Wall clock time and date at job start Mon Mar 30 2020 07:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46998 * 2 1 4 4 C 1.52995 * 109.47561 * 239.99962 * 2 1 3 5 5 C 1.53004 * 109.47270 * 119.99447 * 2 1 3 6 6 C 1.53005 * 109.46902 * 300.00496 * 5 2 1 7 7 C 1.52994 * 109.47333 * 180.02562 * 5 2 1 8 8 C 1.50706 * 109.46719 * 59.99986 * 5 2 1 9 9 O 1.21278 * 119.99940 * 6.18833 * 8 5 2 10 10 N 1.34770 * 119.99801 * 185.91147 * 8 5 2 11 11 C 1.46503 * 119.99940 * 185.58621 * 10 8 5 12 12 C 1.52995 * 109.47079 * 183.63749 * 11 10 8 13 13 C 1.50704 * 115.55321 * 306.48707 * 12 11 10 14 14 H 1.08003 * 120.00162 * 144.70234 * 13 12 11 15 15 C 1.37872 * 119.99987 * 324.71012 * 13 12 11 16 16 N 1.31518 * 120.00221 * 350.31820 * 15 13 12 17 17 Si 1.86799 * 120.00273 * 170.31750 * 15 13 12 18 18 H 1.48497 * 109.47194 * 89.99834 * 17 15 13 19 19 H 1.48495 * 109.47508 * 209.99940 * 17 15 13 20 20 H 1.48497 * 109.47094 * 330.00057 * 17 15 13 21 21 C 1.53008 * 117.49845 * 160.82120 * 12 11 10 22 22 C 1.53003 * 117.50246 * 92.16318 * 12 11 10 23 23 H 1.09006 * 109.46999 * 300.00193 * 1 2 3 24 24 H 1.09001 * 109.46505 * 59.99994 * 1 2 3 25 25 H 1.08990 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47030 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47050 * 299.99519 * 3 2 1 28 28 H 1.08993 * 109.47441 * 59.99850 * 3 2 1 29 29 H 1.09002 * 109.46843 * 300.00235 * 4 2 1 30 30 H 1.09006 * 109.46920 * 59.99566 * 4 2 1 31 31 H 1.08996 * 109.47684 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46633 * 181.53741 * 6 5 2 33 33 H 1.08999 * 109.46902 * 301.53640 * 6 5 2 34 34 H 1.08991 * 109.47281 * 61.54380 * 6 5 2 35 35 H 1.09006 * 109.47024 * 298.32813 * 7 5 2 36 36 H 1.09000 * 109.47604 * 58.32484 * 7 5 2 37 37 H 1.08999 * 109.47238 * 178.33228 * 7 5 2 38 38 H 0.97000 * 120.00133 * 5.57925 * 10 8 5 39 39 H 1.08996 * 109.46976 * 303.63669 * 11 10 8 40 40 H 1.09007 * 109.47079 * 63.64011 * 11 10 8 41 41 H 0.96993 * 120.00418 * 185.04061 * 16 15 13 42 42 H 1.09000 * 117.49632 * 0.02562 * 21 12 11 43 43 H 1.09004 * 117.49546 * 145.01616 * 21 12 11 44 44 H 1.08998 * 117.49775 * 214.97862 * 22 12 11 45 45 H 1.09004 * 117.49008 * 359.97326 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 6 1.5299 0.0002 2.4985 7 6 3.5700 -0.7206 1.2497 8 6 1.5377 -2.1420 1.2494 9 8 0.9357 -2.5724 0.2885 10 7 1.7622 -2.9360 2.3149 11 6 1.3830 -4.3503 2.2674 12 6 1.6604 -4.9986 3.6252 13 6 3.0613 -4.8268 4.1535 14 1 3.2278 -4.7093 5.2141 15 6 4.1303 -4.8195 3.2829 16 7 3.9541 -5.1504 2.0223 17 14 5.8292 -4.3397 3.8938 18 1 6.5443 -5.5509 4.3699 19 1 6.5958 -3.7158 2.7856 20 1 5.6979 -3.3710 5.0116 21 6 0.9427 -6.3127 3.9404 22 6 0.5190 -5.0209 4.6438 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6768 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.1301 -0.7208 -1.2494 32 1 1.9157 -0.4974 3.3883 33 1 1.8705 1.0355 2.4847 34 1 0.4404 -0.0238 2.5124 35 1 3.9337 -1.2600 0.3751 36 1 3.9331 0.3067 1.2198 37 1 3.9333 -1.2082 2.1543 38 1 2.1749 -2.5711 3.1133 39 1 0.3215 -4.4342 2.0347 40 1 1.9650 -4.8568 1.4973 41 1 4.7170 -5.2163 1.4269 42 1 0.2734 -6.7154 3.1802 43 1 1.4838 -7.0526 4.5302 44 1 0.7813 -4.9115 5.6961 45 1 -0.4294 -4.5732 4.3467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352644527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:32 Heat of formation + Delta-G solvation = -30.079696 kcal Electronic energy + Delta-G solvation = -22496.146409 eV Core-core repulsion = 19513.971471 eV Total energy + Delta-G solvation = -2982.174939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.18253 -37.26882 -36.12423 -33.42450 -32.23426 -31.34465 -28.27752 -27.17691 -26.04512 -25.57553 -25.25547 -22.91160 -21.23383 -19.82151 -19.29368 -17.88107 -16.40022 -15.66715 -15.42736 -14.85150 -14.42508 -14.24553 -14.02274 -13.87804 -13.61115 -13.23900 -12.75272 -12.56530 -12.02458 -11.92281 -11.76764 -11.70200 -11.56758 -11.43966 -11.29574 -11.11495 -11.07294 -10.88503 -10.67281 -10.63526 -10.52237 -10.25481 -10.02534 -10.01186 -9.56059 -9.15949 -8.83973 -8.54225 -8.21538 -7.76629 -6.08186 -4.19427 3.18190 3.27886 3.29290 3.51828 4.16646 4.27399 4.83742 4.91802 5.05872 5.20586 5.43123 5.47266 5.52255 5.56360 5.72393 5.84107 5.85981 5.99291 6.01683 6.06491 6.09138 6.12868 6.16653 6.21168 6.26824 6.32178 6.32580 6.44431 6.55864 6.58039 6.62226 6.63851 6.72625 6.84174 6.90378 6.98873 7.12566 7.27811 7.56125 7.69213 7.91619 8.31429 8.61659 8.81901 9.24408 9.41553 10.87657 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.007267 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.453603 B = 3852.060017 C = 4559.286881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 C -0.145 4.145 4 C -0.158 4.158 5 C -0.071 4.071 6 C -0.146 4.146 7 C -0.141 4.141 8 C 0.517 3.483 9 O -0.556 6.556 10 N -0.686 5.686 11 C 0.162 3.838 12 C 0.039 3.961 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.078 3.922 16 N -0.865 5.865 17 Si 0.886 3.114 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.197 4.197 22 C -0.212 4.212 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.398 0.602 39 H 0.024 0.976 40 H 0.107 0.893 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 10.590 -1.551 10.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.039 4.039 3 C -0.202 4.202 4 C -0.215 4.215 5 C -0.075 4.075 6 C -0.203 4.203 7 C -0.199 4.199 8 C 0.302 3.698 9 O -0.437 6.437 10 N -0.333 5.333 11 C 0.039 3.961 12 C 0.038 3.962 13 C -0.537 4.537 14 H 0.079 0.921 15 C -0.127 4.127 16 N -0.500 5.500 17 Si 0.713 3.287 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.235 4.235 22 C -0.250 4.250 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.233 0.767 39 H 0.043 0.957 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.798 10.290 -2.420 10.935 hybrid contribution 1.201 0.255 0.805 1.468 sum -1.597 10.545 -1.615 10.787 Atomic orbital electron populations 1.22083 0.94660 1.03770 1.00206 1.20200 0.95733 0.93928 0.94014 1.22024 1.00999 0.95897 1.01257 1.22243 1.00086 1.03748 0.95388 1.20733 0.96827 0.93345 0.96546 1.21990 1.01512 1.00454 0.96364 1.21915 0.93030 1.01866 1.03067 1.20184 0.79693 0.87033 0.82887 1.90462 1.42754 1.76035 1.34484 1.45805 1.60420 1.10778 1.16293 1.20984 0.96111 0.79721 0.99255 1.19202 0.91368 0.94513 0.91127 1.20472 0.88847 1.51190 0.93186 0.92119 1.24949 0.98772 0.94348 0.94646 1.69850 1.30472 1.45291 1.04435 0.86685 0.84319 0.79109 0.78610 1.20614 1.20940 1.19643 1.22914 1.05062 0.92221 1.03331 1.22954 0.99930 1.03781 0.98289 0.93488 0.93630 0.90109 0.92563 0.93034 0.92656 0.88700 0.94016 0.93565 0.92061 0.91772 0.92081 0.91896 0.92001 0.91938 0.76700 0.95733 0.87488 0.92660 0.91562 0.90271 0.90691 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 7.82 37.16 0.29 -1.90 16 2 C -0.04 -0.56 0.32 -154.50 -0.05 -0.60 16 3 C -0.14 -1.71 7.77 37.16 0.29 -1.42 16 4 C -0.16 -2.48 7.82 37.16 0.29 -2.19 16 5 C -0.07 -1.12 0.24 -155.66 -0.04 -1.15 16 6 C -0.15 -1.97 7.59 37.16 0.28 -1.69 16 7 C -0.14 -2.18 7.73 37.15 0.29 -1.89 16 8 C 0.52 10.20 5.87 -10.99 -0.06 10.14 16 9 O -0.56 -12.34 11.40 5.56 0.06 -12.28 16 10 N -0.69 -14.34 5.16 -60.29 -0.31 -14.65 16 11 C 0.16 3.79 4.75 -4.04 -0.02 3.77 16 12 C 0.04 0.90 2.00 -155.65 -0.31 0.59 16 13 C -0.50 -12.51 8.27 -34.44 -0.28 -12.80 16 14 H 0.06 1.53 7.83 -52.48 -0.41 1.12 16 15 C 0.08 1.95 5.15 -17.82 -0.09 1.86 16 16 N -0.86 -22.64 10.73 55.43 0.59 -22.05 16 17 Si 0.89 19.63 29.55 -169.99 -5.02 14.60 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.20 -4.33 9.96 -26.69 -0.27 -4.60 16 22 C -0.21 -4.43 9.92 -26.69 -0.26 -4.69 16 23 H 0.05 0.62 6.46 -51.93 -0.34 0.29 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.41 5.74 -51.93 -0.30 1.11 16 26 H 0.06 0.64 6.39 -51.93 -0.33 0.31 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.60 6.39 -51.93 -0.33 0.27 16 29 H 0.09 1.80 5.29 -51.93 -0.27 1.52 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.70 6.47 -51.93 -0.34 0.36 16 32 H 0.06 0.83 7.21 -51.93 -0.37 0.46 16 33 H 0.06 0.73 6.35 -51.93 -0.33 0.40 16 34 H 0.06 0.82 6.51 -51.93 -0.34 0.48 16 35 H 0.06 1.05 6.52 -51.93 -0.34 0.71 16 36 H 0.06 0.79 6.34 -51.93 -0.33 0.46 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.40 8.09 6.89 -40.82 -0.28 7.81 16 39 H 0.02 0.57 8.06 -51.93 -0.42 0.15 16 40 H 0.11 2.85 6.04 -51.92 -0.31 2.53 16 41 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -26.35 335.31 -7.13 -33.48 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -7.56 Total: 12.42 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 0.05 Total: -16.58 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.28 Total: -36.70 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.06 Total: -12.28 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.35 -7.13 -33.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352644527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.399 kcal (2) G-P(sol) polarization free energy of solvation -26.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds