Wall clock time and date at job start Mon Mar 30 2020 07:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46985 * 2 1 4 4 C 1.53000 * 109.47556 * 240.00185 * 2 1 3 5 5 C 1.53003 * 109.47102 * 119.99637 * 2 1 3 6 6 C 1.53005 * 109.46625 * 66.32815 * 5 2 1 7 7 H 1.08995 * 109.99863 * 51.35284 * 6 5 2 8 8 C 1.54338 * 109.99005 * 290.30566 * 6 5 2 9 9 C 1.55153 * 103.02298 * 218.67021 * 8 6 5 10 10 C 1.54913 * 101.58244 * 35.30929 * 9 8 6 11 11 N 1.47022 * 109.87674 * 172.44797 * 6 5 2 12 12 C 1.34785 * 125.64636 * 298.38585 * 11 6 5 13 13 O 1.21277 * 120.00101 * 354.56919 * 12 11 6 14 14 C 1.50696 * 119.99622 * 174.56811 * 12 11 6 15 15 C 1.53003 * 109.46864 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.47034 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00180 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99677 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00219 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46939 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46935 * 120.00170 * 20 18 16 23 23 H 1.48494 * 109.47270 * 240.00492 * 20 18 16 24 24 H 1.08995 * 109.47612 * 287.75549 * 1 2 3 25 25 H 1.08996 * 109.47101 * 47.76019 * 1 2 3 26 26 H 1.09005 * 109.46874 * 167.75147 * 1 2 3 27 27 H 1.09005 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47441 * 300.00011 * 3 2 1 29 29 H 1.09004 * 109.47201 * 60.00187 * 3 2 1 30 30 H 1.09003 * 109.46694 * 306.29130 * 4 2 1 31 31 H 1.08998 * 109.47272 * 66.29058 * 4 2 1 32 32 H 1.09006 * 109.46907 * 186.29617 * 4 2 1 33 33 H 1.08994 * 109.47405 * 306.32652 * 5 2 1 34 34 H 1.09004 * 109.46884 * 186.32253 * 5 2 1 35 35 H 1.08996 * 110.84371 * 100.19842 * 8 6 5 36 36 H 1.08995 * 110.66693 * 337.05508 * 8 6 5 37 37 H 1.09001 * 111.00184 * 277.23642 * 9 8 6 38 38 H 1.08995 * 111.03620 * 153.39833 * 9 8 6 39 39 H 1.08996 * 110.36574 * 204.15385 * 10 9 8 40 40 H 1.08998 * 110.36397 * 81.82808 * 10 9 8 41 41 H 1.09005 * 109.47269 * 60.00716 * 14 12 11 42 42 H 1.09000 * 109.47875 * 300.00377 * 14 12 11 43 43 H 1.08994 * 109.46998 * 60.00550 * 15 14 12 44 44 H 1.08995 * 109.47161 * 299.99885 * 15 14 12 45 45 H 0.97003 * 120.00130 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 6 1.6638 -2.2023 1.1723 7 1 1.9812 -2.6183 0.2162 8 6 0.1379 -2.3682 1.3336 9 6 0.0151 -3.6512 2.1974 10 6 1.2485 -3.5204 3.1256 11 7 2.3015 -2.9379 2.2740 12 6 3.6291 -3.0555 2.4754 13 8 4.4079 -2.6124 1.6581 14 6 4.1454 -3.7375 3.7160 15 6 5.6754 -3.7373 3.6987 16 6 6.1918 -4.4199 4.9391 17 1 5.4982 -4.8148 5.6667 18 6 7.5498 -4.5412 5.1445 19 7 8.3944 -4.0609 4.2582 20 14 8.1900 -5.3867 6.6823 21 1 7.0444 -5.8349 7.5141 22 1 9.0103 -6.5626 6.2955 23 1 9.0242 -4.4352 7.4594 24 1 -0.3634 0.3134 0.9786 25 1 -0.3633 0.6908 -0.7608 26 1 -0.3633 -1.0043 -0.2180 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.5877 -1.7112 -1.3073 31 1 1.7716 -0.1465 -2.1356 32 1 3.1243 -0.8198 -1.1946 33 1 1.5872 -0.2769 2.1356 34 1 3.1241 -0.6242 1.3077 35 1 -0.3415 -2.5082 0.3648 36 1 -0.2895 -1.5109 1.8535 37 1 0.0844 -4.5464 1.5794 38 1 -0.9099 -3.6476 2.7740 39 1 1.5545 -4.5009 3.4902 40 1 1.0258 -2.8566 3.9610 41 1 3.7830 -4.7652 3.7433 42 1 3.7916 -3.2039 4.5981 43 1 6.0382 -2.7099 3.6712 44 1 6.0288 -4.2713 2.8167 45 1 9.3498 -4.1459 4.4029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360141969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:04 Heat of formation + Delta-G solvation = -82.325208 kcal Electronic energy + Delta-G solvation = -21355.211115 eV Core-core repulsion = 18370.770641 eV Total energy + Delta-G solvation = -2984.440474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41629 -39.31177 -37.48060 -35.59969 -33.30197 -32.29282 -31.10409 -28.41810 -28.24319 -27.62524 -26.57726 -24.49089 -22.90936 -21.57928 -19.99906 -19.56522 -18.79635 -17.81690 -17.13882 -16.51337 -16.31366 -15.89998 -15.44371 -15.30052 -14.95657 -14.49504 -14.40985 -14.20251 -14.06672 -13.75062 -13.52901 -13.24116 -12.94218 -12.89789 -12.83912 -12.62509 -12.55620 -12.45606 -12.10266 -11.98073 -11.75832 -11.62518 -11.60869 -11.43614 -11.37155 -11.29940 -11.21509 -10.62692 -10.60067 -9.54821 -8.19961 -6.34725 1.40612 1.42639 1.56008 1.69520 2.08327 2.42091 3.12864 3.56306 3.69098 3.75485 3.90955 3.95264 4.08522 4.20114 4.38049 4.40424 4.45347 4.48282 4.53344 4.62863 4.68109 4.76711 4.86486 4.87916 4.90539 4.92446 4.98133 5.03191 5.09519 5.10615 5.14195 5.17581 5.27358 5.36572 5.43567 5.45234 5.48058 5.58373 5.58939 5.64660 5.82013 6.14827 6.56878 6.83774 7.28573 7.35974 8.93153 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027479 B = 0.004123 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.722143 B = 6788.905010 C = 7476.848129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.063 4.063 3 C -0.140 4.140 4 C -0.142 4.142 5 C -0.113 4.113 6 C 0.127 3.873 7 H 0.058 0.942 8 C -0.118 4.118 9 C -0.125 4.125 10 C 0.087 3.913 11 N -0.621 5.621 12 C 0.520 3.480 13 O -0.587 6.587 14 C -0.112 4.112 15 C 0.045 3.955 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.976 3.024 21 H -0.252 1.252 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.097 0.903 43 H -0.021 1.021 44 H -0.020 1.020 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.526 5.124 -5.737 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.152 4.152 6 C 0.024 3.976 7 H 0.076 0.924 8 C -0.156 4.156 9 C -0.163 4.163 10 C -0.035 4.035 11 N -0.355 5.355 12 C 0.311 3.689 13 O -0.468 6.468 14 C -0.151 4.151 15 C 0.007 3.993 16 C -0.581 4.581 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.800 3.200 21 H -0.175 1.175 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.116 0.884 43 H -0.002 1.002 44 H -0.001 1.001 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.876 5.360 -6.185 25.239 hybrid contribution 1.585 -0.181 0.422 1.650 sum -22.291 5.179 -5.764 23.599 Atomic orbital electron populations 1.22266 0.92111 1.03542 1.02398 1.20472 0.97484 0.94853 0.93553 1.21875 0.99894 0.95552 1.02460 1.21939 0.99625 1.00658 0.97700 1.21946 0.99580 0.94996 0.98672 1.21839 0.94686 0.91294 0.89778 0.92415 1.23075 0.91261 0.99098 1.02144 1.22850 0.97476 0.98187 0.97806 1.22659 0.87333 0.99174 0.94339 1.48789 1.04519 1.52959 1.29261 1.21023 0.81021 0.78849 0.88017 1.90635 1.56958 1.51209 1.47957 1.21585 0.97710 1.01309 0.94522 1.18671 0.90391 0.94743 0.95485 1.21722 0.92540 1.37481 1.06330 0.90621 1.26168 0.97453 0.96328 1.00492 1.70194 1.02740 1.47344 1.37559 0.85238 0.78620 0.77838 0.78330 1.17507 1.20494 1.20525 0.91796 0.91985 0.90205 0.94932 0.91059 0.92214 0.91994 0.91195 0.95606 0.91452 0.95530 0.87773 0.88573 0.90645 0.86730 0.90117 0.90138 0.88313 0.88448 1.00224 1.00122 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 7.06 71.98 0.51 -1.46 16 2 C -0.06 -1.30 0.80 -52.18 -0.04 -1.35 16 3 C -0.14 -2.90 8.44 71.98 0.61 -2.29 16 4 C -0.14 -3.17 7.74 71.98 0.56 -2.61 16 5 C -0.11 -3.07 3.99 30.60 0.12 -2.95 16 6 C 0.13 3.24 2.56 45.35 0.12 3.36 16 7 H 0.06 1.69 6.02 -2.39 -0.01 1.68 16 8 C -0.12 -1.71 4.47 31.79 0.14 -1.57 16 9 C -0.13 -1.67 7.09 31.99 0.23 -1.44 16 10 C 0.09 1.78 6.65 86.86 0.58 2.36 16 11 N -0.62 -19.19 3.06 -788.02 -2.41 -21.60 16 12 C 0.52 22.28 7.55 87.65 0.66 22.94 16 13 O -0.59 -31.14 15.16 -3.02 -0.05 -31.19 16 14 C -0.11 -4.86 4.73 29.85 0.14 -4.72 16 15 C 0.04 2.62 4.26 29.85 0.13 2.74 16 16 C -0.54 -31.90 9.11 25.60 0.23 -31.67 16 17 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 18 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 19 N -0.94 -60.95 13.29 21.45 0.28 -60.67 16 20 Si 0.98 45.11 29.54 68.60 2.03 47.13 16 21 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 24 H 0.06 0.77 7.31 -2.39 -0.02 0.75 16 25 H 0.06 0.72 8.09 -2.39 -0.02 0.70 16 26 H 0.08 0.88 4.78 -2.38 -0.01 0.87 16 27 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.06 1.28 6.46 -2.39 -0.02 1.27 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.07 1.68 7.89 -2.39 -0.02 1.66 16 34 H 0.03 0.98 6.84 -2.39 -0.02 0.97 16 35 H 0.10 1.11 6.45 -2.39 -0.02 1.09 16 36 H 0.10 1.14 6.28 -2.39 -0.02 1.13 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.63 7.51 -2.39 -0.02 1.61 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 3.83 7.77 -2.38 -0.02 3.81 16 42 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 43 H -0.02 -1.37 8.10 -2.39 -0.02 -1.39 16 44 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 45 H 0.26 15.91 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -79.86 343.20 5.23 -74.63 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.93 Total: 10.31 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 4.44 Total: -18.62 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.13 Total: -82.27 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.05 Total: -31.19 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -79.86 5.23 -74.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360141969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.691 kcal (2) G-P(sol) polarization free energy of solvation -79.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds