Wall clock time and date at job start Mon Mar 30 2020 07:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46985 * 2 1 4 4 C 1.53000 * 109.47556 * 240.00185 * 2 1 3 5 5 C 1.53003 * 109.47102 * 119.99637 * 2 1 3 6 6 C 1.53005 * 109.46625 * 66.32815 * 5 2 1 7 7 H 1.08995 * 109.99863 * 51.35284 * 6 5 2 8 8 C 1.54338 * 109.99005 * 290.30566 * 6 5 2 9 9 C 1.55153 * 103.02298 * 218.67021 * 8 6 5 10 10 C 1.54913 * 101.58244 * 35.30929 * 9 8 6 11 11 N 1.47022 * 109.87674 * 172.44797 * 6 5 2 12 12 C 1.34785 * 125.64636 * 298.38585 * 11 6 5 13 13 O 1.21277 * 120.00101 * 354.56919 * 12 11 6 14 14 C 1.50696 * 119.99622 * 174.56811 * 12 11 6 15 15 C 1.53003 * 109.46864 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47034 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00180 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99677 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00219 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46939 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46935 * 120.00170 * 20 18 16 23 23 H 1.48494 * 109.47270 * 240.00492 * 20 18 16 24 24 H 1.08995 * 109.47612 * 287.75549 * 1 2 3 25 25 H 1.08996 * 109.47101 * 47.76019 * 1 2 3 26 26 H 1.09005 * 109.46874 * 167.75147 * 1 2 3 27 27 H 1.09005 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47441 * 300.00011 * 3 2 1 29 29 H 1.09004 * 109.47201 * 60.00187 * 3 2 1 30 30 H 1.09003 * 109.46694 * 306.29130 * 4 2 1 31 31 H 1.08998 * 109.47272 * 66.29058 * 4 2 1 32 32 H 1.09006 * 109.46907 * 186.29617 * 4 2 1 33 33 H 1.08994 * 109.47405 * 306.32652 * 5 2 1 34 34 H 1.09004 * 109.46884 * 186.32253 * 5 2 1 35 35 H 1.08996 * 110.84371 * 100.19842 * 8 6 5 36 36 H 1.08995 * 110.66693 * 337.05508 * 8 6 5 37 37 H 1.09001 * 111.00184 * 277.23642 * 9 8 6 38 38 H 1.08995 * 111.03620 * 153.39833 * 9 8 6 39 39 H 1.08996 * 110.36574 * 204.15385 * 10 9 8 40 40 H 1.08998 * 110.36397 * 81.82808 * 10 9 8 41 41 H 1.09005 * 109.47269 * 60.00716 * 14 12 11 42 42 H 1.09000 * 109.47875 * 300.00377 * 14 12 11 43 43 H 1.08994 * 109.46998 * 60.00550 * 15 14 12 44 44 H 1.08995 * 109.47161 * 299.99885 * 15 14 12 45 45 H 0.97003 * 120.00130 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.6638 -2.2023 1.1723 7 1 1.9812 -2.6183 0.2162 8 6 0.1379 -2.3682 1.3336 9 6 0.0151 -3.6512 2.1974 10 6 1.2485 -3.5204 3.1256 11 7 2.3015 -2.9379 2.2740 12 6 3.6291 -3.0555 2.4754 13 8 4.4079 -2.6124 1.6581 14 6 4.1454 -3.7375 3.7160 15 6 5.6754 -3.7373 3.6987 16 6 6.1918 -4.4199 4.9391 17 1 5.4982 -4.8148 5.6667 18 6 7.5498 -4.5412 5.1445 19 7 8.3944 -4.0609 4.2582 20 14 8.1900 -5.3867 6.6823 21 1 7.0444 -5.8349 7.5141 22 1 9.0103 -6.5626 6.2955 23 1 9.0242 -4.4352 7.4594 24 1 -0.3634 0.3134 0.9786 25 1 -0.3633 0.6908 -0.7608 26 1 -0.3633 -1.0043 -0.2180 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.5877 -1.7112 -1.3073 31 1 1.7716 -0.1465 -2.1356 32 1 3.1243 -0.8198 -1.1946 33 1 1.5872 -0.2769 2.1356 34 1 3.1241 -0.6242 1.3077 35 1 -0.3415 -2.5082 0.3648 36 1 -0.2895 -1.5109 1.8535 37 1 0.0844 -4.5464 1.5794 38 1 -0.9099 -3.6476 2.7740 39 1 1.5545 -4.5009 3.4902 40 1 1.0258 -2.8566 3.9610 41 1 3.7830 -4.7652 3.7433 42 1 3.7916 -3.2039 4.5981 43 1 6.0382 -2.7099 3.6712 44 1 6.0288 -4.2713 2.8167 45 1 9.3498 -4.1459 4.4029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360141969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:05 Heat of formation + Delta-G solvation = -61.904644 kcal Electronic energy + Delta-G solvation = -21354.325613 eV Core-core repulsion = 18370.770641 eV Total energy + Delta-G solvation = -2983.554972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20760 -37.97959 -36.40989 -33.43508 -31.67946 -30.82760 -29.97849 -27.58308 -27.32790 -25.71350 -25.59566 -22.91769 -21.53247 -20.37891 -18.92871 -18.30370 -17.00929 -16.32353 -15.67316 -14.85767 -14.78974 -14.48542 -14.39379 -14.18892 -13.88805 -13.53779 -13.24876 -12.77473 -12.62644 -12.31701 -12.18150 -12.07042 -11.89870 -11.76143 -11.65162 -11.24005 -11.08911 -10.93427 -10.85501 -10.75060 -10.57778 -10.55363 -10.48969 -10.37640 -9.91449 -9.60567 -9.10852 -8.92143 -8.32229 -8.24248 -5.93877 -3.98049 3.29004 3.33891 3.36675 3.41384 3.44817 4.47629 4.52911 4.55058 4.63316 4.77581 4.83945 4.95961 5.29401 5.33554 5.37853 5.41102 5.46674 5.50272 5.53859 5.59732 5.65566 5.69862 5.71669 5.75611 5.79043 5.86953 5.94833 5.99464 6.06605 6.08729 6.19012 6.26501 6.28366 6.31498 6.42359 6.44613 6.74603 6.95987 7.77440 7.89796 7.96497 8.10140 8.41663 8.83379 9.10800 9.65356 11.17143 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.004123 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.722143 B = 6788.905010 C = 7476.848129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.065 4.065 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.119 4.119 6 C 0.135 3.865 7 H 0.076 0.924 8 C -0.130 4.130 9 C -0.137 4.137 10 C 0.102 3.898 11 N -0.628 5.628 12 C 0.526 3.474 13 O -0.531 6.531 14 C -0.125 4.125 15 C 0.037 3.963 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.703 5.833 -7.145 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.066 4.066 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.157 4.157 6 C 0.032 3.968 7 H 0.094 0.906 8 C -0.167 4.167 9 C -0.175 4.175 10 C -0.022 4.022 11 N -0.365 5.365 12 C 0.317 3.683 13 O -0.406 6.406 14 C -0.165 4.165 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.968 6.076 -7.605 22.214 hybrid contribution 0.401 -0.438 0.910 1.087 sum -19.567 5.638 -6.695 21.436 Atomic orbital electron populations 1.22316 0.94997 1.02326 1.01313 1.20464 0.95308 0.95407 0.95376 1.21863 1.01382 0.95255 1.01250 1.21949 1.01847 0.99812 0.96484 1.22018 1.02782 0.94110 0.96832 1.21585 0.91715 0.92105 0.91415 0.90647 1.23052 0.95155 0.98089 1.00419 1.22832 0.97799 0.98516 0.98366 1.22234 0.87382 0.98918 0.93637 1.48832 1.05448 1.53952 1.28265 1.21264 0.79339 0.78973 0.88742 1.90656 1.54893 1.48704 1.46357 1.21852 1.02225 0.99431 0.92972 1.18906 0.85799 0.98149 0.97197 1.21262 0.91703 1.37541 1.05870 0.92600 1.25022 0.97096 0.95718 0.96537 1.70010 1.02221 1.45776 1.34837 0.86546 0.78917 0.79294 0.83273 1.19751 1.21027 1.21018 0.92745 0.93261 0.91414 0.92466 0.92888 0.92879 0.92569 0.93059 0.92113 0.92126 0.90358 0.90098 0.90255 0.90786 0.90157 0.90439 0.91745 0.90522 0.90436 0.95860 0.95857 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 7.06 37.15 0.26 -1.03 16 2 C -0.06 -0.69 0.80 -154.51 -0.12 -0.82 16 3 C -0.14 -1.45 8.44 37.16 0.31 -1.14 16 4 C -0.14 -1.58 7.74 37.16 0.29 -1.29 16 5 C -0.12 -1.57 3.99 -26.73 -0.11 -1.68 16 6 C 0.14 1.77 2.56 -66.94 -0.17 1.59 16 7 H 0.08 1.08 6.02 -51.93 -0.31 0.77 16 8 C -0.13 -1.18 4.47 -24.89 -0.11 -1.30 16 9 C -0.14 -1.21 7.09 -24.58 -0.17 -1.38 16 10 C 0.10 1.18 6.65 -2.53 -0.02 1.17 16 11 N -0.63 -9.75 3.06 -163.01 -0.50 -10.25 16 12 C 0.53 10.72 7.55 -10.98 -0.08 10.64 16 13 O -0.53 -12.89 15.16 5.56 0.08 -12.80 16 14 C -0.12 -2.66 4.73 -27.88 -0.13 -2.79 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.76 13.29 55.43 0.74 -27.03 16 20 Si 0.89 21.89 29.54 -169.99 -5.02 16.86 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H 0.05 0.44 7.31 -51.93 -0.38 0.06 16 25 H 0.05 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.07 0.52 4.78 -51.93 -0.25 0.27 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.59 6.46 -51.93 -0.34 0.26 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.77 7.89 -51.93 -0.41 0.36 16 34 H 0.08 1.33 6.84 -51.93 -0.36 0.98 16 35 H 0.08 0.63 6.45 -51.93 -0.34 0.29 16 36 H 0.08 0.67 6.28 -51.93 -0.33 0.34 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.50 7.77 -51.93 -0.40 1.10 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -33.51 343.20 -8.22 -41.72 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -8.10 Total: -2.69 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.59 Total: -10.99 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.24 Total: -37.28 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.51 -8.22 -41.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360141969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.182 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds