Wall clock time and date at job start Mon Mar 30 2020 09:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47157 * 2 1 4 4 C 1.53004 * 109.47348 * 120.00501 * 2 1 3 5 5 H 1.09000 * 109.47340 * 185.46808 * 4 2 1 6 6 C 1.52998 * 109.46585 * 305.46568 * 4 2 1 7 7 C 1.53005 * 109.46943 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47119 * 300.00464 * 7 6 4 9 9 C 1.52993 * 109.47285 * 59.99815 * 8 7 6 10 10 C 1.52994 * 109.47198 * 299.99824 * 9 8 7 11 11 H 1.09000 * 109.47084 * 300.00049 * 10 9 8 12 12 N 1.46500 * 109.47348 * 180.02562 * 10 9 8 13 13 C 1.34780 * 120.00223 * 86.59539 * 12 10 9 14 14 O 1.21281 * 119.99576 * 0.02562 * 13 12 10 15 15 C 1.50694 * 120.00263 * 179.97438 * 13 12 10 16 16 C 1.52994 * 109.47280 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47220 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00036 * 359.97438 * 17 16 15 19 19 C 1.37886 * 120.00020 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99814 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99857 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.46707 * 90.00167 * 21 19 17 23 23 H 1.48497 * 109.47180 * 209.99827 * 21 19 17 24 24 H 1.48497 * 109.47169 * 330.00470 * 21 19 17 25 25 H 1.08999 * 109.47062 * 59.99764 * 1 2 3 26 26 H 1.08997 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46782 * 299.99838 * 1 2 3 28 28 H 1.09007 * 109.46799 * 240.00461 * 2 1 3 29 29 H 1.09004 * 109.47307 * 174.21952 * 3 2 1 30 30 H 1.09001 * 109.47468 * 294.22229 * 3 2 1 31 31 H 1.09004 * 109.46961 * 54.22375 * 3 2 1 32 32 H 1.09000 * 109.47970 * 300.00180 * 6 4 2 33 33 H 1.09003 * 109.47519 * 60.00361 * 6 4 2 34 34 H 1.09000 * 109.46572 * 60.00821 * 7 6 4 35 35 H 1.09001 * 109.47103 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46571 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47174 * 299.99128 * 8 7 6 38 38 H 1.09001 * 109.47159 * 179.97438 * 9 8 7 39 39 H 1.09000 * 109.47143 * 59.99836 * 9 8 7 40 40 H 0.97005 * 120.00105 * 266.60090 * 12 10 9 41 41 H 1.09002 * 109.47787 * 300.00622 * 15 13 12 42 42 H 1.09002 * 109.47017 * 60.00620 * 15 13 12 43 43 H 1.09001 * 109.47445 * 300.00210 * 16 15 13 44 44 H 1.08997 * 109.47334 * 60.00723 * 16 15 13 45 45 H 0.97008 * 119.99802 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 3.1257 -0.6373 1.2995 6 6 1.4210 -0.0839 2.4946 7 6 1.9305 -0.8056 3.7438 8 6 1.5354 -2.2821 3.6766 9 6 2.1545 -2.9195 2.4312 10 6 1.6449 -2.1979 1.1820 11 1 0.5593 -2.2816 1.1315 12 7 2.2373 -2.8086 -0.0106 13 6 1.6490 -3.8775 -0.5833 14 8 0.6290 -4.3335 -0.1115 15 6 2.2580 -4.5054 -1.8104 16 6 1.4002 -5.6914 -2.2556 17 6 2.0095 -6.3197 -3.4823 18 1 2.9176 -5.9134 -3.9027 19 6 1.4072 -7.4127 -4.0687 20 7 1.9387 -7.9606 -5.1396 21 14 -0.1638 -8.1150 -3.3420 22 1 -1.3371 -7.4481 -3.9617 23 1 -0.2246 -9.5741 -3.6111 24 1 -0.1788 -7.8809 -1.8757 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1251 1.4442 0.1035 30 1 1.7636 1.9256 -0.9372 31 1 1.5947 1.9853 0.8338 32 1 1.7020 0.9682 2.5424 33 1 0.3353 -0.1679 2.4444 34 1 3.0161 -0.7218 3.7944 35 1 1.4898 -0.3511 4.6312 36 1 1.8988 -2.7963 4.5664 37 1 0.4497 -2.3658 3.6262 38 1 1.8733 -3.9716 2.3835 39 1 3.2401 -2.8358 2.4817 40 1 3.0530 -2.4438 -0.3881 41 1 2.3021 -3.7682 -2.6121 42 1 3.2654 -4.8517 -1.5794 43 1 1.3557 -6.4289 -1.4541 44 1 0.3929 -5.3449 -2.4867 45 1 1.5151 -8.7297 -5.5519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361856495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:14 Heat of formation + Delta-G solvation = -104.681223 kcal Electronic energy + Delta-G solvation = -21292.629239 eV Core-core repulsion = 18307.219336 eV Total energy + Delta-G solvation = -2985.409904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34387 -39.61844 -35.88977 -35.56411 -35.11692 -33.32269 -30.76319 -29.98258 -28.06617 -27.77723 -24.47700 -23.93299 -22.47835 -21.39575 -21.05970 -19.90343 -19.14383 -17.56286 -17.32492 -16.51531 -16.24490 -16.07044 -15.56783 -15.27722 -15.04929 -14.88472 -14.58544 -14.28749 -14.21313 -13.76247 -13.56636 -13.40804 -13.25062 -12.92863 -12.83191 -12.39597 -12.27549 -12.11094 -12.01161 -11.97810 -11.81468 -11.77634 -11.62703 -11.41080 -11.22640 -11.13876 -10.97452 -10.79269 -10.60157 -9.91785 -8.32830 -6.35515 1.31483 1.33321 1.48742 1.73087 2.30336 2.33756 3.02879 3.60832 3.73685 3.87508 4.03272 4.12498 4.20679 4.25966 4.38961 4.40504 4.44015 4.49082 4.50817 4.58951 4.63315 4.76846 4.84274 4.88705 4.98000 4.98936 5.06063 5.11354 5.15680 5.21418 5.23083 5.26904 5.33012 5.35857 5.41194 5.43730 5.44932 5.55145 5.58503 5.60639 5.69541 6.22595 6.65039 6.70748 7.29909 7.37268 8.82931 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.004189 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.595415 B = 6682.893431 C = 7137.226256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.078 4.078 5 H 0.090 0.910 6 C -0.112 4.112 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.128 4.128 10 C 0.147 3.853 11 H 0.061 0.939 12 N -0.713 5.713 13 C 0.515 3.485 14 O -0.587 6.587 15 C -0.118 4.118 16 C 0.006 3.994 17 C -0.529 4.529 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.943 5.943 21 Si 0.937 3.063 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.264 1.264 25 H 0.051 0.949 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.413 0.587 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.008 0.992 44 H 0.007 0.993 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 21.583 18.111 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.097 4.097 5 H 0.108 0.892 6 C -0.150 4.150 7 C -0.153 4.153 8 C -0.153 4.153 9 C -0.166 4.166 10 C 0.042 3.958 11 H 0.080 0.920 12 N -0.365 5.365 13 C 0.303 3.697 14 O -0.467 6.467 15 C -0.157 4.157 16 C -0.031 4.031 17 C -0.567 4.567 18 H 0.069 0.931 19 C -0.183 4.183 20 N -0.583 5.583 21 Si 0.762 3.238 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.188 1.188 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.249 0.751 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.259 21.134 18.318 27.996 hybrid contribution -0.450 -0.927 -0.495 1.143 sum 0.809 20.208 17.823 26.957 Atomic orbital electron populations 1.21931 0.96144 1.00539 1.02156 1.21121 0.95406 0.97120 0.97493 1.21829 1.01408 0.94606 1.02039 1.21419 1.01406 0.91091 0.95740 0.89159 1.21661 1.00444 1.00165 0.92705 1.21549 1.01709 0.93856 0.98140 1.21489 1.00145 0.96961 0.96732 1.21897 1.01285 0.98514 0.94943 1.21080 0.97870 0.93032 0.83780 0.92041 1.45992 1.29546 1.31014 1.29936 1.21132 0.83627 0.79861 0.85074 1.90628 1.26613 1.63632 1.65859 1.21494 1.00937 0.98627 0.94673 1.19198 0.95231 0.94005 0.94714 1.21435 1.10749 1.13512 1.11039 0.93143 1.25782 1.00522 0.96995 0.94957 1.70020 1.42028 1.24104 1.22194 0.85846 0.80342 0.77824 0.79801 1.19355 1.20177 1.18812 0.92962 0.95092 0.91135 0.92025 0.91766 0.92971 0.91635 0.89505 0.92112 0.90956 0.90689 0.91162 0.93013 0.94761 0.90599 0.75057 0.88144 0.88143 0.97387 0.97502 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.45 71.98 0.61 -2.28 16 2 C -0.09 -1.52 2.61 -10.79 -0.03 -1.55 16 3 C -0.14 -1.72 8.81 71.98 0.63 -1.09 16 4 C -0.08 -1.20 1.55 -10.79 -0.02 -1.22 16 5 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 6 C -0.11 -1.44 4.46 30.60 0.14 -1.30 16 7 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 8 C -0.12 -2.01 5.92 30.59 0.18 -1.82 16 9 C -0.13 -2.82 5.51 30.59 0.17 -2.66 16 10 C 0.15 3.37 1.68 44.99 0.08 3.45 16 11 H 0.06 1.80 5.96 -2.39 -0.01 1.79 16 12 N -0.71 -18.25 4.26 -442.55 -1.88 -20.14 16 13 C 0.51 18.72 7.81 87.65 0.68 19.40 16 14 O -0.59 -26.65 15.62 -3.03 -0.05 -26.70 16 15 C -0.12 -4.56 5.64 29.84 0.17 -4.39 16 16 C 0.01 0.33 3.33 29.85 0.10 0.43 16 17 C -0.53 -31.08 9.66 25.60 0.25 -30.83 16 18 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 19 C 0.02 0.92 5.47 84.66 0.46 1.38 16 20 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 21 Si 0.94 47.60 27.47 68.60 1.88 49.48 16 22 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.26 -13.41 6.54 99.48 0.65 -12.76 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.03 0.76 6.58 -2.39 -0.02 0.75 16 27 H 0.07 1.13 6.34 -2.39 -0.02 1.12 16 28 H 0.06 1.17 7.33 -2.38 -0.02 1.15 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.67 6.87 -2.39 -0.02 0.66 16 32 H 0.09 0.83 6.71 -2.39 -0.02 0.82 16 33 H 0.06 0.90 6.34 -2.39 -0.02 0.88 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.41 7.94 8.47 -92.70 -0.79 7.15 16 41 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 42 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 44 H 0.01 0.35 7.53 -2.39 -0.02 0.33 16 45 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 Total: -1.00 -72.71 342.18 3.96 -68.75 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.11 Total: 11.67 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 3.60 Total: -23.72 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -1.59 Total: -79.47 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.88 Total: 49.48 kcal Total: -72.71 3.96 -68.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361856495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.936 kcal (2) G-P(sol) polarization free energy of solvation -72.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds