Wall clock time and date at job start Mon Mar 30 2020 07:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47207 * 2 1 4 4 C 1.53002 * 109.46850 * 120.00249 * 2 1 3 5 5 C 1.50703 * 109.46951 * 299.99987 * 4 2 1 6 6 H 1.08005 * 119.99902 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99956 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99716 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99761 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46958 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47217 * 299.99706 * 9 7 5 12 12 H 1.48497 * 109.47094 * 59.99947 * 9 7 5 13 13 C 1.52995 * 109.47028 * 239.99720 * 2 1 3 14 14 N 1.46904 * 109.47301 * 54.19951 * 13 2 1 15 15 C 1.47012 * 110.99973 * 210.20325 * 14 13 2 16 16 C 1.53098 * 109.25587 * 177.60915 * 15 14 13 17 17 O 1.43012 * 109.26129 * 56.84591 * 16 15 14 18 18 C 1.43013 * 113.74003 * 301.33064 * 17 16 15 19 19 H 1.09000 * 109.54458 * 298.71507 * 18 17 16 20 20 C 1.52999 * 109.50705 * 178.60234 * 18 17 16 21 21 C 1.52998 * 117.49714 * 128.96712 * 20 18 17 22 22 C 1.53001 * 117.50020 * 60.30900 * 20 18 17 23 23 C 1.47009 * 110.99687 * 86.56804 * 14 13 2 24 24 H 1.08998 * 109.47037 * 304.97704 * 1 2 3 25 25 H 1.09007 * 109.46949 * 64.97810 * 1 2 3 26 26 H 1.09000 * 109.47438 * 184.97363 * 1 2 3 27 27 H 1.08995 * 109.47096 * 197.32864 * 3 2 1 28 28 H 1.09001 * 109.47208 * 317.33117 * 3 2 1 29 29 H 1.09001 * 109.46725 * 77.33231 * 3 2 1 30 30 H 1.08999 * 109.47217 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47534 * 59.99667 * 4 2 1 32 32 H 0.96999 * 120.00498 * 0.02562 * 8 7 5 33 33 H 1.09000 * 109.47415 * 174.19765 * 13 2 1 34 34 H 1.09002 * 109.47826 * 294.19677 * 13 2 1 35 35 H 1.09000 * 109.50911 * 297.53991 * 15 14 13 36 36 H 1.08994 * 109.50936 * 57.67527 * 15 14 13 37 37 H 1.09011 * 109.50638 * 296.91172 * 16 15 14 38 38 H 1.08998 * 109.54388 * 176.81101 * 16 15 14 39 39 H 1.09003 * 115.55215 * 274.63687 * 20 18 17 40 40 H 1.08994 * 117.50171 * 359.97438 * 21 20 18 41 41 H 1.09004 * 117.50241 * 145.01967 * 21 20 18 42 42 H 1.09002 * 117.49653 * 214.98269 * 22 20 18 43 43 H 1.09004 * 117.49825 * 359.97170 * 22 20 18 44 44 H 1.09000 * 109.50840 * 302.32795 * 23 14 13 45 45 H 1.09003 * 109.51302 * 62.41809 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8710 -0.4817 3.7320 8 7 2.6271 -1.5510 3.8526 9 14 1.2489 0.3993 5.2572 10 1 1.7437 -0.3008 6.4697 11 1 1.7440 1.7994 5.2567 12 1 -0.2361 0.3994 5.2576 13 6 2.0400 -0.7213 -1.2492 14 7 1.4394 -0.1144 -2.4446 15 6 1.2868 -1.1063 -3.5189 16 6 0.6046 -0.4478 -4.7209 17 8 1.3711 0.6861 -5.1357 18 6 1.5389 1.6726 -4.1139 19 1 0.5639 2.0567 -3.8142 20 6 2.3981 2.8204 -4.6481 21 6 1.8617 4.2430 -4.4773 22 6 1.8733 3.5901 -5.8617 23 6 2.2307 1.0355 -2.9057 24 1 -0.3633 0.5891 0.8420 25 1 -0.3633 0.4347 -0.9313 26 1 -0.3634 -1.0238 0.0891 27 1 3.0860 1.4580 -0.3061 28 1 1.4488 2.0369 -0.6965 29 1 1.9487 1.8601 1.0027 30 1 3.1300 -0.7218 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 2.9505 -2.0083 3.0607 33 1 3.1250 -0.6322 -1.3027 34 1 1.7640 -1.7746 -1.1988 35 1 2.2685 -1.4759 -3.8151 36 1 0.6765 -1.9365 -3.1638 37 1 -0.3981 -0.1259 -4.4391 38 1 0.5401 -1.1632 -5.5407 39 1 3.4758 2.6762 -4.5710 40 1 0.8966 4.3613 -3.9848 41 1 2.5865 5.0350 -4.2883 42 1 2.6058 3.9526 -6.5830 43 1 0.9162 3.2785 -6.2800 44 1 2.3094 1.7687 -2.1030 45 1 3.2278 0.7003 -3.1914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364511875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:01 Heat of formation + Delta-G solvation = -29.550893 kcal Electronic energy + Delta-G solvation = -21642.069656 eV Core-core repulsion = 18659.917648 eV Total energy + Delta-G solvation = -2982.152008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.94107 -37.64805 -36.64469 -34.48487 -32.30392 -31.01944 -28.10046 -26.66026 -26.37056 -24.84805 -23.95030 -22.62147 -22.42162 -20.75012 -20.38539 -18.23217 -16.51496 -16.41329 -16.19425 -15.58606 -15.21702 -14.86974 -14.56872 -13.86834 -13.80537 -13.61609 -13.24313 -13.10037 -12.61579 -12.26874 -11.71806 -11.69466 -11.60943 -11.51534 -11.28003 -11.05455 -10.90259 -10.87366 -10.63851 -10.54457 -10.42028 -10.19946 -10.08797 -10.07405 -9.73999 -9.56955 -9.14049 -8.42359 -8.26726 -8.07602 -6.28469 -3.96035 3.32790 3.46421 3.48204 3.66545 3.90771 4.04822 4.55146 4.59896 4.73032 4.89272 4.95325 5.07008 5.16328 5.19046 5.25550 5.44164 5.47338 5.49125 5.57546 5.62427 5.68574 5.73578 5.81017 5.91172 5.94319 5.95370 5.96752 6.11431 6.15962 6.23077 6.46370 6.61693 6.70061 6.79677 7.09480 7.10504 7.17023 7.19679 7.26549 7.34341 7.45796 7.62133 8.31136 8.54008 8.96196 9.74440 11.11390 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.004371 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.994431 B = 6405.042322 C = 6995.009966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.045 4.045 3 C -0.132 4.132 4 C 0.020 3.980 5 C -0.586 4.586 6 H 0.053 0.947 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.065 3.935 14 N -0.528 5.528 15 C 0.016 3.984 16 C 0.067 3.933 17 O -0.383 6.383 18 C 0.126 3.874 19 H 0.065 0.935 20 C -0.150 4.150 21 C -0.171 4.171 22 C -0.166 4.166 23 C 0.014 3.986 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.002 0.998 31 H 0.004 0.996 32 H 0.267 0.733 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 6.702 -18.173 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.045 4.045 3 C -0.189 4.189 4 C -0.017 4.017 5 C -0.625 4.625 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.215 1.215 13 C -0.062 4.062 14 N -0.253 5.253 15 C -0.113 4.113 16 C -0.011 4.011 17 O -0.302 6.302 18 C 0.068 3.932 19 H 0.083 0.917 20 C -0.168 4.168 21 C -0.208 4.208 22 C -0.203 4.203 23 C -0.114 4.114 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.020 0.980 31 H 0.022 0.978 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.123 0.877 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.826 6.846 -16.570 18.150 hybrid contribution 0.812 -0.511 -1.603 1.868 sum -2.014 6.336 -18.173 19.351 Atomic orbital electron populations 1.21567 0.94870 1.00457 1.00124 1.20421 0.95945 0.95008 0.93159 1.21975 0.98279 0.96631 1.02001 1.19264 0.95190 0.95079 0.92205 1.22011 1.34412 1.14224 0.91820 0.92886 1.25780 0.95385 0.96601 1.01352 1.70776 1.32867 1.18445 1.33350 0.83597 0.75900 0.75308 0.75815 1.20944 1.21557 1.21532 1.22384 0.96126 0.98046 0.89684 1.62206 1.50380 1.07890 1.04779 1.22813 1.00084 0.95630 0.92736 1.22618 0.94423 0.87854 0.96156 1.87952 1.74069 1.30599 1.37551 1.21644 0.97484 0.87404 0.86689 0.91659 1.22143 0.99478 0.91455 1.03758 1.23023 1.03020 0.94595 1.00205 1.22827 1.03131 1.03345 0.91005 1.23158 0.94751 0.95212 0.98245 0.92888 0.93454 0.94520 0.94700 0.93945 0.91188 0.97964 0.97770 0.92245 0.94831 0.91741 0.94499 0.89815 0.92488 0.88843 0.87470 0.88502 0.88397 0.88868 0.88568 0.87712 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 7.92 37.16 0.29 -1.93 16 2 C -0.04 -0.90 0.61 -154.51 -0.09 -1.00 16 3 C -0.13 -2.51 6.94 37.16 0.26 -2.26 16 4 C 0.02 0.50 3.35 -27.88 -0.09 0.41 16 5 C -0.59 -16.20 7.46 -34.44 -0.26 -16.46 16 6 H 0.05 1.44 5.84 -52.48 -0.31 1.13 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.19 13.65 55.43 0.76 -27.44 16 9 Si 1.06 25.37 29.90 -169.99 -5.08 20.28 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 1.14 4.22 -3.82 -0.02 1.12 16 14 N -0.53 -7.96 3.47 -234.31 -0.81 -8.78 16 15 C 0.02 0.21 5.52 -3.71 -0.02 0.19 16 16 C 0.07 0.77 7.01 37.21 0.26 1.03 16 17 O -0.38 -5.08 10.38 -35.23 -0.37 -5.45 16 18 C 0.13 1.59 3.00 -26.68 -0.08 1.51 16 19 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 20 C -0.15 -1.63 5.39 -90.62 -0.49 -2.12 16 21 C -0.17 -1.59 10.18 -26.70 -0.27 -1.86 16 22 C -0.17 -1.57 10.17 -26.69 -0.27 -1.85 16 23 C 0.01 0.20 4.43 -3.71 -0.02 0.19 16 24 H 0.05 1.11 6.79 -51.93 -0.35 0.76 16 25 H 0.05 0.84 7.28 -51.93 -0.38 0.46 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.63 7.49 -51.93 -0.39 0.24 16 28 H 0.04 0.72 6.46 -51.93 -0.34 0.38 16 29 H 0.07 1.49 6.25 -51.93 -0.32 1.17 16 30 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 31 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 32 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 33 H 0.03 0.60 7.70 -51.93 -0.40 0.20 16 34 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 37 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.11 1.16 8.11 -51.93 -0.42 0.74 16 40 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 1.53 4.23 -51.93 -0.22 1.31 16 45 H 0.04 0.52 8.11 -51.93 -0.42 0.10 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -30.14 340.51 -9.34 -39.48 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.07 Total: -0.46 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -0.89 Total: -22.78 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.06 Total: -36.21 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.37 Total: -5.45 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.14 -9.34 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364511875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.933 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds