Wall clock time and date at job start Mon Mar 30 2020 09:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47051 * 2 1 4 4 C 1.53000 * 109.47405 * 119.99836 * 2 1 3 5 5 H 1.09005 * 109.46966 * 54.66901 * 4 2 1 6 6 C 1.53005 * 109.47028 * 294.67396 * 4 2 1 7 7 C 1.53000 * 109.47028 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47465 * 59.99559 * 7 6 4 9 9 C 1.52997 * 109.47138 * 300.00091 * 8 7 6 10 10 C 1.52998 * 109.47314 * 174.67318 * 4 2 1 11 11 H 1.08993 * 109.47252 * 60.00154 * 10 4 2 12 12 N 1.46499 * 109.47171 * 299.99854 * 10 4 2 13 13 C 1.34773 * 120.00294 * 153.50041 * 12 10 4 14 14 O 1.21277 * 119.99683 * 0.02562 * 13 12 10 15 15 C 1.50702 * 120.00157 * 179.97438 * 13 12 10 16 16 C 1.52997 * 109.47115 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47120 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00269 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99981 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00157 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00087 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46887 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46925 * 119.99304 * 21 19 17 24 24 H 1.48497 * 109.47071 * 239.99346 * 21 19 17 25 25 H 1.08996 * 109.47122 * 305.75015 * 1 2 3 26 26 H 1.08998 * 109.47024 * 65.75772 * 1 2 3 27 27 H 1.09005 * 109.46845 * 185.74929 * 1 2 3 28 28 H 1.09001 * 109.47376 * 240.00135 * 2 1 3 29 29 H 1.08999 * 109.47156 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47032 * 300.00030 * 3 2 1 31 31 H 1.09001 * 109.46920 * 59.99857 * 3 2 1 32 32 H 1.09005 * 109.46842 * 299.99581 * 6 4 2 33 33 H 1.08997 * 109.47085 * 59.99925 * 6 4 2 34 34 H 1.08998 * 109.47086 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46966 * 299.99505 * 7 6 4 36 36 H 1.09002 * 109.46695 * 60.00348 * 8 7 6 37 37 H 1.09005 * 109.47294 * 180.02562 * 8 7 6 38 38 H 1.08993 * 109.47397 * 299.99881 * 9 8 7 39 39 H 1.09005 * 109.47120 * 179.97438 * 9 8 7 40 40 H 0.97002 * 119.99866 * 333.50438 * 12 10 4 41 41 H 1.09005 * 109.46732 * 60.00030 * 15 13 12 42 42 H 1.08995 * 109.47227 * 300.00710 * 15 13 12 43 43 H 1.09004 * 109.47425 * 300.00476 * 16 15 13 44 44 H 1.08995 * 109.47016 * 60.00101 * 16 15 13 45 45 H 0.96994 * 120.00208 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6008 -1.7176 1.2983 6 6 1.6423 0.0733 2.4949 7 6 2.1518 -0.6483 3.7442 8 6 3.6759 -0.7659 3.6793 9 6 4.0736 -1.5604 2.4337 10 6 3.5641 -0.8382 1.1841 11 1 4.0033 0.1581 1.1351 12 7 3.9450 -1.5989 -0.0086 13 6 5.1500 -1.4000 -0.5786 14 8 5.9192 -0.5915 -0.1038 15 6 5.5419 -2.1830 -1.8051 16 6 6.9474 -1.7698 -2.2463 17 6 7.3391 -2.5523 -3.4732 18 1 6.6543 -3.2726 -3.8958 19 6 8.5722 -2.3495 -4.0557 20 7 9.4064 -1.4727 -3.5409 21 14 9.0580 -3.3199 -5.5761 22 1 7.9514 -4.2353 -5.9535 23 1 9.3295 -2.3828 -6.6957 24 1 10.2796 -4.1134 -5.2875 25 1 -0.3633 0.6004 0.8340 26 1 -0.3633 0.4219 -0.9370 27 1 -0.3633 -1.0226 0.1030 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 2.0815 1.0697 2.4458 33 1 0.5565 0.1566 2.5413 34 1 1.8681 -0.0825 4.6316 35 1 1.7123 -1.6446 3.7930 36 1 4.1154 0.2304 3.6306 37 1 4.0388 -1.2804 4.5692 38 1 3.6341 -2.5566 2.4825 39 1 5.1594 -1.6438 2.3873 40 1 3.3298 -2.2458 -0.3882 41 1 4.8337 -1.9786 -2.6082 42 1 5.5322 -3.2482 -1.5746 43 1 6.9575 -0.7044 -2.4767 44 1 7.6552 -1.9745 -1.4431 45 1 10.2738 -1.3297 -3.9509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361856496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:19:18 Heat of formation + Delta-G solvation = -107.541116 kcal Electronic energy + Delta-G solvation = -21222.005899 eV Core-core repulsion = 18236.471981 eV Total energy + Delta-G solvation = -2985.533918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32981 -39.59928 -35.88831 -35.57803 -35.10965 -33.02110 -30.71100 -29.90919 -28.06525 -27.54913 -24.48068 -24.20274 -22.63354 -21.39976 -21.05351 -19.86400 -18.77351 -17.46834 -17.29440 -16.47127 -16.43783 -16.06725 -15.56111 -15.25062 -15.04376 -14.75322 -14.34428 -14.17278 -14.14115 -13.72397 -13.56127 -13.26453 -13.19968 -12.87367 -12.82297 -12.45815 -12.37848 -12.27445 -12.02188 -11.92682 -11.81397 -11.65060 -11.61830 -11.29003 -11.22441 -11.13093 -10.97489 -10.58540 -10.57016 -9.90821 -8.18626 -6.32936 1.41486 1.43165 1.56510 1.76261 2.29588 2.45523 3.14339 3.61074 3.73757 3.87827 4.07408 4.12531 4.21266 4.25892 4.40510 4.44310 4.46654 4.53999 4.54928 4.59249 4.63769 4.76889 4.84322 4.88675 4.98661 5.03294 5.08213 5.11593 5.16308 5.21593 5.23382 5.27031 5.36094 5.41149 5.44817 5.48297 5.56138 5.59075 5.62473 5.69814 5.85085 6.17222 6.67858 6.85903 7.37205 7.41980 8.94377 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.003862 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.970832 B = 7248.641061 C = 7751.652368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.077 4.077 5 H 0.093 0.907 6 C -0.112 4.112 7 C -0.114 4.114 8 C -0.116 4.116 9 C -0.128 4.128 10 C 0.147 3.853 11 H 0.057 0.943 12 N -0.712 5.712 13 C 0.511 3.489 14 O -0.591 6.591 15 C -0.120 4.120 16 C 0.043 3.957 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.975 3.025 22 H -0.252 1.252 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.026 0.974 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.030 0.970 40 H 0.413 0.587 41 H 0.102 0.898 42 H 0.102 0.898 43 H -0.020 1.020 44 H -0.020 1.020 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.897 -0.371 12.360 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.096 4.096 5 H 0.111 0.889 6 C -0.150 4.150 7 C -0.152 4.152 8 C -0.154 4.154 9 C -0.166 4.166 10 C 0.042 3.958 11 H 0.075 0.925 12 N -0.365 5.365 13 C 0.300 3.700 14 O -0.471 6.471 15 C -0.160 4.160 16 C 0.005 3.995 17 C -0.580 4.580 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.798 3.202 22 H -0.176 1.176 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.250 0.750 41 H 0.120 0.880 42 H 0.120 0.880 43 H -0.001 1.001 44 H -0.001 1.001 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.211 0.275 12.676 25.576 hybrid contribution 1.062 -0.243 -0.928 1.430 sum -21.150 0.032 11.749 24.194 Atomic orbital electron populations 1.21822 0.93355 1.02534 1.02072 1.21117 0.96894 0.95605 0.97481 1.21938 0.99598 0.97112 1.02185 1.21426 0.91494 1.00901 0.95784 0.88926 1.21666 1.01947 0.98670 0.92715 1.21545 0.93862 1.01595 0.98149 1.21497 0.97552 0.99629 0.96704 1.21909 0.99442 1.00262 0.95018 1.21079 0.96034 0.94817 0.83847 0.92518 1.45978 1.16910 1.43620 1.29946 1.21274 0.81340 0.82124 0.85279 1.90644 1.52741 1.37938 1.65728 1.21632 0.99282 1.00538 0.94515 1.18673 0.91291 0.94753 0.94741 1.21748 1.01557 1.22781 1.11938 0.90609 1.26153 0.96595 0.96424 1.01292 1.70190 1.08977 1.36223 1.42465 0.85260 0.78522 0.78349 0.78026 1.17555 1.20580 1.20588 0.91626 0.92916 0.91609 0.92029 0.95441 0.92887 0.91100 0.92286 0.89301 0.90620 0.90767 0.93234 0.91101 0.90375 0.95154 0.75013 0.87981 0.87958 1.00132 1.00127 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.81 71.98 0.63 -1.14 16 2 C -0.09 -1.62 2.61 -10.79 -0.03 -1.65 16 3 C -0.15 -3.16 8.46 71.98 0.61 -2.55 16 4 C -0.08 -1.29 1.54 -10.79 -0.02 -1.31 16 5 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 6 C -0.11 -1.58 4.47 30.60 0.14 -1.44 16 7 C -0.11 -1.54 5.92 30.59 0.18 -1.36 16 8 C -0.12 -2.22 5.92 30.59 0.18 -2.04 16 9 C -0.13 -3.09 5.51 30.61 0.17 -2.93 16 10 C 0.15 3.70 1.68 45.01 0.08 3.77 16 11 H 0.06 1.84 5.96 -2.39 -0.01 1.82 16 12 N -0.71 -19.83 4.26 -442.46 -1.89 -21.71 16 13 C 0.51 20.48 7.81 87.66 0.68 21.16 16 14 O -0.59 -30.10 15.62 -3.02 -0.05 -30.15 16 15 C -0.12 -4.97 5.64 29.85 0.17 -4.80 16 16 C 0.04 2.47 4.26 29.85 0.13 2.60 16 17 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 18 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.03 16 20 N -0.94 -60.55 13.29 21.45 0.28 -60.27 16 21 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 22 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 H 0.06 0.71 6.86 -2.39 -0.02 0.69 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 1.23 7.33 -2.39 -0.02 1.22 16 29 H 0.03 0.74 6.57 -2.39 -0.02 0.73 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.07 1.25 6.34 -2.39 -0.02 1.23 16 32 H 0.06 0.97 6.34 -2.38 -0.02 0.95 16 33 H 0.09 0.92 6.71 -2.39 -0.02 0.90 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.41 8.50 8.46 -92.71 -0.78 7.72 16 41 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 42 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 43 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 44 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 45 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -76.93 345.77 4.16 -72.77 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.16 Total: 15.36 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.62 Total: -22.92 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -1.60 Total: -81.98 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -76.93 4.16 -72.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361856496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.770 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds