Wall clock time and date at job start Mon Mar 30 2020 07:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47115 * 2 1 4 4 C 1.52995 * 109.47139 * 239.99354 * 2 1 3 5 5 C 1.50701 * 109.46944 * 60.00638 * 4 2 1 6 6 H 1.08000 * 120.00091 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00210 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99747 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47108 * 89.99577 * 9 7 5 11 11 H 1.48496 * 109.46811 * 210.00292 * 9 7 5 12 12 H 1.48505 * 109.46638 * 329.99775 * 9 7 5 13 13 C 1.53002 * 109.46601 * 119.99522 * 2 1 3 14 14 N 1.46903 * 109.47587 * 324.03203 * 13 2 1 15 15 C 1.47013 * 110.99879 * 182.46249 * 14 13 2 16 16 C 1.53096 * 109.25433 * 182.38800 * 15 14 13 17 17 O 1.43013 * 109.25986 * 303.15531 * 16 15 14 18 18 C 1.43014 * 113.74296 * 58.67062 * 17 16 15 19 19 H 1.09000 * 109.50422 * 61.26104 * 18 17 16 20 20 C 1.52993 * 109.50918 * 181.35083 * 18 17 16 21 21 C 1.52998 * 117.49969 * 8.65718 * 20 18 17 22 22 C 1.53001 * 117.49944 * 299.99531 * 20 18 17 23 23 C 1.47104 * 110.98267 * 306.12115 * 14 13 2 24 24 H 1.08999 * 109.47180 * 293.03262 * 1 2 3 25 25 H 1.09003 * 109.46487 * 53.02970 * 1 2 3 26 26 H 1.08992 * 109.47154 * 173.03165 * 1 2 3 27 27 H 1.09010 * 109.46737 * 191.67872 * 3 2 1 28 28 H 1.08999 * 109.47714 * 311.67869 * 3 2 1 29 29 H 1.09001 * 109.47436 * 71.68596 * 3 2 1 30 30 H 1.09005 * 109.47115 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47471 * 300.00566 * 4 2 1 32 32 H 0.97010 * 120.00194 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47201 * 204.02468 * 13 2 1 34 34 H 1.09007 * 109.47054 * 84.03309 * 13 2 1 35 35 H 1.09003 * 109.50690 * 62.46052 * 15 14 13 36 36 H 1.08994 * 109.51036 * 302.32424 * 15 14 13 37 37 H 1.08997 * 109.50907 * 183.21651 * 16 15 14 38 38 H 1.08995 * 109.54205 * 63.11253 * 16 15 14 39 39 H 1.09003 * 115.55115 * 154.32966 * 20 18 17 40 40 H 1.08997 * 117.50214 * 0.02562 * 21 20 18 41 41 H 1.09007 * 117.49859 * 145.02383 * 21 20 18 42 42 H 1.08998 * 117.50173 * 214.97596 * 22 20 18 43 43 H 1.08998 * 117.49837 * 359.97438 * 22 20 18 44 44 H 1.09000 * 109.56929 * 57.68461 * 23 14 13 45 45 H 1.09007 * 109.49741 * 297.52485 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9166 0.8669 -2.3806 7 6 1.8713 -0.4818 -3.7319 8 7 2.6281 -1.5505 -3.8524 9 14 1.2494 0.3992 -5.2572 10 1 2.2278 1.4409 -5.6607 11 1 1.0847 -0.5798 -6.3616 12 1 -0.0589 1.0368 -4.9617 13 6 2.0399 -0.7212 1.2494 14 7 1.1463 -0.4343 2.3795 15 6 1.6382 -1.0646 3.6132 16 6 0.6488 -0.7908 4.7491 17 8 0.4761 0.6214 4.8941 18 6 -0.0026 1.2675 3.7114 19 1 -0.9807 0.8654 3.4476 20 6 -0.1195 2.7721 3.9628 21 6 0.4589 3.3169 5.2702 22 6 -1.0577 3.2307 5.0810 23 6 0.9799 1.0155 2.5646 24 1 -0.3633 0.4021 0.9457 25 1 -0.3632 0.6181 -0.8211 26 1 -0.3633 -1.0200 -0.1247 27 1 3.1101 1.4495 -0.2080 28 1 1.5169 2.0129 -0.7675 29 1 1.8567 1.8927 0.9756 30 1 3.1301 -0.7210 -1.2493 31 1 1.6766 -1.7490 -1.2491 32 1 2.8625 -1.8820 -4.7335 33 1 3.0460 -0.3737 1.4843 34 1 2.0603 -1.7955 1.0659 35 1 2.6123 -0.6488 3.8710 36 1 1.7293 -2.1400 3.4612 37 1 1.0373 -1.2074 5.6784 38 1 -0.3105 -1.2528 4.5162 39 1 -0.0450 3.4038 3.0776 40 1 0.9231 2.6036 5.9511 41 1 0.9136 4.3073 5.2453 42 1 -1.6000 4.1643 4.9318 43 1 -1.5919 2.4605 5.6373 44 1 0.5904 1.4583 1.6478 45 1 1.9435 1.4645 2.8056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364511873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:56 Heat of formation + Delta-G solvation = -25.517013 kcal Electronic energy + Delta-G solvation = -21819.206720 eV Core-core repulsion = 18837.229635 eV Total energy + Delta-G solvation = -2981.977086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24790 -39.05087 -37.39992 -35.66955 -34.13435 -32.02418 -29.56384 -28.93736 -27.96154 -26.42913 -24.82969 -24.41148 -23.20128 -21.73461 -21.05320 -19.58664 -18.32560 -17.69612 -17.07325 -16.66825 -16.45490 -16.18346 -15.80234 -15.51111 -15.23470 -14.81919 -14.75373 -14.20500 -13.99329 -13.76197 -13.31521 -13.11454 -12.79700 -12.70908 -12.49449 -12.39980 -12.27415 -12.24836 -12.16613 -11.94443 -11.81092 -11.61319 -11.38482 -11.23868 -11.04882 -10.83891 -10.73106 -10.50851 -10.20937 -9.30407 -8.14262 -6.21522 1.40590 1.41170 1.51810 2.43315 2.72346 2.80492 3.06269 3.19822 3.72794 3.96088 3.98569 4.08190 4.12327 4.15623 4.26153 4.28054 4.35467 4.38783 4.45669 4.57152 4.68886 4.72217 4.82030 4.84821 4.85747 4.88623 4.92597 4.99180 5.05583 5.11682 5.15124 5.26454 5.31007 5.41021 5.49179 5.53849 5.54321 5.63558 5.83124 5.90429 6.05095 6.07387 6.26044 6.35539 6.93383 7.46076 8.98154 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.004509 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.885793 B = 6208.922578 C = 6823.639671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.056 4.056 3 C -0.141 4.141 4 C 0.043 3.957 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.076 3.924 14 N -0.533 5.533 15 C 0.014 3.986 16 C 0.069 3.931 17 O -0.390 6.390 18 C 0.127 3.873 19 H 0.065 0.935 20 C -0.166 4.166 21 C -0.166 4.166 22 C -0.164 4.164 23 C 0.012 3.988 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.029 0.971 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.079 0.921 30 H -0.018 1.018 31 H -0.015 1.015 32 H 0.260 0.740 33 H 0.025 0.975 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.060 0.940 39 H 0.123 0.877 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 7.062 18.954 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.056 4.056 3 C -0.197 4.197 4 C 0.005 3.995 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.186 1.186 13 C -0.052 4.052 14 N -0.258 5.258 15 C -0.114 4.114 16 C -0.008 4.008 17 O -0.310 6.310 18 C 0.069 3.931 19 H 0.083 0.917 20 C -0.185 4.185 21 C -0.203 4.203 22 C -0.200 4.200 23 C -0.115 4.115 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.001 0.999 31 H 0.003 0.997 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.983 6.844 18.903 20.975 hybrid contribution 1.054 -0.084 -1.470 1.810 sum -4.929 6.761 17.434 19.337 Atomic orbital electron populations 1.21724 0.93963 1.00359 1.00822 1.20497 0.96577 0.95316 0.93199 1.22238 0.99825 0.95854 1.01818 1.19025 0.93833 0.94024 0.92573 1.21602 1.30220 1.11933 0.91424 0.91675 1.25913 0.95687 0.95869 1.02559 1.70110 1.38866 1.24962 1.24034 0.85581 0.79127 0.78237 0.78942 1.20105 1.21251 1.18633 1.22065 0.92996 0.99818 0.90315 1.62354 1.48466 1.10894 1.04041 1.22861 0.97311 1.00796 0.90441 1.22718 0.98407 0.81269 0.98369 1.87912 1.86885 1.20929 1.35230 1.21568 0.95928 0.91704 0.83926 0.91709 1.22329 1.07802 0.93428 0.94906 1.22859 0.96473 1.02081 0.98869 1.22976 0.92875 1.03175 1.01018 1.23389 0.98924 0.88827 1.00395 0.90342 0.94338 0.95148 0.94935 0.93151 0.90244 0.99927 0.99671 0.93167 0.95707 0.92052 0.94739 0.89130 0.86387 0.92192 0.85910 0.88928 0.88067 0.87371 0.89042 0.87152 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 7.42 71.98 0.53 -3.68 16 2 C -0.06 -2.22 0.53 -52.18 -0.03 -2.25 16 3 C -0.14 -5.16 7.44 71.98 0.54 -4.62 16 4 C 0.04 2.25 3.89 29.85 0.12 2.36 16 5 C -0.51 -28.55 7.84 25.60 0.20 -28.35 16 6 H 0.07 3.46 5.77 -2.91 -0.02 3.44 16 7 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 8 N -0.94 -57.67 13.29 21.45 0.28 -57.38 16 9 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 C 0.08 2.66 4.61 86.30 0.40 3.06 16 14 N -0.53 -15.43 3.83 -894.95 -3.43 -18.86 16 15 C 0.01 0.34 5.67 86.31 0.49 0.83 16 16 C 0.07 1.40 7.01 72.01 0.50 1.90 16 17 O -0.39 -9.12 8.83 -148.98 -1.32 -10.43 16 18 C 0.13 2.93 3.16 30.62 0.10 3.03 16 19 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 20 C -0.17 -3.28 5.71 -10.80 -0.06 -3.34 16 21 C -0.17 -3.04 9.88 30.62 0.30 -2.73 16 22 C -0.16 -2.75 10.19 30.62 0.31 -2.44 16 23 C 0.01 0.32 2.42 86.30 0.21 0.52 16 24 H 0.08 2.51 4.72 -2.39 -0.01 2.50 16 25 H 0.04 1.52 6.79 -2.39 -0.02 1.50 16 26 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.03 1.25 8.10 -2.38 -0.02 1.23 16 28 H 0.05 1.91 6.94 -2.39 -0.02 1.90 16 29 H 0.08 2.40 4.08 -2.39 -0.01 2.39 16 30 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 31 H -0.02 -0.87 8.12 -2.39 -0.02 -0.89 16 32 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 33 H 0.02 0.87 7.92 -2.39 -0.02 0.85 16 34 H 0.06 2.29 7.91 -2.38 -0.02 2.27 16 35 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.12 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 2.24 8.12 -2.39 -0.02 2.22 16 40 H 0.09 1.92 7.06 -2.39 -0.02 1.90 16 41 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 3.05 3.46 -2.39 -0.01 3.05 16 45 H 0.03 0.95 7.64 -2.38 -0.02 0.93 16 Total: -1.00 -63.60 334.36 2.58 -61.02 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.95 Total: 14.56 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 4.07 Total: -35.46 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -3.14 Total: -76.24 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.32 Total: -10.43 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -63.60 2.58 -61.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364511873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.501 kcal (2) G-P(sol) polarization free energy of solvation -63.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds