Wall clock time and date at job start Mon Mar 30 2020 07:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47188 * 2 1 4 4 C 1.53002 * 109.47380 * 240.00118 * 2 1 3 5 5 C 1.50699 * 109.47080 * 59.99651 * 4 2 1 6 6 H 1.08002 * 120.00340 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00164 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99974 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00299 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46752 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47343 * 119.99984 * 9 7 5 12 12 H 1.48498 * 109.47195 * 240.00249 * 9 7 5 13 13 C 1.52997 * 109.47054 * 119.99997 * 2 1 3 14 14 N 1.46893 * 109.47508 * 304.99211 * 13 2 1 15 15 C 1.47924 * 111.00036 * 277.42327 * 14 13 2 16 16 C 1.51077 * 110.55839 * 195.91352 * 15 14 13 17 17 O 1.42422 * 105.75335 * 97.59281 * 16 15 14 18 18 C 1.37376 * 119.06544 * 270.87942 * 17 16 15 19 19 C 1.55908 * 107.23318 * 59.38979 * 18 17 16 20 20 C 1.52810 * 116.04582 * 147.92446 * 19 18 17 21 21 C 1.52646 * 116.36437 * 80.02652 * 19 18 17 22 22 C 1.48358 * 111.00233 * 151.98083 * 14 13 2 23 23 H 1.08996 * 109.47463 * 300.00176 * 1 2 3 24 24 H 1.08998 * 109.47089 * 60.00360 * 1 2 3 25 25 H 1.08997 * 109.46937 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46945 * 161.45339 * 3 2 1 27 27 H 1.08997 * 109.46697 * 281.45499 * 3 2 1 28 28 H 1.09001 * 109.46726 * 41.45098 * 3 2 1 29 29 H 1.08992 * 109.47265 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.47123 * 300.00506 * 4 2 1 31 31 H 0.97002 * 120.00373 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47261 * 184.99302 * 13 2 1 33 33 H 1.08997 * 109.47315 * 64.99543 * 13 2 1 34 34 H 1.09003 * 109.26119 * 75.63427 * 15 14 13 35 35 H 1.08996 * 109.26146 * 316.18899 * 15 14 13 36 36 H 1.08999 * 110.18429 * 338.52855 * 16 15 14 37 37 H 1.09003 * 110.29454 * 216.70336 * 16 15 14 38 38 H 1.08995 * 109.90015 * 178.82021 * 18 17 16 39 39 H 1.08998 * 109.90370 * 299.95458 * 18 17 16 40 40 H 1.09000 * 117.50889 * 0.63342 * 20 19 18 41 41 H 1.08997 * 117.51217 * 145.72076 * 20 19 18 42 42 H 1.09006 * 117.49687 * 213.76867 * 21 19 18 43 43 H 1.08996 * 117.50237 * 358.80932 * 21 19 18 44 44 H 1.09002 * 108.41429 * 204.69360 * 22 14 13 45 45 H 1.08998 * 108.41451 * 322.10204 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3807 7 6 1.8703 -0.4822 -3.7320 8 7 2.6257 -1.5519 -3.8527 9 14 1.2482 0.3988 -5.2572 10 1 0.4246 1.5665 -4.8530 11 1 2.4035 0.8647 -6.0657 12 1 0.4225 -0.5340 -6.0655 13 6 2.0400 -0.7212 1.2492 14 7 1.4544 -0.1019 2.4456 15 6 2.2126 1.1045 2.8431 16 6 1.8649 1.5077 4.2569 17 8 2.8942 0.9647 5.0780 18 6 2.7477 -0.3060 5.5790 19 6 2.6046 -1.2690 4.3613 20 6 3.1697 -2.6763 4.5488 21 6 3.8988 -1.6683 3.6572 22 6 1.3446 -1.0833 3.5527 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.0797 1.4603 0.3269 27 1 1.9687 1.8531 -1.0072 28 1 1.4349 2.0418 0.6803 29 1 3.1300 -0.7216 -1.2490 30 1 1.6767 -1.7489 -1.2493 31 1 2.8594 -1.8838 -4.7337 32 1 3.1263 -0.6444 1.2951 33 1 1.7515 -1.7715 1.2056 34 1 1.9678 1.9224 2.1654 35 1 3.2804 0.8946 2.7814 36 1 0.8985 1.0907 4.5401 37 1 1.8461 2.5939 4.3465 38 1 3.6256 -0.5771 6.1654 39 1 1.8541 -0.3589 6.2010 40 1 3.6198 -2.9138 5.5127 41 1 2.6481 -3.4978 4.0579 42 1 3.8571 -1.8273 2.5796 43 1 4.8288 -1.2432 4.0344 44 1 0.5496 -0.7579 4.2238 45 1 1.0636 -2.0483 3.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341564043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:52 Heat of formation + Delta-G solvation = -31.934389 kcal Electronic energy + Delta-G solvation = -22108.584013 eV Core-core repulsion = 19126.328649 eV Total energy + Delta-G solvation = -2982.255364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46175 -38.96051 -37.59849 -35.93073 -34.19238 -31.02177 -29.43784 -28.50378 -28.05664 -27.01651 -26.08065 -24.21253 -23.38423 -22.01792 -20.16851 -19.61635 -18.30857 -17.56252 -17.36590 -17.09287 -16.61066 -16.18522 -15.76196 -15.27146 -14.83746 -14.74027 -14.38795 -14.10054 -13.96219 -13.81922 -13.48558 -13.04333 -12.90738 -12.68302 -12.64290 -12.50812 -12.36418 -12.24352 -12.20778 -11.94192 -11.75177 -11.61872 -11.31605 -11.30722 -10.93072 -10.84660 -10.61520 -10.51351 -10.26180 -9.12609 -8.14322 -6.21197 1.39880 1.40761 1.53221 2.43235 2.58219 2.83508 3.19617 3.27108 3.61090 3.77025 3.88045 4.00852 4.10847 4.16179 4.29797 4.32624 4.44501 4.49562 4.51526 4.65615 4.70384 4.78617 4.80634 4.83403 4.93565 4.96515 4.98615 5.05832 5.08596 5.13353 5.14542 5.19502 5.23690 5.30213 5.52725 5.55028 5.62979 5.68877 5.87791 5.93323 6.11209 6.17776 6.37261 6.71154 6.93893 7.46051 8.98364 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.032745 B = 0.004664 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.878262 B = 6002.419078 C = 6406.059260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.050 4.050 3 C -0.123 4.123 4 C 0.041 3.959 5 C -0.511 4.511 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.082 3.918 14 N -0.519 5.519 15 C 0.015 3.985 16 C 0.071 3.929 17 O -0.405 6.405 18 C 0.115 3.885 19 C -0.198 4.198 20 C -0.149 4.149 21 C -0.179 4.179 22 C 0.083 3.917 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.027 0.973 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.071 0.929 29 H -0.021 1.021 30 H -0.018 1.018 31 H 0.259 0.741 32 H 0.022 0.978 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 3.297 20.382 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.050 4.050 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.549 4.549 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.581 5.581 9 Si 0.782 3.218 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.046 4.046 14 N -0.242 5.242 15 C -0.112 4.112 16 C -0.005 4.005 17 O -0.323 6.323 18 C 0.038 3.962 19 C -0.200 4.200 20 C -0.187 4.187 21 C -0.216 4.216 22 C -0.045 4.045 23 H 0.089 0.911 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.089 0.911 29 H -0.002 1.002 30 H 0.000 1.000 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.095 3.464 20.180 20.582 hybrid contribution 0.780 -0.732 -1.424 1.781 sum -1.315 2.732 18.756 19.000 Atomic orbital electron populations 1.21476 0.94191 0.99847 1.00512 1.20446 0.96345 0.95514 0.92715 1.21937 0.99080 0.95872 1.01106 1.19004 0.93721 0.94030 0.92947 1.21630 1.30064 1.11834 0.91360 0.91527 1.25927 0.95700 0.95903 1.02600 1.70121 1.39014 1.25000 1.23951 0.85519 0.78128 0.78852 0.79313 1.18346 1.20848 1.20809 1.22138 0.95500 0.96767 0.90218 1.63075 1.51293 1.06272 1.03547 1.23107 0.96007 0.93825 0.98263 1.22565 0.90804 0.99655 0.87433 1.86212 1.46797 1.31257 1.68074 1.21970 1.02393 0.80405 0.91426 1.23209 0.95949 0.99287 1.01570 1.23022 1.02663 0.91227 1.01739 1.22853 0.95922 1.04734 0.98134 1.21579 0.94964 0.95614 0.92322 0.91112 0.94448 0.95393 0.94587 0.93817 0.91062 1.00224 0.99988 0.93196 0.95969 0.93243 0.88957 0.94839 0.90801 0.86724 0.87794 0.92141 0.86565 0.88977 0.90957 0.88665 0.89464 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.95 7.93 71.98 0.57 -3.38 16 2 C -0.05 -2.02 0.61 -52.18 -0.03 -2.05 16 3 C -0.12 -4.61 7.03 71.98 0.51 -4.11 16 4 C 0.04 2.15 4.04 29.85 0.12 2.27 16 5 C -0.51 -28.66 7.38 25.60 0.19 -28.47 16 6 H 0.07 3.59 5.84 -2.91 -0.02 3.57 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 8 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 9 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.08 2.90 3.13 86.30 0.27 3.17 16 14 N -0.52 -14.49 3.78 -897.48 -3.39 -17.88 16 15 C 0.02 0.39 4.24 85.48 0.36 0.75 16 16 C 0.07 1.42 6.57 71.36 0.47 1.88 16 17 O -0.40 -8.88 9.64 -109.90 -1.06 -9.94 16 18 C 0.12 2.08 6.35 72.99 0.46 2.55 16 19 C -0.20 -4.17 1.48 -52.05 -0.08 -4.24 16 20 C -0.15 -2.82 9.86 30.55 0.30 -2.52 16 21 C -0.18 -4.33 9.06 30.49 0.28 -4.05 16 22 C 0.08 1.96 4.81 85.33 0.41 2.37 16 23 H 0.07 2.34 7.47 -2.39 -0.02 2.32 16 24 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 25 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.04 1.31 7.61 -2.39 -0.02 1.29 16 27 H 0.04 1.83 6.24 -2.39 -0.01 1.81 16 28 H 0.07 2.24 5.90 -2.39 -0.01 2.23 16 29 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 30 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 32 H 0.02 0.84 5.99 -2.38 -0.01 0.82 16 33 H 0.05 1.84 7.39 -2.39 -0.02 1.82 16 34 H 0.09 2.39 4.84 -2.39 -0.01 2.37 16 35 H 0.03 1.00 6.80 -2.39 -0.02 0.98 16 36 H 0.07 1.35 6.30 -2.39 -0.02 1.34 16 37 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 1.61 8.09 -2.39 -0.02 1.60 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 1.80 8.07 -2.39 -0.02 1.78 16 42 H 0.07 2.14 5.87 -2.38 -0.01 2.13 16 43 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.09 1.79 6.80 -2.39 -0.02 1.77 16 45 H 0.06 1.55 7.17 -2.39 -0.02 1.53 16 Total: -1.00 -64.44 327.82 3.11 -61.34 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.96 Total: 13.12 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 4.29 Total: -35.65 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -3.11 Total: -75.79 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.06 Total: -9.94 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.44 3.11 -61.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341564043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.401 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds