Wall clock time and date at job start Mon Mar 30 2020 07:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47115 * 2 1 4 4 C 1.52995 * 109.47139 * 239.99354 * 2 1 3 5 5 C 1.50701 * 109.46944 * 60.00638 * 4 2 1 6 6 H 1.08000 * 120.00091 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00210 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99747 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47108 * 89.99577 * 9 7 5 11 11 H 1.48496 * 109.46811 * 210.00292 * 9 7 5 12 12 H 1.48505 * 109.46638 * 329.99775 * 9 7 5 13 13 C 1.53002 * 109.46601 * 119.99522 * 2 1 3 14 14 N 1.46903 * 109.47587 * 324.03203 * 13 2 1 15 15 C 1.47013 * 110.99879 * 182.46249 * 14 13 2 16 16 C 1.53096 * 109.25433 * 182.38800 * 15 14 13 17 17 O 1.43013 * 109.25986 * 303.15531 * 16 15 14 18 18 C 1.43014 * 113.74296 * 58.67062 * 17 16 15 19 19 H 1.09000 * 109.50422 * 61.26104 * 18 17 16 20 20 C 1.52993 * 109.50918 * 181.35083 * 18 17 16 21 21 C 1.52998 * 117.49969 * 8.65718 * 20 18 17 22 22 C 1.53001 * 117.49944 * 299.99531 * 20 18 17 23 23 C 1.47104 * 110.98267 * 306.12115 * 14 13 2 24 24 H 1.08999 * 109.47180 * 293.03262 * 1 2 3 25 25 H 1.09003 * 109.46487 * 53.02970 * 1 2 3 26 26 H 1.08992 * 109.47154 * 173.03165 * 1 2 3 27 27 H 1.09010 * 109.46737 * 191.67872 * 3 2 1 28 28 H 1.08999 * 109.47714 * 311.67869 * 3 2 1 29 29 H 1.09001 * 109.47436 * 71.68596 * 3 2 1 30 30 H 1.09005 * 109.47115 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47471 * 300.00566 * 4 2 1 32 32 H 0.97010 * 120.00194 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47201 * 204.02468 * 13 2 1 34 34 H 1.09007 * 109.47054 * 84.03309 * 13 2 1 35 35 H 1.09003 * 109.50690 * 62.46052 * 15 14 13 36 36 H 1.08994 * 109.51036 * 302.32424 * 15 14 13 37 37 H 1.08997 * 109.50907 * 183.21651 * 16 15 14 38 38 H 1.08995 * 109.54205 * 63.11253 * 16 15 14 39 39 H 1.09003 * 115.55115 * 154.32966 * 20 18 17 40 40 H 1.08997 * 117.50214 * 0.02562 * 21 20 18 41 41 H 1.09007 * 117.49859 * 145.02383 * 21 20 18 42 42 H 1.08998 * 117.50173 * 214.97596 * 22 20 18 43 43 H 1.08998 * 117.49837 * 359.97438 * 22 20 18 44 44 H 1.09000 * 109.56929 * 57.68461 * 23 14 13 45 45 H 1.09007 * 109.49741 * 297.52485 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9166 0.8669 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 2.6281 -1.5505 -3.8524 9 14 1.2494 0.3992 -5.2572 10 1 2.2278 1.4409 -5.6607 11 1 1.0847 -0.5798 -6.3616 12 1 -0.0589 1.0368 -4.9617 13 6 2.0399 -0.7212 1.2494 14 7 1.1463 -0.4343 2.3795 15 6 1.6382 -1.0646 3.6132 16 6 0.6488 -0.7908 4.7491 17 8 0.4761 0.6214 4.8941 18 6 -0.0026 1.2675 3.7114 19 1 -0.9807 0.8654 3.4476 20 6 -0.1195 2.7721 3.9628 21 6 0.4589 3.3169 5.2702 22 6 -1.0577 3.2307 5.0810 23 6 0.9799 1.0155 2.5646 24 1 -0.3633 0.4021 0.9457 25 1 -0.3632 0.6181 -0.8211 26 1 -0.3633 -1.0200 -0.1247 27 1 3.1101 1.4495 -0.2080 28 1 1.5169 2.0129 -0.7675 29 1 1.8567 1.8927 0.9756 30 1 3.1301 -0.7210 -1.2493 31 1 1.6766 -1.7490 -1.2491 32 1 2.8625 -1.8820 -4.7335 33 1 3.0460 -0.3737 1.4843 34 1 2.0603 -1.7955 1.0659 35 1 2.6123 -0.6488 3.8710 36 1 1.7293 -2.1400 3.4612 37 1 1.0373 -1.2074 5.6784 38 1 -0.3105 -1.2528 4.5162 39 1 -0.0450 3.4038 3.0776 40 1 0.9231 2.6036 5.9511 41 1 0.9136 4.3073 5.2453 42 1 -1.6000 4.1643 4.9318 43 1 -1.5919 2.4605 5.6373 44 1 0.5904 1.4583 1.6478 45 1 1.9435 1.4645 2.8056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364511873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:56 Heat of formation + Delta-G solvation = -8.849112 kcal Electronic energy + Delta-G solvation = -21818.483946 eV Core-core repulsion = 18837.229635 eV Total energy + Delta-G solvation = -2981.254311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11285 -37.76508 -36.43791 -34.17889 -32.19972 -30.94704 -28.23632 -27.09438 -26.37697 -25.06009 -23.65611 -22.66006 -22.40703 -20.69377 -20.05532 -17.95334 -16.67814 -16.19941 -16.01860 -15.55502 -15.15042 -14.73461 -14.48045 -14.40024 -13.90338 -13.55643 -13.21739 -12.70770 -12.56663 -12.08456 -11.90521 -11.64210 -11.54410 -11.31338 -11.24276 -11.00182 -10.89516 -10.76842 -10.60312 -10.50750 -10.37225 -10.21445 -10.11702 -9.94524 -9.69176 -9.49281 -8.89684 -8.75496 -8.31152 -8.07210 -5.95672 -3.95809 3.33364 3.40046 3.42809 3.60034 3.82194 4.05712 4.49154 4.65364 4.84782 4.92871 5.02480 5.18589 5.22608 5.32168 5.39033 5.40461 5.49196 5.60188 5.64495 5.69434 5.72731 5.81287 5.86183 5.96121 6.00922 6.07046 6.09042 6.20601 6.26914 6.33726 6.40042 6.58323 6.76123 6.86445 7.13097 7.17805 7.19693 7.26318 7.34441 7.40233 7.69801 7.86312 8.04181 8.48827 9.09488 9.67125 11.16022 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.004509 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.885793 B = 6208.922578 C = 6823.639671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.060 4.060 3 C -0.148 4.148 4 C 0.036 3.964 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.529 5.529 15 C 0.015 3.985 16 C 0.068 3.932 17 O -0.384 6.384 18 C 0.122 3.878 19 H 0.068 0.932 20 C -0.153 4.153 21 C -0.166 4.166 22 C -0.174 4.174 23 C 0.010 3.990 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 5.483 17.710 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.060 4.060 3 C -0.204 4.204 4 C -0.001 4.001 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.061 4.061 14 N -0.254 5.254 15 C -0.113 4.113 16 C -0.009 4.009 17 O -0.303 6.303 18 C 0.064 3.936 19 H 0.086 0.914 20 C -0.172 4.172 21 C -0.203 4.203 22 C -0.211 4.211 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.135 0.865 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.778 5.255 17.639 19.015 hybrid contribution 0.657 0.457 -1.143 1.396 sum -4.121 5.713 16.495 17.936 Atomic orbital electron populations 1.21819 0.94884 1.01408 0.99846 1.20646 0.95970 0.94844 0.94558 1.22295 1.00995 0.96895 1.00259 1.19150 0.95833 0.95106 0.90031 1.21226 1.30696 1.11893 0.90610 0.92415 1.25009 0.95418 0.95101 0.99032 1.69966 1.37329 1.23221 1.23273 0.86672 0.79226 0.79427 0.83146 1.20847 1.21364 1.19923 1.22338 0.92681 1.00959 0.90152 1.62395 1.49210 1.09987 1.03761 1.22759 0.96946 1.00523 0.91092 1.22593 0.98644 0.81789 0.97920 1.87901 1.86957 1.20211 1.35274 1.21623 0.96875 0.90522 0.84581 0.91372 1.22293 1.06328 0.94422 0.94131 1.22841 0.95893 1.01801 0.99734 1.22920 0.93143 1.02680 1.02375 1.23428 0.98687 0.89686 0.99929 0.93096 0.93157 0.93633 0.93600 0.92280 0.93433 0.96954 0.96594 0.93175 0.95520 0.90821 0.94463 0.89900 0.88949 0.92482 0.86592 0.87836 0.89309 0.89016 0.88768 0.86456 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 7.42 37.16 0.28 -2.06 16 2 C -0.06 -1.19 0.53 -154.51 -0.08 -1.27 16 3 C -0.15 -2.74 7.44 37.16 0.28 -2.47 16 4 C 0.04 0.91 3.89 -27.89 -0.11 0.80 16 5 C -0.51 -13.83 7.84 -34.44 -0.27 -14.10 16 6 H 0.06 1.54 5.77 -52.49 -0.30 1.23 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.07 1.15 4.61 -3.82 -0.02 1.13 16 14 N -0.53 -7.97 3.83 -234.22 -0.90 -8.87 16 15 C 0.02 0.20 5.67 -3.71 -0.02 0.18 16 16 C 0.07 0.77 7.01 37.21 0.26 1.03 16 17 O -0.38 -4.93 8.83 -35.23 -0.31 -5.24 16 18 C 0.12 1.54 3.16 -26.68 -0.08 1.46 16 19 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 20 C -0.15 -1.70 5.71 -90.62 -0.52 -2.22 16 21 C -0.17 -1.72 9.88 -26.69 -0.26 -1.98 16 22 C -0.17 -1.70 10.19 -26.69 -0.27 -1.98 16 23 C 0.01 0.14 2.42 -3.66 -0.01 0.13 16 24 H 0.05 0.85 4.72 -51.93 -0.25 0.61 16 25 H 0.05 1.01 6.79 -51.93 -0.35 0.66 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.89 8.10 -51.92 -0.42 0.47 16 28 H 0.06 1.15 6.94 -51.93 -0.36 0.79 16 29 H 0.05 0.75 4.08 -51.93 -0.21 0.54 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.03 0.47 7.92 -51.93 -0.41 0.06 16 34 H 0.07 1.34 7.91 -51.92 -0.41 0.93 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.12 1.21 8.12 -51.93 -0.42 0.79 16 40 H 0.10 1.17 7.06 -51.93 -0.37 0.81 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.12 1.74 3.46 -51.93 -0.18 1.56 16 45 H 0.04 0.58 7.64 -51.92 -0.40 0.19 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -29.35 334.36 -9.25 -38.60 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.86 Total: -0.08 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -0.93 Total: -19.88 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.16 Total: -35.03 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.31 Total: -5.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.35 -9.25 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364511873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.749 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds