Wall clock time and date at job start Mon Mar 30 2020 07:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47250 * 2 1 4 4 C 1.52998 * 109.46806 * 299.99690 * 3 2 1 5 5 C 1.53001 * 109.47187 * 59.99714 * 3 2 1 6 6 C 1.52995 * 109.47250 * 180.02562 * 3 2 1 7 7 H 1.08999 * 109.87539 * 69.38180 * 6 3 2 8 8 C 1.54330 * 109.88203 * 308.37043 * 6 3 2 9 9 C 1.55157 * 102.94030 * 218.39195 * 8 6 3 10 10 C 1.54907 * 101.58384 * 35.49980 * 9 8 6 11 11 N 1.47021 * 109.88134 * 190.56449 * 6 3 2 12 12 C 1.34777 * 125.64722 * 298.30751 * 11 6 3 13 13 O 1.21279 * 119.99838 * 2.19208 * 12 11 6 14 14 C 1.50705 * 119.99952 * 182.19650 * 12 11 6 15 15 C 1.52996 * 109.46781 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47013 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99604 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00491 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99546 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00433 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47025 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47281 * 120.00092 * 20 18 16 23 23 H 1.48501 * 109.47032 * 240.00410 * 20 18 16 24 24 H 1.09004 * 109.47146 * 60.00243 * 1 2 3 25 25 H 1.08998 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47171 * 300.00549 * 1 2 3 27 27 H 1.08997 * 109.47275 * 239.99721 * 2 1 3 28 28 H 1.09004 * 109.47146 * 119.99757 * 2 1 3 29 29 H 1.09005 * 109.47214 * 35.05772 * 4 3 2 30 30 H 1.09000 * 109.46967 * 155.05157 * 4 3 2 31 31 H 1.08998 * 109.47658 * 275.05170 * 4 3 2 32 32 H 1.08999 * 109.47223 * 59.99912 * 5 3 2 33 33 H 1.08998 * 109.47143 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.47091 * 300.00328 * 5 3 2 35 35 H 1.09002 * 110.71446 * 336.75392 * 8 6 3 36 36 H 1.08995 * 110.72082 * 100.02699 * 8 6 3 37 37 H 1.09003 * 110.99766 * 153.57734 * 9 8 6 38 38 H 1.09003 * 111.00047 * 277.38466 * 9 8 6 39 39 H 1.08999 * 110.36418 * 81.82893 * 10 9 8 40 40 H 1.09001 * 110.36368 * 204.04270 * 10 9 8 41 41 H 1.09000 * 109.46690 * 299.99868 * 14 12 11 42 42 H 1.08996 * 109.47204 * 59.99894 * 14 12 11 43 43 H 1.09000 * 109.47182 * 299.99299 * 15 14 12 44 44 H 1.08996 * 109.47556 * 59.99842 * 15 14 12 45 45 H 0.96998 * 119.99857 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 1.5300 2.1638 1.2492 6 6 3.5700 1.4425 -0.0006 7 1 3.9401 1.0817 -0.9603 8 6 4.0953 0.5415 1.1368 9 6 5.3282 1.3251 1.6595 10 6 4.8551 2.7915 1.5006 11 7 4.0700 2.8016 0.2528 12 6 3.8484 3.8783 -0.5270 13 8 3.1524 3.7784 -1.5151 14 6 4.4656 5.2063 -0.1712 15 6 4.0590 6.2525 -1.2108 16 6 4.6756 7.5807 -0.8547 17 1 5.2952 7.6697 0.0254 18 6 4.4489 8.6822 -1.6524 19 7 3.6948 8.5736 -2.7244 20 14 5.2138 10.3283 -1.2114 21 1 6.0140 10.1852 0.0314 22 1 6.0959 10.7768 -2.3186 23 1 4.1401 11.3314 -0.9966 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5304 1.8043 -1.4937 30 1 1.4943 3.2366 -1.0603 31 1 2.2021 1.9641 -2.0839 32 1 1.8932 1.6500 2.1392 33 1 1.8929 3.1916 1.2490 34 1 0.4399 2.1638 1.2492 35 1 3.3458 0.4340 1.9210 36 1 4.3932 -0.4332 0.7504 37 1 5.5262 1.0895 2.7052 38 1 6.2060 1.1281 1.0439 39 1 4.2295 3.0818 2.3447 40 1 5.7122 3.4597 1.4170 41 1 4.1156 5.5175 0.8131 42 1 5.5513 5.1103 -0.1572 43 1 4.4087 5.9415 -2.1953 44 1 2.9733 6.3484 -1.2245 45 1 3.5349 9.3486 -3.2854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361975294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:13 Heat of formation + Delta-G solvation = -65.789795 kcal Electronic energy + Delta-G solvation = -21883.725092 eV Core-core repulsion = 18900.001647 eV Total energy + Delta-G solvation = -2983.723445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70973 -39.01739 -37.11009 -35.57185 -33.20889 -32.27908 -31.16428 -29.19746 -28.29895 -27.65593 -25.14317 -24.54654 -22.80014 -22.10267 -20.19754 -18.92764 -18.72094 -17.75213 -17.60444 -16.50466 -16.33008 -15.80781 -15.58016 -15.32744 -14.77374 -14.50144 -14.31062 -14.24015 -14.07292 -13.54890 -13.40984 -13.13505 -12.97405 -12.89275 -12.78115 -12.56327 -12.43244 -12.36204 -12.10721 -11.95510 -11.89833 -11.70215 -11.58397 -11.37384 -11.24138 -11.16409 -11.03538 -10.59211 -10.29087 -9.38336 -8.19626 -6.33895 1.40282 1.42031 1.55352 1.79922 2.15201 2.42386 3.13286 3.58124 3.68400 3.82197 4.01488 4.04497 4.13306 4.23850 4.40040 4.46622 4.49111 4.52544 4.55641 4.61845 4.72188 4.80921 4.84296 4.90268 4.99051 5.02687 5.04705 5.09530 5.12975 5.17111 5.20189 5.22331 5.29472 5.36922 5.46928 5.50170 5.58780 5.61597 5.69710 5.74218 5.83567 6.16657 6.65282 6.85189 7.35899 7.42236 8.93305 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.004598 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.081421 B = 6088.544272 C = 6744.927991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C -0.068 4.068 4 C -0.126 4.126 5 C -0.130 4.130 6 C 0.138 3.862 7 H 0.048 0.952 8 C -0.118 4.118 9 C -0.122 4.122 10 C 0.089 3.911 11 N -0.613 5.613 12 C 0.511 3.489 13 O -0.562 6.562 14 C -0.112 4.112 15 C 0.048 3.952 16 C -0.543 4.543 17 H 0.073 0.927 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.042 0.958 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.093 0.907 43 H -0.020 1.020 44 H -0.020 1.020 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.635 -20.299 13.830 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.069 4.069 4 C -0.183 4.183 5 C -0.187 4.187 6 C 0.034 3.966 7 H 0.066 0.934 8 C -0.156 4.156 9 C -0.160 4.160 10 C -0.033 4.033 11 N -0.347 5.347 12 C 0.302 3.698 13 O -0.442 6.442 14 C -0.151 4.151 15 C 0.010 3.990 16 C -0.581 4.581 17 H 0.091 0.909 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.112 0.888 43 H -0.001 1.001 44 H -0.001 1.001 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.204 -20.190 13.128 24.084 hybrid contribution -0.010 1.385 -0.841 1.620 sum 0.194 -18.805 12.287 22.464 Atomic orbital electron populations 1.21914 0.95770 1.01974 1.01654 1.21545 0.96131 0.93733 1.02798 1.20891 0.94164 0.96624 0.95221 1.22203 0.98951 0.99858 0.97294 1.21828 1.00630 0.99044 0.97185 1.21841 0.93252 0.82254 0.99208 0.93356 1.22788 0.97965 0.98081 0.96753 1.22785 0.97591 0.91976 1.03675 1.22605 0.95358 0.99726 0.85641 1.48588 1.52845 1.08050 1.25216 1.20832 0.80192 0.85809 0.82964 1.90723 1.38647 1.85552 1.29237 1.21554 1.01336 0.90958 1.01278 1.18639 0.94510 0.92895 0.92953 1.21727 1.30889 0.94796 1.10643 0.90871 1.26136 0.95631 1.03883 0.94678 1.70190 1.39652 1.31603 1.16329 0.85270 0.78182 0.78009 0.78769 1.17617 1.20523 1.20510 0.93863 0.91410 0.92250 0.92347 0.89275 0.93678 0.94100 0.95114 0.90354 0.95515 0.92653 0.88587 0.88451 0.86981 0.90745 0.90383 0.90370 0.89026 0.88831 1.00127 1.00133 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.29 71.98 0.67 -2.13 16 2 C -0.10 -1.90 4.61 30.59 0.14 -1.76 16 3 C -0.07 -1.71 0.34 -52.18 -0.02 -1.73 16 4 C -0.13 -4.40 6.91 71.98 0.50 -3.91 16 5 C -0.13 -3.10 7.55 71.98 0.54 -2.56 16 6 C 0.14 3.40 2.39 45.34 0.11 3.51 16 7 H 0.05 1.39 7.91 -2.39 -0.02 1.37 16 8 C -0.12 -1.68 5.14 31.78 0.16 -1.52 16 9 C -0.12 -1.62 7.08 31.99 0.23 -1.39 16 10 C 0.09 1.79 6.71 86.86 0.58 2.37 16 11 N -0.61 -18.09 2.03 -788.06 -1.60 -19.69 16 12 C 0.51 20.97 7.02 87.66 0.62 21.59 16 13 O -0.56 -27.84 10.88 -3.03 -0.03 -27.87 16 14 C -0.11 -4.80 4.61 29.85 0.14 -4.66 16 15 C 0.05 2.75 4.26 29.85 0.13 2.88 16 16 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 17 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 18 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 19 N -0.94 -60.67 13.29 21.45 0.28 -60.38 16 20 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 21 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H 0.04 0.92 6.01 -2.38 -0.01 0.91 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.03 6.43 -2.38 -0.02 1.01 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 1.17 6.54 -2.38 -0.02 1.15 16 29 H 0.04 1.42 5.58 -2.38 -0.01 1.40 16 30 H 0.04 1.77 5.51 -2.81 -0.02 1.75 16 31 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 32 H 0.08 1.39 6.58 -2.39 -0.02 1.37 16 33 H 0.03 0.79 6.97 -2.39 -0.02 0.77 16 34 H 0.05 1.29 6.43 -2.38 -0.02 1.28 16 35 H 0.10 1.10 5.52 -2.39 -0.01 1.08 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.58 7.47 -2.39 -0.02 1.56 16 41 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 42 H 0.09 3.65 7.89 -2.39 -0.02 3.63 16 43 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 44 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 45 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -76.95 332.49 6.11 -70.84 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.95 Total: 10.72 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 4.49 Total: -20.76 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -1.32 Total: -80.08 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.03 Total: -27.87 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -76.95 6.11 -70.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361975294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.050 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds