Wall clock time and date at job start Mon Mar 30 2020 07:56:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52996 * 109.47207 * 2 1
4 4 C 1.53002 * 109.46850 * 120.00249 * 2 1 3
5 5 C 1.50703 * 109.46951 * 299.99987 * 4 2 1
6 6 H 1.08005 * 119.99902 * 359.97438 * 5 4 2
7 7 C 1.37880 * 119.99956 * 180.02562 * 5 4 2
8 8 N 1.31515 * 119.99716 * 359.97438 * 7 5 4
9 9 Si 1.86804 * 119.99761 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.46958 * 179.97438 * 9 7 5
11 11 H 1.48501 * 109.47217 * 299.99706 * 9 7 5
12 12 H 1.48497 * 109.47094 * 59.99947 * 9 7 5
13 13 C 1.52995 * 109.47028 * 239.99720 * 2 1 3
14 14 N 1.46904 * 109.47301 * 54.19951 * 13 2 1
15 15 C 1.47012 * 110.99973 * 210.20325 * 14 13 2
16 16 C 1.53098 * 109.25587 * 177.60915 * 15 14 13
17 17 O 1.43012 * 109.26129 * 56.84591 * 16 15 14
18 18 C 1.43013 * 113.74003 * 301.33064 * 17 16 15
19 19 H 1.09000 * 109.54458 * 298.71507 * 18 17 16
20 20 C 1.52999 * 109.50705 * 178.60234 * 18 17 16
21 21 C 1.52998 * 117.49714 * 128.96712 * 20 18 17
22 22 C 1.53001 * 117.50020 * 60.30900 * 20 18 17
23 23 C 1.47009 * 110.99687 * 86.56804 * 14 13 2
24 24 H 1.08998 * 109.47037 * 304.97704 * 1 2 3
25 25 H 1.09007 * 109.46949 * 64.97810 * 1 2 3
26 26 H 1.09000 * 109.47438 * 184.97363 * 1 2 3
27 27 H 1.08995 * 109.47096 * 197.32864 * 3 2 1
28 28 H 1.09001 * 109.47208 * 317.33117 * 3 2 1
29 29 H 1.09001 * 109.46725 * 77.33231 * 3 2 1
30 30 H 1.08999 * 109.47217 * 179.97438 * 4 2 1
31 31 H 1.08996 * 109.47534 * 59.99667 * 4 2 1
32 32 H 0.96999 * 120.00498 * 0.02562 * 8 7 5
33 33 H 1.09000 * 109.47415 * 174.19765 * 13 2 1
34 34 H 1.09002 * 109.47826 * 294.19677 * 13 2 1
35 35 H 1.09000 * 109.50911 * 297.53991 * 15 14 13
36 36 H 1.08994 * 109.50936 * 57.67527 * 15 14 13
37 37 H 1.09011 * 109.50638 * 296.91172 * 16 15 14
38 38 H 1.08998 * 109.54388 * 176.81101 * 16 15 14
39 39 H 1.09003 * 115.55215 * 274.63687 * 20 18 17
40 40 H 1.08994 * 117.50171 * 359.97438 * 21 20 18
41 41 H 1.09004 * 117.50241 * 145.01967 * 21 20 18
42 42 H 1.09002 * 117.49653 * 214.98269 * 22 20 18
43 43 H 1.09004 * 117.49825 * 359.97170 * 22 20 18
44 44 H 1.09000 * 109.50840 * 302.32795 * 23 14 13
45 45 H 1.09003 * 109.51302 * 62.41809 * 23 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.5376 -0.0109 2.4797
6 1 0.9170 0.8675 2.3806
7 6 1.8710 -0.4817 3.7320
8 7 2.6271 -1.5510 3.8526
9 14 1.2489 0.3993 5.2572
10 1 1.7437 -0.3008 6.4697
11 1 1.7440 1.7994 5.2567
12 1 -0.2361 0.3994 5.2576
13 6 2.0400 -0.7213 -1.2492
14 7 1.4394 -0.1144 -2.4446
15 6 1.2868 -1.1063 -3.5189
16 6 0.6046 -0.4478 -4.7209
17 8 1.3711 0.6861 -5.1357
18 6 1.5389 1.6726 -4.1139
19 1 0.5639 2.0567 -3.8142
20 6 2.3981 2.8204 -4.6481
21 6 1.8617 4.2430 -4.4773
22 6 1.8733 3.5901 -5.8617
23 6 2.2307 1.0355 -2.9057
24 1 -0.3633 0.5891 0.8420
25 1 -0.3633 0.4347 -0.9313
26 1 -0.3634 -1.0238 0.0891
27 1 3.0860 1.4580 -0.3061
28 1 1.4488 2.0369 -0.6965
29 1 1.9487 1.8601 1.0027
30 1 3.1300 -0.7218 1.2491
31 1 1.6766 -1.7489 1.2493
32 1 2.9505 -2.0083 3.0607
33 1 3.1250 -0.6322 -1.3027
34 1 1.7640 -1.7746 -1.1988
35 1 2.2685 -1.4759 -3.8151
36 1 0.6765 -1.9365 -3.1638
37 1 -0.3981 -0.1259 -4.4391
38 1 0.5401 -1.1632 -5.5407
39 1 3.4758 2.6762 -4.5710
40 1 0.8966 4.3613 -3.9848
41 1 2.5865 5.0350 -4.2883
42 1 2.6058 3.9526 -6.5830
43 1 0.9162 3.2785 -6.2800
44 1 2.3094 1.7687 -2.1030
45 1 3.2278 0.7003 -3.1914
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000364511875.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:56:01
Heat of formation + Delta-G solvation = -29.550893 kcal
Electronic energy + Delta-G solvation = -21642.069656 eV
Core-core repulsion = 18659.917648 eV
Total energy + Delta-G solvation = -2982.152008 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-39.94107 -37.64805 -36.64469 -34.48487 -32.30392 -31.01944 -28.10046 -26.66026
-26.37056 -24.84805 -23.95030 -22.62147 -22.42162 -20.75012 -20.38539 -18.23217
-16.51496 -16.41329 -16.19425 -15.58606 -15.21702 -14.86974 -14.56872 -13.86834
-13.80537 -13.61609 -13.24313 -13.10037 -12.61579 -12.26874 -11.71806 -11.69466
-11.60943 -11.51534 -11.28003 -11.05455 -10.90259 -10.87366 -10.63851 -10.54457
-10.42028 -10.19946 -10.08797 -10.07405 -9.73999 -9.56955 -9.14049 -8.42359
-8.26726 -8.07602 -6.28469 -3.96035 3.32790 3.46421 3.48204 3.66545
3.90771 4.04822 4.55146 4.59896 4.73032 4.89272 4.95325 5.07008
5.16328 5.19046 5.25550 5.44164 5.47338 5.49125 5.57546 5.62427
5.68574 5.73578 5.81017 5.91172 5.94319 5.95370 5.96752 6.11431
6.15962 6.23077 6.46370 6.61693 6.70061 6.79677 7.09480 7.10504
7.17023 7.19679 7.26549 7.34341 7.45796 7.62133 8.31136 8.54008
8.96196 9.74440 11.11390
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.028191 B = 0.004371 C = 0.004002
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 992.994431 B = 6405.042322 C = 6995.009966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.045 4.045
3 C -0.132 4.132
4 C 0.020 3.980
5 C -0.586 4.586
6 H 0.053 0.947
7 C 0.012 3.988
8 N -0.917 5.917
9 Si 1.065 2.935
10 H -0.284 1.284
11 H -0.289 1.289
12 H -0.289 1.289
13 C 0.065 3.935
14 N -0.528 5.528
15 C 0.016 3.984
16 C 0.067 3.933
17 O -0.383 6.383
18 C 0.126 3.874
19 H 0.065 0.935
20 C -0.150 4.150
21 C -0.171 4.171
22 C -0.166 4.166
23 C 0.014 3.986
24 H 0.052 0.948
25 H 0.046 0.954
26 H 0.036 0.964
27 H 0.034 0.966
28 H 0.042 0.958
29 H 0.069 0.931
30 H 0.002 0.998
31 H 0.004 0.996
32 H 0.267 0.733
33 H 0.033 0.967
34 H 0.064 0.936
35 H 0.037 0.963
36 H 0.083 0.917
37 H 0.057 0.943
38 H 0.093 0.907
39 H 0.107 0.893
40 H 0.097 0.903
41 H 0.098 0.902
42 H 0.093 0.907
43 H 0.096 0.904
44 H 0.105 0.895
45 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.459 6.702 -18.173 19.525
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.045 4.045
3 C -0.189 4.189
4 C -0.017 4.017
5 C -0.625 4.625
6 H 0.071 0.929
7 C -0.191 4.191
8 N -0.554 5.554
9 Si 0.894 3.106
10 H -0.209 1.209
11 H -0.216 1.216
12 H -0.215 1.215
13 C -0.062 4.062
14 N -0.253 5.253
15 C -0.113 4.113
16 C -0.011 4.011
17 O -0.302 6.302
18 C 0.068 3.932
19 H 0.083 0.917
20 C -0.168 4.168
21 C -0.208 4.208
22 C -0.203 4.203
23 C -0.114 4.114
24 H 0.071 0.929
25 H 0.065 0.935
26 H 0.055 0.945
27 H 0.053 0.947
28 H 0.061 0.939
29 H 0.088 0.912
30 H 0.020 0.980
31 H 0.022 0.978
32 H 0.078 0.922
33 H 0.052 0.948
34 H 0.083 0.917
35 H 0.055 0.945
36 H 0.102 0.898
37 H 0.075 0.925
38 H 0.112 0.888
39 H 0.125 0.875
40 H 0.115 0.885
41 H 0.116 0.884
42 H 0.111 0.889
43 H 0.114 0.886
44 H 0.123 0.877
45 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -2.826 6.846 -16.570 18.150
hybrid contribution 0.812 -0.511 -1.603 1.868
sum -2.014 6.336 -18.173 19.351
Atomic orbital electron populations
1.21567 0.94870 1.00457 1.00124 1.20421 0.95945 0.95008 0.93159
1.21975 0.98279 0.96631 1.02001 1.19264 0.95190 0.95079 0.92205
1.22011 1.34412 1.14224 0.91820 0.92886 1.25780 0.95385 0.96601
1.01352 1.70776 1.32867 1.18445 1.33350 0.83597 0.75900 0.75308
0.75815 1.20944 1.21557 1.21532 1.22384 0.96126 0.98046 0.89684
1.62206 1.50380 1.07890 1.04779 1.22813 1.00084 0.95630 0.92736
1.22618 0.94423 0.87854 0.96156 1.87952 1.74069 1.30599 1.37551
1.21644 0.97484 0.87404 0.86689 0.91659 1.22143 0.99478 0.91455
1.03758 1.23023 1.03020 0.94595 1.00205 1.22827 1.03131 1.03345
0.91005 1.23158 0.94751 0.95212 0.98245 0.92888 0.93454 0.94520
0.94700 0.93945 0.91188 0.97964 0.97770 0.92245 0.94831 0.91741
0.94499 0.89815 0.92488 0.88843 0.87470 0.88502 0.88397 0.88868
0.88568 0.87712 0.94637
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.22 7.92 37.16 0.29 -1.93 16
2 C -0.04 -0.90 0.61 -154.51 -0.09 -1.00 16
3 C -0.13 -2.51 6.94 37.16 0.26 -2.26 16
4 C 0.02 0.50 3.35 -27.88 -0.09 0.41 16
5 C -0.59 -16.20 7.46 -34.44 -0.26 -16.46 16
6 H 0.05 1.44 5.84 -52.48 -0.31 1.13 16
7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16
8 N -0.92 -28.19 13.65 55.43 0.76 -27.44 16
9 Si 1.06 25.37 29.90 -169.99 -5.08 20.28 16
10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16
12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
13 C 0.06 1.14 4.22 -3.82 -0.02 1.12 16
14 N -0.53 -7.96 3.47 -234.31 -0.81 -8.78 16
15 C 0.02 0.21 5.52 -3.71 -0.02 0.19 16
16 C 0.07 0.77 7.01 37.21 0.26 1.03 16
17 O -0.38 -5.08 10.38 -35.23 -0.37 -5.45 16
18 C 0.13 1.59 3.00 -26.68 -0.08 1.51 16
19 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16
20 C -0.15 -1.63 5.39 -90.62 -0.49 -2.12 16
21 C -0.17 -1.59 10.18 -26.70 -0.27 -1.86 16
22 C -0.17 -1.57 10.17 -26.69 -0.27 -1.85 16
23 C 0.01 0.20 4.43 -3.71 -0.02 0.19 16
24 H 0.05 1.11 6.79 -51.93 -0.35 0.76 16
25 H 0.05 0.84 7.28 -51.93 -0.38 0.46 16
26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16
27 H 0.03 0.63 7.49 -51.93 -0.39 0.24 16
28 H 0.04 0.72 6.46 -51.93 -0.34 0.38 16
29 H 0.07 1.49 6.25 -51.93 -0.32 1.17 16
30 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16
31 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16
32 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16
33 H 0.03 0.60 7.70 -51.93 -0.40 0.20 16
34 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16
35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16
36 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16
37 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16
38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
39 H 0.11 1.16 8.11 -51.93 -0.42 0.74 16
40 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16
41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16
42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
44 H 0.10 1.53 4.23 -51.93 -0.22 1.31 16
45 H 0.04 0.52 8.11 -51.93 -0.42 0.10 16
LS Contribution 340.51 15.07 5.13 5.13
Total: -1.00 -30.14 340.51 -9.34 -39.48
By element:
Atomic # 1 Polarization: 7.62 SS G_CDS: -8.07 Total: -0.46 kcal
Atomic # 6 Polarization: -21.89 SS G_CDS: -0.89 Total: -22.78 kcal
Atomic # 7 Polarization: -36.16 SS G_CDS: -0.06 Total: -36.21 kcal
Atomic # 8 Polarization: -5.08 SS G_CDS: -0.37 Total: -5.45 kcal
Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.28 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -30.14 -9.34 -39.48 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000364511875.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.933 kcal
(2) G-P(sol) polarization free energy of solvation -30.144 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.212 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.551 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds