Wall clock time and date at job start Mon Mar 30 2020 09:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47392 * 2 1 4 4 C 1.53006 * 109.46886 * 120.00457 * 2 1 3 5 5 H 1.08993 * 109.46765 * 299.99413 * 4 2 1 6 6 C 1.52999 * 109.47000 * 59.99999 * 4 2 1 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47127 * 299.99539 * 7 6 4 9 9 C 1.53002 * 109.46817 * 60.00361 * 8 7 6 10 10 C 1.52996 * 109.46972 * 299.99733 * 9 8 7 11 11 H 1.09001 * 109.46993 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47249 * 299.99946 * 10 9 8 13 13 C 1.34779 * 120.00442 * 275.00281 * 12 10 9 14 14 O 1.21283 * 119.99840 * 359.97438 * 13 12 10 15 15 C 1.50697 * 120.00429 * 179.97438 * 13 12 10 16 16 C 1.52995 * 109.47288 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.46967 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00259 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99913 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99987 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00021 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47206 * 90.00159 * 21 19 17 23 23 H 1.48504 * 109.47084 * 209.99956 * 21 19 17 24 24 H 1.48496 * 109.47062 * 329.99998 * 21 19 17 25 25 H 1.08996 * 109.46698 * 299.99777 * 1 2 3 26 26 H 1.09002 * 109.47097 * 59.99758 * 1 2 3 27 27 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47006 * 240.00223 * 2 1 3 29 29 H 1.09004 * 109.46998 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47722 * 300.00185 * 3 2 1 31 31 H 1.09004 * 109.46862 * 60.00135 * 3 2 1 32 32 H 1.08993 * 109.47839 * 60.00073 * 6 4 2 33 33 H 1.09000 * 109.47160 * 299.99635 * 6 4 2 34 34 H 1.09001 * 109.46801 * 59.99811 * 7 6 4 35 35 H 1.09001 * 109.46998 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 37 37 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 38 38 H 1.08996 * 109.47407 * 60.00219 * 9 8 7 39 39 H 1.09000 * 109.46986 * 179.97438 * 9 8 7 40 40 H 0.97007 * 120.00094 * 95.00567 * 12 10 9 41 41 H 1.08999 * 109.47057 * 300.00510 * 15 13 12 42 42 H 1.09006 * 109.46887 * 59.99709 * 15 13 12 43 43 H 1.08991 * 109.47558 * 300.00129 * 16 15 13 44 44 H 1.09002 * 109.46824 * 60.00614 * 16 15 13 45 45 H 0.97001 * 120.00012 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1639 1.2491 7 6 2.0394 -2.8850 2.4987 8 6 3.5694 -2.8851 2.4993 9 6 4.0794 -1.4425 2.4994 10 6 3.5700 -0.7215 1.2499 11 1 3.9337 0.3061 1.2497 12 7 4.0588 -1.4122 0.0540 13 6 5.2810 -1.1265 -0.4371 14 8 5.9760 -0.2972 0.1109 15 6 5.7841 -1.8374 -1.6669 16 6 7.1865 -1.3315 -2.0106 17 6 7.6898 -2.0430 -3.2401 18 1 7.0711 -2.7818 -3.7278 19 6 8.9401 -1.7508 -3.7423 20 7 9.3792 -2.3713 -4.8156 21 14 10.0106 -0.4736 -2.8984 22 1 10.8517 -1.1350 -1.8686 23 1 10.8840 0.1829 -3.9041 24 1 9.1470 0.5467 -2.2515 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4423 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.8932 -2.6777 0.3592 33 1 0.4399 -2.1638 1.2491 34 1 1.6757 -2.3710 3.3884 35 1 1.6757 -3.9125 2.4989 36 1 3.9324 -3.3992 3.3893 37 1 3.9330 -3.3990 1.6095 38 1 3.7158 -0.9286 3.3892 39 1 5.1694 -1.4426 2.5003 40 1 3.5028 -2.0752 -0.3846 41 1 5.8207 -2.9101 -1.4770 42 1 5.1119 -1.6390 -2.5017 43 1 7.1495 -0.2590 -2.2006 44 1 7.8589 -1.5297 -1.1758 45 1 10.2590 -2.1660 -5.1687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361856494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:10 Heat of formation + Delta-G solvation = -102.124881 kcal Electronic energy + Delta-G solvation = -21482.076540 eV Core-core repulsion = 18496.777488 eV Total energy + Delta-G solvation = -2985.299052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48301 -39.48305 -35.96028 -35.54637 -34.61981 -33.30628 -31.19107 -30.10486 -27.98579 -27.83462 -24.03361 -23.78178 -22.89210 -21.43809 -20.76955 -19.97050 -19.24597 -17.78038 -16.87177 -16.62542 -16.37292 -16.14986 -15.76301 -15.09758 -14.75018 -14.73595 -14.51289 -14.30670 -14.12462 -14.09562 -13.39818 -13.23505 -13.11169 -13.05288 -12.92537 -12.69252 -12.19622 -12.08969 -11.98803 -11.96886 -11.93578 -11.77964 -11.51529 -11.41024 -11.35924 -11.02447 -10.78909 -10.75419 -10.66857 -9.89718 -8.32509 -6.35189 1.31739 1.33567 1.48981 1.75505 2.33904 2.34775 3.03246 3.63686 3.71664 3.85420 4.05078 4.10412 4.21315 4.27201 4.37125 4.39699 4.47060 4.49980 4.57268 4.67595 4.69851 4.74878 4.81036 4.87338 4.97857 5.00758 5.05706 5.08143 5.14481 5.24092 5.25087 5.28765 5.33024 5.38103 5.42530 5.44190 5.48329 5.55079 5.59593 5.60809 5.71684 6.22939 6.65951 6.71049 7.30269 7.38900 8.83284 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.004429 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.464972 B = 6320.769978 C = 6644.440419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.077 4.077 5 H 0.093 0.907 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.129 4.129 10 C 0.146 3.854 11 H 0.064 0.936 12 N -0.707 5.707 13 C 0.515 3.485 14 O -0.587 6.587 15 C -0.118 4.118 16 C 0.007 3.993 17 C -0.529 4.529 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.943 5.943 21 Si 0.937 3.063 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.263 1.263 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.409 0.591 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.008 0.992 44 H 0.006 0.994 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.235 1.514 15.881 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.096 4.096 5 H 0.112 0.888 6 C -0.153 4.153 7 C -0.150 4.150 8 C -0.155 4.155 9 C -0.168 4.168 10 C 0.042 3.958 11 H 0.082 0.918 12 N -0.360 5.360 13 C 0.303 3.697 14 O -0.467 6.467 15 C -0.158 4.158 16 C -0.031 4.031 17 C -0.567 4.567 18 H 0.068 0.932 19 C -0.182 4.182 20 N -0.584 5.584 21 Si 0.762 3.238 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.188 1.188 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.247 0.753 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.621 2.091 16.156 27.071 hybrid contribution 1.036 0.251 -0.328 1.115 sum -20.585 2.341 15.828 26.072 Atomic orbital electron populations 1.21854 0.93630 1.02570 1.01959 1.21115 0.96743 0.95388 0.97704 1.21880 0.99945 0.96905 1.01998 1.21427 0.91447 0.97462 0.99258 0.88842 1.21675 1.01665 0.93724 0.98230 1.21515 0.93977 1.01075 0.98462 1.21489 0.96956 0.95330 1.01692 1.21887 0.99466 0.97462 0.97942 1.21041 0.94831 0.95795 0.84142 0.91800 1.46000 1.16740 1.43532 1.29738 1.21095 0.81439 0.81751 0.85441 1.90626 1.57752 1.36035 1.62285 1.21491 0.98205 1.01129 0.94968 1.19190 0.93408 0.95775 0.94700 1.21435 1.01611 1.22638 1.11003 0.93185 1.25779 0.99240 0.97924 0.95294 1.70023 1.19991 1.44302 1.24077 0.85844 0.79018 0.80289 0.78648 1.19375 1.20212 1.18777 0.92067 0.92967 0.91268 0.91913 0.94833 0.92801 0.91822 0.92092 0.89478 0.91094 0.90940 0.91876 0.92875 0.89960 0.94690 0.75282 0.88293 0.88284 0.97350 0.97511 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.84 71.98 0.64 -1.07 16 2 C -0.09 -1.46 2.35 -10.79 -0.03 -1.48 16 3 C -0.15 -2.89 8.84 71.98 0.64 -2.26 16 4 C -0.08 -1.17 1.57 -10.79 -0.02 -1.19 16 5 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 6 C -0.12 -1.39 4.68 30.60 0.14 -1.24 16 7 C -0.11 -1.40 5.92 30.60 0.18 -1.22 16 8 C -0.12 -2.07 5.77 30.59 0.18 -1.89 16 9 C -0.13 -2.82 5.60 30.59 0.17 -2.65 16 10 C 0.15 3.30 1.88 44.99 0.08 3.39 16 11 H 0.06 1.80 5.86 -2.39 -0.01 1.79 16 12 N -0.71 -18.00 3.54 -442.54 -1.57 -19.57 16 13 C 0.51 18.61 7.79 87.66 0.68 19.29 16 14 O -0.59 -26.38 15.64 -3.04 -0.05 -26.43 16 15 C -0.12 -4.59 5.64 29.85 0.17 -4.42 16 16 C 0.01 0.37 3.33 29.85 0.10 0.47 16 17 C -0.53 -31.03 9.66 25.60 0.25 -30.78 16 18 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 19 C 0.02 0.92 5.47 84.65 0.46 1.39 16 20 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 21 Si 0.94 47.57 27.47 68.60 1.88 49.45 16 22 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.26 -13.37 6.54 99.48 0.65 -12.72 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.68 6.43 -2.39 -0.02 0.66 16 28 H 0.06 1.14 7.45 -2.38 -0.02 1.13 16 29 H 0.03 0.83 6.43 -2.39 -0.02 0.82 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 0.77 6.51 -2.39 -0.02 0.75 16 33 H 0.09 0.78 6.43 -2.39 -0.02 0.77 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.06 7.60 -2.39 -0.02 1.04 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.41 8.24 6.65 -92.70 -0.62 7.63 16 41 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 42 H 0.10 3.52 8.14 -2.38 -0.02 3.51 16 43 H 0.01 0.44 7.16 -2.39 -0.02 0.42 16 44 H 0.01 0.35 7.52 -2.39 -0.02 0.33 16 45 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -72.01 340.76 4.49 -67.52 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.27 Total: 12.05 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 3.65 Total: -23.67 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.27 Total: -78.92 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.88 Total: 49.45 kcal Total: -72.01 4.49 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361856494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.602 kcal (2) G-P(sol) polarization free energy of solvation -72.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds