Wall clock time and date at job start Mon Mar 30 2020 09:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47157 * 2 1 4 4 C 1.53004 * 109.47348 * 120.00501 * 2 1 3 5 5 H 1.09000 * 109.47340 * 185.46808 * 4 2 1 6 6 C 1.52998 * 109.46585 * 305.46568 * 4 2 1 7 7 C 1.53005 * 109.46943 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47119 * 300.00464 * 7 6 4 9 9 C 1.52993 * 109.47285 * 59.99815 * 8 7 6 10 10 C 1.52994 * 109.47198 * 299.99824 * 9 8 7 11 11 H 1.09000 * 109.47084 * 300.00049 * 10 9 8 12 12 N 1.46500 * 109.47348 * 180.02562 * 10 9 8 13 13 C 1.34780 * 120.00223 * 86.59539 * 12 10 9 14 14 O 1.21281 * 119.99576 * 0.02562 * 13 12 10 15 15 C 1.50694 * 120.00263 * 179.97438 * 13 12 10 16 16 C 1.52994 * 109.47280 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47220 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00036 * 359.97438 * 17 16 15 19 19 C 1.37886 * 120.00020 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99814 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99857 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46707 * 90.00167 * 21 19 17 23 23 H 1.48497 * 109.47180 * 209.99827 * 21 19 17 24 24 H 1.48497 * 109.47169 * 330.00470 * 21 19 17 25 25 H 1.08999 * 109.47062 * 59.99764 * 1 2 3 26 26 H 1.08997 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46782 * 299.99838 * 1 2 3 28 28 H 1.09007 * 109.46799 * 240.00461 * 2 1 3 29 29 H 1.09004 * 109.47307 * 174.21952 * 3 2 1 30 30 H 1.09001 * 109.47468 * 294.22229 * 3 2 1 31 31 H 1.09004 * 109.46961 * 54.22375 * 3 2 1 32 32 H 1.09000 * 109.47970 * 300.00180 * 6 4 2 33 33 H 1.09003 * 109.47519 * 60.00361 * 6 4 2 34 34 H 1.09000 * 109.46572 * 60.00821 * 7 6 4 35 35 H 1.09001 * 109.47103 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46571 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47174 * 299.99128 * 8 7 6 38 38 H 1.09001 * 109.47159 * 179.97438 * 9 8 7 39 39 H 1.09000 * 109.47143 * 59.99836 * 9 8 7 40 40 H 0.97005 * 120.00105 * 266.60090 * 12 10 9 41 41 H 1.09002 * 109.47787 * 300.00622 * 15 13 12 42 42 H 1.09002 * 109.47017 * 60.00620 * 15 13 12 43 43 H 1.09001 * 109.47445 * 300.00210 * 16 15 13 44 44 H 1.08997 * 109.47334 * 60.00723 * 16 15 13 45 45 H 0.97008 * 119.99802 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 3.1257 -0.6373 1.2995 6 6 1.4210 -0.0839 2.4946 7 6 1.9305 -0.8056 3.7438 8 6 1.5354 -2.2821 3.6766 9 6 2.1545 -2.9195 2.4312 10 6 1.6449 -2.1979 1.1820 11 1 0.5593 -2.2816 1.1315 12 7 2.2373 -2.8086 -0.0106 13 6 1.6490 -3.8775 -0.5833 14 8 0.6290 -4.3335 -0.1115 15 6 2.2580 -4.5054 -1.8104 16 6 1.4002 -5.6914 -2.2556 17 6 2.0095 -6.3197 -3.4823 18 1 2.9176 -5.9134 -3.9027 19 6 1.4072 -7.4127 -4.0687 20 7 1.9387 -7.9606 -5.1396 21 14 -0.1638 -8.1150 -3.3420 22 1 -1.3371 -7.4481 -3.9617 23 1 -0.2246 -9.5741 -3.6111 24 1 -0.1788 -7.8809 -1.8757 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1251 1.4442 0.1035 30 1 1.7636 1.9256 -0.9372 31 1 1.5947 1.9853 0.8338 32 1 1.7020 0.9682 2.5424 33 1 0.3353 -0.1679 2.4444 34 1 3.0161 -0.7218 3.7944 35 1 1.4898 -0.3511 4.6312 36 1 1.8988 -2.7963 4.5664 37 1 0.4497 -2.3658 3.6262 38 1 1.8733 -3.9716 2.3835 39 1 3.2401 -2.8358 2.4817 40 1 3.0530 -2.4438 -0.3881 41 1 2.3021 -3.7682 -2.6121 42 1 3.2654 -4.8517 -1.5794 43 1 1.3557 -6.4289 -1.4541 44 1 0.3929 -5.3449 -2.4867 45 1 1.5151 -8.7297 -5.5519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361856495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:15 Heat of formation + Delta-G solvation = -84.573962 kcal Electronic energy + Delta-G solvation = -21291.757323 eV Core-core repulsion = 18307.219336 eV Total energy + Delta-G solvation = -2984.537987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27148 -38.38983 -35.12149 -33.96714 -33.43478 -31.31966 -29.86342 -29.00513 -27.35196 -25.94384 -23.72441 -22.63372 -20.92372 -20.53060 -19.72834 -18.98656 -17.16286 -16.29109 -15.91841 -15.24679 -15.08463 -14.74730 -14.28511 -14.21776 -14.03786 -13.59119 -13.35764 -12.87130 -12.78425 -12.75396 -12.53890 -12.27216 -12.04582 -11.67275 -11.50633 -11.40325 -11.26882 -11.01734 -10.93182 -10.91050 -10.49057 -10.35500 -10.15839 -10.09478 -10.00422 -9.75587 -9.18127 -9.09602 -8.73453 -8.48578 -6.01169 -3.99577 3.19571 3.39364 3.45708 3.52192 3.57199 4.40705 4.49672 4.52837 4.61548 4.84371 4.94803 4.99067 5.16154 5.20964 5.28864 5.32642 5.34536 5.37036 5.48485 5.53084 5.53537 5.60860 5.73650 5.74658 5.81084 5.89704 5.92274 5.97839 6.01253 6.09221 6.12146 6.14070 6.19344 6.19982 6.29560 6.38013 6.73420 6.79137 7.39813 7.46947 7.80404 7.88294 8.52937 8.74066 9.02333 9.62171 11.11742 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.004189 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.595415 B = 6682.893431 C = 7137.226256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.087 4.087 5 H 0.073 0.927 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.130 4.130 10 C 0.148 3.852 11 H 0.089 0.911 12 N -0.736 5.736 13 C 0.511 3.489 14 O -0.542 6.542 15 C -0.123 4.123 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.396 0.604 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.023 0.977 44 H 0.018 0.982 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 19.430 16.451 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.106 4.106 5 H 0.091 0.909 6 C -0.152 4.152 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.169 4.169 10 C 0.043 3.957 11 H 0.107 0.893 12 N -0.389 5.389 13 C 0.299 3.701 14 O -0.418 6.418 15 C -0.163 4.163 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.230 0.770 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.041 0.959 44 H 0.037 0.963 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.637 18.936 16.651 25.224 hybrid contribution -0.322 -0.292 0.038 0.436 sum 0.316 18.644 16.689 25.024 Atomic orbital electron populations 1.21944 0.95231 1.02265 1.01465 1.21125 0.96205 0.95830 0.97974 1.21875 1.00750 0.96161 1.01608 1.21453 1.00381 0.93724 0.95077 0.90882 1.21649 1.00955 0.99156 0.93408 1.21570 1.00939 0.95596 0.97690 1.21491 1.00981 0.95390 0.97615 1.21936 1.00359 1.00452 0.94163 1.20943 0.99385 0.90853 0.84500 0.89347 1.46226 1.29655 1.32878 1.30092 1.21485 0.84163 0.78979 0.85445 1.90641 1.24583 1.61902 1.64647 1.21662 1.01285 1.00071 0.93280 1.19353 0.95053 0.92389 0.96774 1.21129 1.11477 1.13541 1.10080 0.90979 1.24970 0.97330 0.96383 0.94541 1.69914 1.40337 1.23254 1.20820 0.86799 0.83968 0.77933 0.80879 1.20254 1.21460 1.18535 0.92924 0.92215 0.92507 0.90748 0.92828 0.92825 0.92678 0.91538 0.91329 0.92087 0.92114 0.91993 0.91853 0.91349 0.92031 0.77001 0.89779 0.89747 0.95894 0.96338 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.45 37.16 0.31 -1.21 16 2 C -0.09 -0.85 2.61 -90.62 -0.24 -1.09 16 3 C -0.15 -1.12 8.81 37.16 0.33 -0.80 16 4 C -0.09 -0.78 1.55 -90.62 -0.14 -0.92 16 5 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 6 C -0.11 -0.90 4.46 -26.73 -0.12 -1.02 16 7 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 8 C -0.12 -1.10 5.92 -26.74 -0.16 -1.26 16 9 C -0.13 -1.50 5.51 -26.74 -0.15 -1.65 16 10 C 0.15 1.76 1.68 -67.94 -0.11 1.65 16 11 H 0.09 1.27 5.96 -51.93 -0.31 0.96 16 12 N -0.74 -9.76 4.26 -53.81 -0.23 -9.99 16 13 C 0.51 9.29 7.81 -10.99 -0.09 9.20 16 14 O -0.54 -11.99 15.62 5.56 0.09 -11.90 16 15 C -0.12 -2.41 5.64 -27.89 -0.16 -2.57 16 16 C 0.00 0.06 3.33 -27.89 -0.09 -0.04 16 17 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 21 Si 0.88 22.84 27.47 -169.99 -4.67 18.17 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 24 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.73 6.58 -51.93 -0.34 0.38 16 27 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 28 H 0.07 0.77 7.33 -51.93 -0.38 0.39 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.39 6.87 -51.93 -0.36 0.03 16 32 H 0.07 0.46 6.71 -51.93 -0.35 0.12 16 33 H 0.07 0.58 6.34 -51.93 -0.33 0.25 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 43 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 44 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -33.01 342.18 -8.24 -41.25 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.16 Total: -0.85 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.20 Total: -14.34 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.54 Total: -37.48 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.67 Total: 18.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.01 -8.24 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361856495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.324 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds