Wall clock time and date at job start Mon Mar 30 2020 07:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47250 * 2 1 4 4 C 1.52998 * 109.46806 * 299.99690 * 3 2 1 5 5 C 1.53001 * 109.47187 * 59.99714 * 3 2 1 6 6 C 1.52995 * 109.47250 * 180.02562 * 3 2 1 7 7 H 1.08999 * 109.87539 * 69.38180 * 6 3 2 8 8 C 1.54330 * 109.88203 * 308.37043 * 6 3 2 9 9 C 1.55157 * 102.94030 * 218.39195 * 8 6 3 10 10 C 1.54907 * 101.58384 * 35.49980 * 9 8 6 11 11 N 1.47021 * 109.88134 * 190.56449 * 6 3 2 12 12 C 1.34777 * 125.64722 * 298.30751 * 11 6 3 13 13 O 1.21279 * 119.99838 * 2.19208 * 12 11 6 14 14 C 1.50705 * 119.99952 * 182.19650 * 12 11 6 15 15 C 1.52996 * 109.46781 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47013 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99604 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00491 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99546 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00433 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47025 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47281 * 120.00092 * 20 18 16 23 23 H 1.48501 * 109.47032 * 240.00410 * 20 18 16 24 24 H 1.09004 * 109.47146 * 60.00243 * 1 2 3 25 25 H 1.08998 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47171 * 300.00549 * 1 2 3 27 27 H 1.08997 * 109.47275 * 239.99721 * 2 1 3 28 28 H 1.09004 * 109.47146 * 119.99757 * 2 1 3 29 29 H 1.09005 * 109.47214 * 35.05772 * 4 3 2 30 30 H 1.09000 * 109.46967 * 155.05157 * 4 3 2 31 31 H 1.08998 * 109.47658 * 275.05170 * 4 3 2 32 32 H 1.08999 * 109.47223 * 59.99912 * 5 3 2 33 33 H 1.08998 * 109.47143 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.47091 * 300.00328 * 5 3 2 35 35 H 1.09002 * 110.71446 * 336.75392 * 8 6 3 36 36 H 1.08995 * 110.72082 * 100.02699 * 8 6 3 37 37 H 1.09003 * 110.99766 * 153.57734 * 9 8 6 38 38 H 1.09003 * 111.00047 * 277.38466 * 9 8 6 39 39 H 1.08999 * 110.36418 * 81.82893 * 10 9 8 40 40 H 1.09001 * 110.36368 * 204.04270 * 10 9 8 41 41 H 1.09000 * 109.46690 * 299.99868 * 14 12 11 42 42 H 1.08996 * 109.47204 * 59.99894 * 14 12 11 43 43 H 1.09000 * 109.47182 * 299.99299 * 15 14 12 44 44 H 1.08996 * 109.47556 * 59.99842 * 15 14 12 45 45 H 0.96998 * 119.99857 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1638 1.2492 6 6 3.5700 1.4425 -0.0006 7 1 3.9401 1.0817 -0.9603 8 6 4.0953 0.5415 1.1368 9 6 5.3282 1.3251 1.6595 10 6 4.8551 2.7915 1.5006 11 7 4.0700 2.8016 0.2528 12 6 3.8484 3.8783 -0.5270 13 8 3.1524 3.7784 -1.5151 14 6 4.4656 5.2063 -0.1712 15 6 4.0590 6.2525 -1.2108 16 6 4.6756 7.5807 -0.8547 17 1 5.2952 7.6697 0.0254 18 6 4.4489 8.6822 -1.6524 19 7 3.6948 8.5736 -2.7244 20 14 5.2138 10.3283 -1.2114 21 1 6.0140 10.1852 0.0314 22 1 6.0959 10.7768 -2.3186 23 1 4.1401 11.3314 -0.9966 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5304 1.8043 -1.4937 30 1 1.4943 3.2366 -1.0603 31 1 2.2021 1.9641 -2.0839 32 1 1.8932 1.6500 2.1392 33 1 1.8929 3.1916 1.2490 34 1 0.4399 2.1638 1.2492 35 1 3.3458 0.4340 1.9210 36 1 4.3932 -0.4332 0.7504 37 1 5.5262 1.0895 2.7052 38 1 6.2060 1.1281 1.0439 39 1 4.2295 3.0818 2.3447 40 1 5.7122 3.4597 1.4170 41 1 4.1156 5.5175 0.8131 42 1 5.5513 5.1103 -0.1572 43 1 4.4087 5.9415 -2.1953 44 1 2.9733 6.3484 -1.2245 45 1 3.5349 9.3486 -3.2854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361975294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:14 Heat of formation + Delta-G solvation = -47.107543 kcal Electronic energy + Delta-G solvation = -21882.914968 eV Core-core repulsion = 18900.001647 eV Total energy + Delta-G solvation = -2982.913321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.52115 -37.62193 -36.08400 -33.43065 -31.60877 -30.90796 -30.05505 -28.20417 -27.06611 -25.71972 -24.18391 -23.06771 -21.44906 -20.93897 -18.90519 -17.70746 -17.01379 -16.55000 -15.90944 -14.96973 -14.67140 -14.50287 -14.37768 -14.23774 -13.66201 -13.32369 -13.06629 -12.85762 -12.40197 -12.28748 -12.13513 -11.97740 -11.83297 -11.57330 -11.28388 -11.18401 -11.05370 -10.96518 -10.94549 -10.87326 -10.56725 -10.38034 -10.18142 -10.06609 -9.85689 -9.52803 -9.06881 -8.71709 -8.30802 -8.12157 -5.94182 -3.98134 3.32076 3.33668 3.38221 3.41548 3.44872 4.47467 4.52520 4.55361 4.74735 4.95000 4.97793 5.02077 5.30390 5.34295 5.40931 5.43185 5.47267 5.56005 5.65439 5.67088 5.71045 5.78048 5.80720 5.94481 5.95780 5.97632 6.06151 6.12112 6.16715 6.26154 6.29098 6.34603 6.39503 6.51736 6.65383 6.76472 6.97130 7.09760 7.77328 7.90091 7.99931 8.10058 8.42196 8.89102 9.10913 9.65299 11.16813 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.004598 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.081421 B = 6088.544272 C = 6744.927991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.071 4.071 4 C -0.136 4.136 5 C -0.135 4.135 6 C 0.147 3.853 7 H 0.068 0.932 8 C -0.130 4.130 9 C -0.134 4.134 10 C 0.102 3.898 11 N -0.621 5.621 12 C 0.517 3.483 13 O -0.516 6.516 14 C -0.124 4.124 15 C 0.038 3.962 16 C -0.525 4.525 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 -18.690 10.447 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.072 4.072 4 C -0.192 4.192 5 C -0.193 4.193 6 C 0.043 3.957 7 H 0.086 0.914 8 C -0.168 4.168 9 C -0.172 4.172 10 C -0.021 4.021 11 N -0.357 5.357 12 C 0.308 3.692 13 O -0.392 6.392 14 C -0.164 4.164 15 C 0.001 3.999 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.229 -18.537 9.689 20.952 hybrid contribution 0.466 0.921 0.251 1.062 sum -0.764 -17.616 9.939 20.241 Atomic orbital electron populations 1.21919 0.96045 1.00956 1.02386 1.21571 0.95946 0.95905 1.01469 1.20912 0.94059 0.95133 0.97107 1.22375 0.98823 1.01963 0.96054 1.21884 1.00481 1.00584 0.96317 1.21605 0.93177 0.82872 0.98048 0.91372 1.22773 0.97546 0.98242 0.98191 1.22780 0.98050 0.94720 1.01663 1.22227 0.95476 0.97175 0.87238 1.48699 1.53604 1.08413 1.25031 1.21167 0.80312 0.84930 0.82780 1.90713 1.36636 1.84791 1.27031 1.21838 1.00255 0.91485 1.02856 1.18892 0.97392 0.90699 0.92945 1.21264 1.30789 0.94229 1.10072 0.92662 1.25017 0.95297 0.98989 0.95045 1.70009 1.37944 1.30075 1.14825 0.86557 0.79074 0.84125 0.78338 1.19764 1.21035 1.21028 0.92062 0.93323 0.92569 0.92253 0.92123 0.94609 0.89999 0.92363 0.93346 0.92489 0.92817 0.90282 0.90618 0.90255 0.90784 0.91788 0.90475 0.90748 0.90610 0.95882 0.95900 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.29 37.16 0.35 -1.20 16 2 C -0.11 -1.15 4.61 -26.73 -0.12 -1.27 16 3 C -0.07 -0.91 0.34 -154.51 -0.05 -0.96 16 4 C -0.14 -2.20 6.91 37.16 0.26 -1.94 16 5 C -0.14 -1.71 7.55 37.16 0.28 -1.43 16 6 C 0.15 1.89 2.39 -66.95 -0.16 1.73 16 7 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 8 C -0.13 -1.19 5.14 -24.89 -0.13 -1.32 16 9 C -0.13 -1.18 7.08 -24.58 -0.17 -1.35 16 10 C 0.10 1.17 6.71 -2.53 -0.02 1.15 16 11 N -0.62 -9.24 2.03 -163.02 -0.33 -9.57 16 12 C 0.52 10.06 7.02 -10.98 -0.08 9.99 16 13 O -0.52 -11.69 10.88 5.56 0.06 -11.62 16 14 C -0.12 -2.59 4.61 -27.88 -0.13 -2.72 16 15 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 16 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.61 13.29 55.43 0.74 -26.88 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.06 0.66 6.01 -51.93 -0.31 0.35 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 29 H 0.04 0.52 5.58 -51.93 -0.29 0.23 16 30 H 0.08 1.61 5.51 -51.96 -0.29 1.33 16 31 H 0.06 1.04 6.86 -51.93 -0.36 0.68 16 32 H 0.05 0.52 6.58 -51.93 -0.34 0.18 16 33 H 0.06 0.85 6.97 -51.93 -0.36 0.49 16 34 H 0.05 0.65 6.43 -51.92 -0.33 0.32 16 35 H 0.08 0.68 5.52 -51.93 -0.29 0.39 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.87 7.47 -51.93 -0.39 0.49 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.08 1.48 7.89 -51.93 -0.41 1.07 16 43 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -32.29 332.49 -7.84 -40.14 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.79 Total: -1.72 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -0.51 Total: -12.17 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.41 Total: -36.45 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.06 Total: -11.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.29 -7.84 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361975294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.969 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds