.109 0.891
39 H 0.061 0.939
40 H 0.111 0.889
41 H 0.112 0.888
42 H 0.118 0.882
43 H 0.111 0.889
44 H 0.087 0.913
45 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -0.917 2.126 18.281 18.427
hybrid contribution 0.387 -0.270 -0.874 0.994
sum -0.530 1.855 17.407 17.514
Atomic orbital electron populations
1.21583 0.95133 1.00253 1.00137 1.20572 0.95740 0.95063 0.93923
1.22041 0.98437 0.96693 1.01824 1.19129 0.95863 0.95126 0.90319
1.21274 1.30562 1.11839 0.90573 0.92190 1.25015 0.95429 0.95128
0.99042 1.69977 1.37465 1.23244 1.23132 0.86620 0.78595 0.79764
0.83537 1.19748 1.21211 1.21186 1.22496 0.96322 0.97679 0.89736
1.63145 1.51760 1.05589 1.03745 1.23103 0.97223 0.94653 0.96499
1.22522 0.90665 0.98427 0.89324 1.86217 1.46236 1.30523 1.68092
1.21801 1.00880 0.81545 0.91910 1.23216 0.97338 0.98083 1.01473
1.22949 1.04091 0.91981 1.01443 1.22958 0.95091 1.02527 0.99331
1.21536 0.93699 0.96478 0.92678 0.93694 0.92872 0.94564 0.94659
0.91484 0.93991 0.97029 0.96878 0.93261 0.94732 0.92046 0.88686
0.93012 0.91740 0.88729 0.89099 0.93929 0.88897 0.88762 0.88229
0.88882 0.91281 0.91216
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.21 7.93 37.16 0.29 -1.92 16
2 C -0.05 -1.05 0.61 -154.51 -0.09 -1.14 16
3 C -0.13 -2.51 7.03 37.16 0.26 -2.25 16
4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16
5 C -0.50 -13.83 7.38 -34.44 -0.25 -14.08 16
6 H 0.06 1.61 5.84 -52.49 -0.31 1.30 16
7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16
8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16
9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16
10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16
11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
13 C 0.07 1.13 3.13 -3.83 -0.01 1.11 16
14 N -0.52 -7.56 3.78 -235.02 -0.89 -8.45 16
15 C 0.01 0.17 4.24 -4.23 -0.02 0.15 16
16 C 0.07 0.76 6.57 36.19 0.24 1.00 16
17 O -0.39 -4.85 9.64 -24.31 -0.23 -5.08 16
18 C 0.12 1.23 6.35 38.71 0.25 1.48 16
19 C -0.20 -2.27 1.48 -154.31 -0.23 -2.50 16
20 C -0.17 -1.72 9.86 -26.80 -0.26 -1.99 16
21 C -0.16 -1.98 9.06 -26.89 -0.24 -2.22 16
22 C 0.08 1.07 4.81 -4.09 -0.02 1.05 16
23 H 0.04 0.79 7.47 -51.93 -0.39 0.40 16
24 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16
25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16
26 H 0.03 0.64 7.61 -51.93 -0.40 0.24 16
27 H 0.07 1.41 6.24 -51.93 -0.32 1.09 16
28 H 0.04 0.70 5.90 -51.93 -0.31 0.39 16
29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16
30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
32 H 0.03 0.62 5.99 -51.92 -0.31 0.31 16
33 H 0.06 1.10 7.39 -51.93 -0.38 0.71 16
34 H 0.10 1.33 4.84 -51.93 -0.25 1.08 16
35 H 0.05 0.79 6.80 -51.93 -0.35 0.43 16
36 H 0.06 0.71 6.30 -51.93 -0.33 0.39 16
37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16
38 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16
39 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16
40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
41 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16
42 H 0.10 1.40 5.87 -51.93 -0.31 1.10 16
43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16
44 H 0.07 0.82 6.80 -51.93 -0.35 0.47 16
45 H 0.07 0.92 7.17 -51.93 -0.37 0.55 16
LS Contribution 327.82 15.07 4.94 4.94
Total: -1.00 -29.25 327.82 -8.43 -37.68
By element:
Atomic # 1 Polarization: 7.31 SS G_CDS: -7.65 Total: -0.34 kcal
Atomic # 6 Polarization: -18.84 SS G_CDS: -0.30 Total: -19.15 kcal
Atomic # 7 Polarization: -34.54 SS G_CDS: -0.15 Total: -34.69 kcal
Atomic # 8 Polarization: -4.85 SS G_CDS: -0.23 Total: -5.08 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -29.25 -8.43 -37.68 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000341564043.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.773 kcal
(2) G-P(sol) polarization free energy of solvation -29.251 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.477 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.903 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds