Wall clock time and date at job start Mon Mar 30 2020 07:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46998 * 2 1 4 4 C 1.52995 * 109.47561 * 239.99962 * 2 1 3 5 5 C 1.53004 * 109.47270 * 119.99447 * 2 1 3 6 6 C 1.53005 * 109.46902 * 300.00496 * 5 2 1 7 7 C 1.52994 * 109.47333 * 180.02562 * 5 2 1 8 8 C 1.50706 * 109.46719 * 59.99986 * 5 2 1 9 9 O 1.21278 * 119.99940 * 6.18833 * 8 5 2 10 10 N 1.34770 * 119.99801 * 185.91147 * 8 5 2 11 11 C 1.46503 * 119.99940 * 185.58621 * 10 8 5 12 12 C 1.52995 * 109.47079 * 183.63749 * 11 10 8 13 13 C 1.50704 * 115.55321 * 306.48707 * 12 11 10 14 14 H 1.08003 * 120.00162 * 144.70234 * 13 12 11 15 15 C 1.37872 * 119.99987 * 324.71012 * 13 12 11 16 16 N 1.31518 * 120.00221 * 350.31820 * 15 13 12 17 17 Si 1.86799 * 120.00273 * 170.31750 * 15 13 12 18 18 H 1.48497 * 109.47194 * 89.99834 * 17 15 13 19 19 H 1.48495 * 109.47508 * 209.99940 * 17 15 13 20 20 H 1.48497 * 109.47094 * 330.00057 * 17 15 13 21 21 C 1.53008 * 117.49845 * 160.82120 * 12 11 10 22 22 C 1.53003 * 117.50246 * 92.16318 * 12 11 10 23 23 H 1.09006 * 109.46999 * 300.00193 * 1 2 3 24 24 H 1.09001 * 109.46505 * 59.99994 * 1 2 3 25 25 H 1.08990 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47030 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47050 * 299.99519 * 3 2 1 28 28 H 1.08993 * 109.47441 * 59.99850 * 3 2 1 29 29 H 1.09002 * 109.46843 * 300.00235 * 4 2 1 30 30 H 1.09006 * 109.46920 * 59.99566 * 4 2 1 31 31 H 1.08996 * 109.47684 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46633 * 181.53741 * 6 5 2 33 33 H 1.08999 * 109.46902 * 301.53640 * 6 5 2 34 34 H 1.08991 * 109.47281 * 61.54380 * 6 5 2 35 35 H 1.09006 * 109.47024 * 298.32813 * 7 5 2 36 36 H 1.09000 * 109.47604 * 58.32484 * 7 5 2 37 37 H 1.08999 * 109.47238 * 178.33228 * 7 5 2 38 38 H 0.97000 * 120.00133 * 5.57925 * 10 8 5 39 39 H 1.08996 * 109.46976 * 303.63669 * 11 10 8 40 40 H 1.09007 * 109.47079 * 63.64011 * 11 10 8 41 41 H 0.96993 * 120.00418 * 185.04061 * 16 15 13 42 42 H 1.09000 * 117.49632 * 0.02562 * 21 12 11 43 43 H 1.09004 * 117.49546 * 145.01616 * 21 12 11 44 44 H 1.08998 * 117.49775 * 214.97862 * 22 12 11 45 45 H 1.09004 * 117.49008 * 359.97326 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7211 1.2493 6 6 1.5299 0.0002 2.4985 7 6 3.5700 -0.7206 1.2497 8 6 1.5377 -2.1420 1.2494 9 8 0.9357 -2.5724 0.2885 10 7 1.7622 -2.9360 2.3149 11 6 1.3830 -4.3503 2.2674 12 6 1.6604 -4.9986 3.6252 13 6 3.0613 -4.8268 4.1535 14 1 3.2278 -4.7093 5.2141 15 6 4.1303 -4.8195 3.2829 16 7 3.9541 -5.1504 2.0223 17 14 5.8292 -4.3397 3.8938 18 1 6.5443 -5.5509 4.3699 19 1 6.5958 -3.7158 2.7856 20 1 5.6979 -3.3710 5.0116 21 6 0.9427 -6.3127 3.9404 22 6 0.5190 -5.0209 4.6438 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6768 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.1301 -0.7208 -1.2494 32 1 1.9157 -0.4974 3.3883 33 1 1.8705 1.0355 2.4847 34 1 0.4404 -0.0238 2.5124 35 1 3.9337 -1.2600 0.3751 36 1 3.9331 0.3067 1.2198 37 1 3.9333 -1.2082 2.1543 38 1 2.1749 -2.5711 3.1133 39 1 0.3215 -4.4342 2.0347 40 1 1.9650 -4.8568 1.4973 41 1 4.7170 -5.2163 1.4269 42 1 0.2734 -6.7154 3.1802 43 1 1.4838 -7.0526 4.5302 44 1 0.7813 -4.9115 5.6961 45 1 -0.4294 -4.5732 4.3467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352644527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:31 Heat of formation + Delta-G solvation = -43.659645 kcal Electronic energy + Delta-G solvation = -22496.735280 eV Core-core repulsion = 19513.971471 eV Total energy + Delta-G solvation = -2982.763809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58530 -38.91327 -37.68148 -35.02623 -34.14490 -32.67420 -29.45544 -28.27879 -27.81340 -27.07493 -26.75173 -24.24130 -22.96799 -21.27148 -21.12273 -19.37350 -18.10154 -17.15543 -16.81227 -16.71431 -16.02671 -15.72099 -15.47140 -15.10121 -15.02094 -14.71038 -14.35092 -13.92757 -13.52136 -13.39504 -13.19383 -12.94522 -12.90951 -12.86886 -12.68678 -12.60360 -12.47384 -12.33260 -12.26711 -12.05410 -11.91081 -11.84432 -11.38647 -11.17741 -11.17153 -11.05090 -10.65360 -10.19830 -9.94851 -9.52784 -8.00199 -6.17502 1.41043 1.46434 1.53991 1.96703 2.41580 2.62451 3.07190 3.63565 3.67062 3.89618 3.92626 4.25128 4.28404 4.30885 4.44124 4.53574 4.56494 4.75391 4.77103 4.80757 4.86433 4.87161 4.89305 4.93295 4.95233 4.99195 5.07621 5.10827 5.14739 5.15895 5.19946 5.28972 5.33990 5.37708 5.48640 5.52264 5.60350 5.66452 5.74531 5.94923 6.00888 6.39812 6.79925 7.06309 7.45754 7.65348 8.93390 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.007267 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.453603 B = 3852.060017 C = 4559.286881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.139 4.139 4 C -0.156 4.156 5 C -0.066 4.066 6 C -0.143 4.143 7 C -0.138 4.138 8 C 0.508 3.492 9 O -0.585 6.585 10 N -0.687 5.687 11 C 0.177 3.823 12 C 0.012 3.988 13 C -0.507 4.507 14 H 0.058 0.942 15 C 0.042 3.958 16 N -0.890 5.890 17 Si 0.940 3.060 18 H -0.284 1.284 19 H -0.286 1.286 20 H -0.260 1.260 21 C -0.201 4.201 22 C -0.186 4.186 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.401 0.599 39 H 0.016 0.984 40 H 0.070 0.930 41 H 0.258 0.742 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 13.187 -0.522 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.039 4.039 3 C -0.196 4.196 4 C -0.213 4.213 5 C -0.069 4.069 6 C -0.200 4.200 7 C -0.196 4.196 8 C 0.296 3.704 9 O -0.467 6.467 10 N -0.334 5.334 11 C 0.052 3.948 12 C 0.011 3.989 13 C -0.545 4.545 14 H 0.076 0.924 15 C -0.160 4.160 16 N -0.526 5.526 17 Si 0.766 3.234 18 H -0.210 1.210 19 H -0.212 1.212 20 H -0.184 1.184 21 C -0.239 4.239 22 C -0.223 4.223 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.236 0.764 39 H 0.034 0.966 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.560 12.899 -1.372 13.222 hybrid contribution 1.073 -0.620 0.441 1.316 sum -1.486 12.280 -0.931 12.404 Atomic orbital electron populations 1.22019 0.94797 1.01859 1.01680 1.20254 0.95642 0.95604 0.92447 1.21979 1.01424 0.93416 1.02769 1.22170 1.00116 1.01849 0.97117 1.20772 0.96919 0.90562 0.98622 1.22005 1.01511 1.01788 0.94729 1.21913 0.92693 1.03528 1.01436 1.21078 0.78823 0.88694 0.81825 1.90471 1.43844 1.77096 1.35311 1.45759 1.60802 1.09904 1.16974 1.20582 0.94740 0.81081 0.98348 1.19265 0.91814 0.95874 0.91904 1.20644 0.89782 1.51016 0.93032 0.92379 1.25512 1.01623 0.94272 0.94635 1.70019 1.30837 1.46426 1.05355 0.85832 0.80629 0.78716 0.78251 1.21020 1.21197 1.18377 1.22928 1.05049 0.92246 1.03724 1.22938 0.99267 1.02047 0.98080 0.91878 0.92274 0.93648 0.91859 0.91844 0.90923 0.92563 0.92500 0.93423 0.92327 0.88702 0.92075 0.93895 0.88589 0.93248 0.76359 0.96559 0.91160 0.93234 0.90987 0.90623 0.89699 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 7.82 71.98 0.56 -3.49 16 2 C -0.04 -1.06 0.32 -52.18 -0.02 -1.07 16 3 C -0.14 -2.72 7.77 71.98 0.56 -2.16 16 4 C -0.16 -4.82 7.82 71.98 0.56 -4.26 16 5 C -0.07 -1.97 0.24 -52.93 -0.01 -1.98 16 6 C -0.14 -3.47 7.59 71.98 0.55 -2.92 16 7 C -0.14 -4.06 7.73 71.98 0.56 -3.50 16 8 C 0.51 20.40 5.87 87.66 0.51 20.92 16 9 O -0.58 -27.05 11.40 -3.02 -0.03 -27.08 16 10 N -0.69 -29.21 5.16 -463.06 -2.39 -31.59 16 11 C 0.18 8.50 4.75 86.38 0.41 8.91 16 12 C 0.01 0.57 2.00 -52.92 -0.11 0.46 16 13 C -0.51 -25.38 8.27 25.60 0.21 -25.16 16 14 H 0.06 2.88 7.83 -2.91 -0.02 2.86 16 15 C 0.04 2.11 5.15 84.65 0.44 2.55 16 16 N -0.89 -47.82 10.73 21.45 0.23 -47.59 16 17 Si 0.94 40.17 29.55 68.60 2.03 42.20 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 21 C -0.20 -8.81 9.96 30.62 0.30 -8.50 16 22 C -0.19 -7.53 9.92 30.62 0.30 -7.23 16 23 H 0.06 1.51 6.46 -2.38 -0.02 1.50 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.04 1.59 5.74 -2.39 -0.01 1.57 16 26 H 0.06 1.16 6.39 -2.39 -0.02 1.15 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.19 6.39 -2.39 -0.02 1.18 16 29 H 0.06 2.21 5.29 -2.39 -0.01 2.19 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.05 1.42 6.47 -2.39 -0.02 1.41 16 32 H 0.06 1.45 7.21 -2.38 -0.02 1.44 16 33 H 0.09 1.73 6.35 -2.39 -0.02 1.71 16 34 H 0.06 1.48 6.51 -2.39 -0.02 1.47 16 35 H 0.04 1.41 6.52 -2.38 -0.02 1.40 16 36 H 0.10 2.14 6.34 -2.39 -0.02 2.12 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.40 16.33 6.89 -92.71 -0.64 15.70 16 39 H 0.02 0.79 8.06 -2.39 -0.02 0.77 16 40 H 0.07 3.93 6.04 -2.38 -0.01 3.91 16 41 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 42 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 44 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 45 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -58.04 335.31 5.00 -53.04 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.33 Total: 38.48 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 4.83 Total: -27.45 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.16 Total: -79.18 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.03 Total: -27.08 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -58.04 5.00 -53.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352644527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.377 kcal (2) G-P(sol) polarization free energy of solvation -58.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds