Wall clock time and date at job start Mon Mar 30 2020 07:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47188 * 2 1 4 4 C 1.53002 * 109.47380 * 240.00118 * 2 1 3 5 5 C 1.50699 * 109.47080 * 59.99651 * 4 2 1 6 6 H 1.08002 * 120.00340 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00164 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00299 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46752 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47343 * 119.99984 * 9 7 5 12 12 H 1.48498 * 109.47195 * 240.00249 * 9 7 5 13 13 C 1.52997 * 109.47054 * 119.99997 * 2 1 3 14 14 N 1.46893 * 109.47508 * 304.99211 * 13 2 1 15 15 C 1.47924 * 111.00036 * 277.42327 * 14 13 2 16 16 C 1.51077 * 110.55839 * 195.91352 * 15 14 13 17 17 O 1.42422 * 105.75335 * 97.59281 * 16 15 14 18 18 C 1.37376 * 119.06544 * 270.87942 * 17 16 15 19 19 C 1.55908 * 107.23318 * 59.38979 * 18 17 16 20 20 C 1.52810 * 116.04582 * 147.92446 * 19 18 17 21 21 C 1.52646 * 116.36437 * 80.02652 * 19 18 17 22 22 C 1.48358 * 111.00233 * 151.98083 * 14 13 2 23 23 H 1.08996 * 109.47463 * 300.00176 * 1 2 3 24 24 H 1.08998 * 109.47089 * 60.00360 * 1 2 3 25 25 H 1.08997 * 109.46937 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46945 * 161.45339 * 3 2 1 27 27 H 1.08997 * 109.46697 * 281.45499 * 3 2 1 28 28 H 1.09001 * 109.46726 * 41.45098 * 3 2 1 29 29 H 1.08992 * 109.47265 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47123 * 300.00506 * 4 2 1 31 31 H 0.97002 * 120.00373 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47261 * 184.99302 * 13 2 1 33 33 H 1.08997 * 109.47315 * 64.99543 * 13 2 1 34 34 H 1.09003 * 109.26119 * 75.63427 * 15 14 13 35 35 H 1.08996 * 109.26146 * 316.18899 * 15 14 13 36 36 H 1.08999 * 110.18429 * 338.52855 * 16 15 14 37 37 H 1.09003 * 110.29454 * 216.70336 * 16 15 14 38 38 H 1.08995 * 109.90015 * 178.82021 * 18 17 16 39 39 H 1.08998 * 109.90370 * 299.95458 * 18 17 16 40 40 H 1.09000 * 117.50889 * 0.63342 * 20 19 18 41 41 H 1.08997 * 117.51217 * 145.72076 * 20 19 18 42 42 H 1.09006 * 117.49687 * 213.76867 * 21 19 18 43 43 H 1.08996 * 117.50237 * 358.80932 * 21 19 18 44 44 H 1.09002 * 108.41429 * 204.69360 * 22 14 13 45 45 H 1.08998 * 108.41451 * 322.10204 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3807 7 6 1.8703 -0.4822 -3.7320 8 7 2.6257 -1.5519 -3.8527 9 14 1.2482 0.3988 -5.2572 10 1 0.4246 1.5665 -4.8530 11 1 2.4035 0.8647 -6.0657 12 1 0.4225 -0.5340 -6.0655 13 6 2.0400 -0.7212 1.2492 14 7 1.4544 -0.1019 2.4456 15 6 2.2126 1.1045 2.8431 16 6 1.8649 1.5077 4.2569 17 8 2.8942 0.9647 5.0780 18 6 2.7477 -0.3060 5.5790 19 6 2.6046 -1.2690 4.3613 20 6 3.1697 -2.6763 4.5488 21 6 3.8988 -1.6683 3.6572 22 6 1.3446 -1.0833 3.5527 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.0797 1.4603 0.3269 27 1 1.9687 1.8531 -1.0072 28 1 1.4349 2.0418 0.6803 29 1 3.1300 -0.7216 -1.2490 30 1 1.6767 -1.7489 -1.2493 31 1 2.8594 -1.8838 -4.7337 32 1 3.1263 -0.6444 1.2951 33 1 1.7515 -1.7715 1.2056 34 1 1.9678 1.9224 2.1654 35 1 3.2804 0.8946 2.7814 36 1 0.8985 1.0907 4.5401 37 1 1.8461 2.5939 4.3465 38 1 3.6256 -0.5771 6.1654 39 1 1.8541 -0.3589 6.2010 40 1 3.6198 -2.9138 5.5127 41 1 2.6481 -3.4978 4.0579 42 1 3.8571 -1.8273 2.5796 43 1 4.8288 -1.2432 4.0344 44 1 0.5496 -0.7579 4.2238 45 1 1.0636 -2.0483 3.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341564043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:52 Heat of formation + Delta-G solvation = -14.902510 kcal Electronic energy + Delta-G solvation = -22107.845455 eV Core-core repulsion = 19126.328649 eV Total energy + Delta-G solvation = -2981.516806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.46407 -37.53658 -36.64436 -34.47647 -32.16747 -29.99050 -27.86478 -27.05306 -26.51712 -25.83417 -24.56284 -22.50843 -22.41367 -20.96893 -19.19359 -17.95340 -16.59863 -16.42154 -16.17326 -16.11171 -15.17022 -14.64960 -14.35903 -14.03331 -13.71086 -13.35353 -12.87380 -12.64717 -12.53233 -12.18258 -12.07017 -11.79308 -11.60815 -11.48373 -11.18690 -10.99664 -10.86735 -10.71540 -10.62756 -10.49140 -10.26920 -10.16928 -10.01498 -9.86757 -9.61531 -9.39687 -8.91997 -8.80869 -8.29929 -7.89946 -5.94464 -3.94113 3.33628 3.41504 3.45059 3.47752 3.81008 4.31143 4.50303 4.51426 4.66093 4.81996 4.95352 5.11139 5.28738 5.35414 5.40124 5.41690 5.47098 5.57639 5.65884 5.78585 5.82019 5.87922 5.90966 6.01015 6.03929 6.11503 6.12108 6.19067 6.34068 6.38502 6.61452 6.74076 6.84250 6.90390 7.21736 7.26127 7.31757 7.37101 7.50120 7.59118 7.73928 7.89139 8.06215 8.51213 9.11535 9.68505 11.17293 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032745 B = 0.004664 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.878262 B = 6002.419078 C = 6406.059260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.052 4.052 3 C -0.133 4.133 4 C 0.033 3.967 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.065 3.935 14 N -0.520 5.520 15 C 0.012 3.988 16 C 0.066 3.934 17 O -0.392 6.392 18 C 0.116 3.884 19 C -0.199 4.199 20 C -0.167 4.167 21 C -0.162 4.162 22 C 0.084 3.916 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.011 0.989 30 H 0.013 0.987 31 H 0.258 0.742 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 1.967 18.504 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.190 4.190 4 C -0.004 4.004 5 C -0.542 4.542 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.062 4.062 14 N -0.242 5.242 15 C -0.115 4.115 16 C -0.009 4.009 17 O -0.311 6.311 18 C 0.039 3.961 19 C -0.201 4.201 20 C -0.205 4.205 21 C -0.199 4.199 22 C -0.044 4.044 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.917 2.126 18.281 18.427 hybrid contribution 0.387 -0.270 -0.874 0.994 sum -0.530 1.855 17.407 17.514 Atomic orbital electron populations 1.21583 0.95133 1.00253 1.00137 1.20572 0.95740 0.95063 0.93923 1.22041 0.98437 0.96693 1.01824 1.19129 0.95863 0.95126 0.90319 1.21274 1.30562 1.11839 0.90573 0.92190 1.25015 0.95429 0.95128 0.99042 1.69977 1.37465 1.23244 1.23132 0.86620 0.78595 0.79764 0.83537 1.19748 1.21211 1.21186 1.22496 0.96322 0.97679 0.89736 1.63145 1.51760 1.05589 1.03745 1.23103 0.97223 0.94653 0.96499 1.22522 0.90665 0.98427 0.89324 1.86217 1.46236 1.30523 1.68092 1.21801 1.00880 0.81545 0.91910 1.23216 0.97338 0.98083 1.01473 1.22949 1.04091 0.91981 1.01443 1.22958 0.95091 1.02527 0.99331 1.21536 0.93699 0.96478 0.92678 0.93694 0.92872 0.94564 0.94659 0.91484 0.93991 0.97029 0.96878 0.93261 0.94732 0.92046 0.88686 0.93012 0.91740 0.88729 0.89099 0.93929 0.88897 0.88762 0.88229 0.88882 0.91281 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 7.93 37.16 0.29 -1.92 16 2 C -0.05 -1.05 0.61 -154.51 -0.09 -1.14 16 3 C -0.13 -2.51 7.03 37.16 0.26 -2.25 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.50 -13.83 7.38 -34.44 -0.25 -14.08 16 6 H 0.06 1.61 5.84 -52.49 -0.31 1.30 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.07 1.13 3.13 -3.83 -0.01 1.11 16 14 N -0.52 -7.56 3.78 -235.02 -0.89 -8.45 16 15 C 0.01 0.17 4.24 -4.23 -0.02 0.15 16 16 C 0.07 0.76 6.57 36.19 0.24 1.00 16 17 O -0.39 -4.85 9.64 -24.31 -0.23 -5.08 16 18 C 0.12 1.23 6.35 38.71 0.25 1.48 16 19 C -0.20 -2.27 1.48 -154.31 -0.23 -2.50 16 20 C -0.17 -1.72 9.86 -26.80 -0.26 -1.99 16 21 C -0.16 -1.98 9.06 -26.89 -0.24 -2.22 16 22 C 0.08 1.07 4.81 -4.09 -0.02 1.05 16 23 H 0.04 0.79 7.47 -51.93 -0.39 0.40 16 24 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.64 7.61 -51.93 -0.40 0.24 16 27 H 0.07 1.41 6.24 -51.93 -0.32 1.09 16 28 H 0.04 0.70 5.90 -51.93 -0.31 0.39 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.62 5.99 -51.92 -0.31 0.31 16 33 H 0.06 1.10 7.39 -51.93 -0.38 0.71 16 34 H 0.10 1.33 4.84 -51.93 -0.25 1.08 16 35 H 0.05 0.79 6.80 -51.93 -0.35 0.43 16 36 H 0.06 0.71 6.30 -51.93 -0.33 0.39 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 42 H 0.10 1.40 5.87 -51.93 -0.31 1.10 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 0.82 6.80 -51.93 -0.35 0.47 16 45 H 0.07 0.92 7.17 -51.93 -0.37 0.55 16 LS Contribution 327.82 15.07 4.94 4.94 Total: -1.00 -29.25 327.82 -8.43 -37.68 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.65 Total: -0.34 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.30 Total: -19.15 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.15 Total: -34.69 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.23 Total: -5.08 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.25 -8.43 -37.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341564043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.773 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds