Wall clock time and date at job start Mon Mar 30 2020 07:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47207 * 2 1 4 4 C 1.53002 * 109.46850 * 120.00249 * 2 1 3 5 5 C 1.50703 * 109.46951 * 299.99987 * 4 2 1 6 6 H 1.08005 * 119.99902 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99956 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99716 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99761 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46958 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47217 * 299.99706 * 9 7 5 12 12 H 1.48497 * 109.47094 * 59.99947 * 9 7 5 13 13 C 1.52995 * 109.47028 * 239.99720 * 2 1 3 14 14 N 1.46904 * 109.47301 * 54.19951 * 13 2 1 15 15 C 1.47012 * 110.99973 * 210.20325 * 14 13 2 16 16 C 1.53098 * 109.25587 * 177.60915 * 15 14 13 17 17 O 1.43012 * 109.26129 * 56.84591 * 16 15 14 18 18 C 1.43013 * 113.74003 * 301.33064 * 17 16 15 19 19 H 1.09000 * 109.54458 * 298.71507 * 18 17 16 20 20 C 1.52999 * 109.50705 * 178.60234 * 18 17 16 21 21 C 1.52998 * 117.49714 * 128.96712 * 20 18 17 22 22 C 1.53001 * 117.50020 * 60.30900 * 20 18 17 23 23 C 1.47009 * 110.99687 * 86.56804 * 14 13 2 24 24 H 1.08998 * 109.47037 * 304.97704 * 1 2 3 25 25 H 1.09007 * 109.46949 * 64.97810 * 1 2 3 26 26 H 1.09000 * 109.47438 * 184.97363 * 1 2 3 27 27 H 1.08995 * 109.47096 * 197.32864 * 3 2 1 28 28 H 1.09001 * 109.47208 * 317.33117 * 3 2 1 29 29 H 1.09001 * 109.46725 * 77.33231 * 3 2 1 30 30 H 1.08999 * 109.47217 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47534 * 59.99667 * 4 2 1 32 32 H 0.96999 * 120.00498 * 0.02562 * 8 7 5 33 33 H 1.09000 * 109.47415 * 174.19765 * 13 2 1 34 34 H 1.09002 * 109.47826 * 294.19677 * 13 2 1 35 35 H 1.09000 * 109.50911 * 297.53991 * 15 14 13 36 36 H 1.08994 * 109.50936 * 57.67527 * 15 14 13 37 37 H 1.09011 * 109.50638 * 296.91172 * 16 15 14 38 38 H 1.08998 * 109.54388 * 176.81101 * 16 15 14 39 39 H 1.09003 * 115.55215 * 274.63687 * 20 18 17 40 40 H 1.08994 * 117.50171 * 359.97438 * 21 20 18 41 41 H 1.09004 * 117.50241 * 145.01967 * 21 20 18 42 42 H 1.09002 * 117.49653 * 214.98269 * 22 20 18 43 43 H 1.09004 * 117.49825 * 359.97170 * 22 20 18 44 44 H 1.09000 * 109.50840 * 302.32795 * 23 14 13 45 45 H 1.09003 * 109.51302 * 62.41809 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8710 -0.4817 3.7320 8 7 2.6271 -1.5510 3.8526 9 14 1.2489 0.3993 5.2572 10 1 1.7437 -0.3008 6.4697 11 1 1.7440 1.7994 5.2567 12 1 -0.2361 0.3994 5.2576 13 6 2.0400 -0.7213 -1.2492 14 7 1.4394 -0.1144 -2.4446 15 6 1.2868 -1.1063 -3.5189 16 6 0.6046 -0.4478 -4.7209 17 8 1.3711 0.6861 -5.1357 18 6 1.5389 1.6726 -4.1139 19 1 0.5639 2.0567 -3.8142 20 6 2.3981 2.8204 -4.6481 21 6 1.8617 4.2430 -4.4773 22 6 1.8733 3.5901 -5.8617 23 6 2.2307 1.0355 -2.9057 24 1 -0.3633 0.5891 0.8420 25 1 -0.3633 0.4347 -0.9313 26 1 -0.3634 -1.0238 0.0891 27 1 3.0860 1.4580 -0.3061 28 1 1.4488 2.0369 -0.6965 29 1 1.9487 1.8601 1.0027 30 1 3.1300 -0.7218 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 2.9505 -2.0083 3.0607 33 1 3.1250 -0.6322 -1.3027 34 1 1.7640 -1.7746 -1.1988 35 1 2.2685 -1.4759 -3.8151 36 1 0.6765 -1.9365 -3.1638 37 1 -0.3981 -0.1259 -4.4391 38 1 0.5401 -1.1632 -5.5407 39 1 3.4758 2.6762 -4.5710 40 1 0.8966 4.3613 -3.9848 41 1 2.5865 5.0350 -4.2883 42 1 2.6058 3.9526 -6.5830 43 1 0.9162 3.2785 -6.2800 44 1 2.3094 1.7687 -2.1030 45 1 3.2278 0.7003 -3.1914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364511875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:00 Heat of formation + Delta-G solvation = -46.554899 kcal Electronic energy + Delta-G solvation = -21642.807005 eV Core-core repulsion = 18659.917648 eV Total energy + Delta-G solvation = -2982.889357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03819 -38.98732 -37.61575 -35.97185 -34.27386 -32.02721 -29.41686 -28.51729 -28.02314 -26.27119 -25.11133 -24.42378 -23.15227 -21.73050 -21.41619 -19.93655 -18.46091 -17.50106 -17.26047 -16.73799 -16.44890 -15.94504 -15.68088 -15.61387 -15.18471 -15.06801 -14.72993 -14.30847 -14.15251 -13.59376 -13.48081 -13.15309 -12.90966 -12.81266 -12.55449 -12.39037 -12.37419 -12.18667 -12.02565 -11.94588 -11.82172 -11.64862 -11.43814 -11.27103 -11.14588 -10.97578 -10.66842 -10.48114 -10.29735 -9.35271 -8.59438 -6.27296 1.53554 1.61910 1.80096 2.46693 2.59891 2.78677 3.19646 3.23533 3.63759 3.88081 3.93484 3.96920 4.06948 4.09425 4.18844 4.22129 4.25835 4.30667 4.39793 4.51193 4.61022 4.64037 4.70654 4.78682 4.80670 4.83276 4.88455 4.94066 4.95913 5.05082 5.08048 5.11782 5.25400 5.28470 5.33523 5.36996 5.50856 5.61008 5.70273 5.93238 6.01399 6.15389 6.21714 6.28647 6.67853 7.52370 8.80664 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.004371 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.994431 B = 6405.042322 C = 6995.009966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.043 4.043 3 C -0.122 4.122 4 C 0.024 3.976 5 C -0.588 4.588 6 H 0.058 0.942 7 C -0.045 4.045 8 N -0.947 5.947 9 Si 1.112 2.888 10 H -0.288 1.288 11 H -0.269 1.269 12 H -0.270 1.270 13 C 0.076 3.924 14 N -0.530 5.530 15 C 0.014 3.986 16 C 0.068 3.932 17 O -0.393 6.393 18 C 0.131 3.869 19 H 0.064 0.936 20 C -0.167 4.167 21 C -0.163 4.163 22 C -0.160 4.160 23 C 0.016 3.984 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.045 0.955 30 H -0.022 1.022 31 H -0.020 1.020 32 H 0.252 0.748 33 H 0.026 0.974 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 8.305 -19.536 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.043 4.043 3 C -0.179 4.179 4 C -0.013 4.013 5 C -0.626 4.626 6 H 0.076 0.924 7 C -0.241 4.241 8 N -0.585 5.585 9 Si 0.934 3.066 10 H -0.214 1.214 11 H -0.194 1.194 12 H -0.195 1.195 13 C -0.052 4.052 14 N -0.254 5.254 15 C -0.114 4.114 16 C -0.009 4.009 17 O -0.312 6.312 18 C 0.074 3.926 19 H 0.082 0.918 20 C -0.186 4.186 21 C -0.200 4.200 22 C -0.197 4.197 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.064 0.936 30 H -0.004 1.004 31 H -0.002 1.002 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.914 8.459 -17.970 20.243 hybrid contribution 1.159 -1.040 -1.248 1.995 sum -2.755 7.418 -19.217 20.783 Atomic orbital electron populations 1.21462 0.94112 0.99795 1.00583 1.20319 0.96421 0.95455 0.92126 1.21866 0.99042 0.95809 1.01165 1.19186 0.93528 0.94214 0.94380 1.22371 1.33546 1.14055 0.92661 0.92375 1.27301 0.95013 0.96576 1.05186 1.70916 1.34983 1.20034 1.32592 0.82993 0.76494 0.75056 0.72034 1.21412 1.19438 1.19508 1.22102 0.95624 0.97559 0.89938 1.62147 1.49964 1.08566 1.04711 1.22912 1.00309 0.95525 0.92634 1.22745 0.94045 0.87819 0.96251 1.87954 1.74337 1.31059 1.37880 1.21604 0.97417 0.87627 0.85985 0.91827 1.22136 0.99196 0.91787 1.05501 1.23109 1.03255 0.93750 0.99884 1.22886 1.03187 1.02506 0.91101 1.23156 0.94562 0.94653 0.98803 0.94467 0.91111 0.95379 0.94294 0.91384 0.93632 1.00407 1.00181 0.93850 0.95608 0.92163 0.94856 0.89071 0.92063 0.86366 0.87664 0.88332 0.87122 0.87629 0.88786 0.88256 0.95364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.93 7.92 71.98 0.57 -3.36 16 2 C -0.04 -1.72 0.61 -52.18 -0.03 -1.75 16 3 C -0.12 -4.55 6.94 71.98 0.50 -4.05 16 4 C 0.02 1.27 3.35 29.85 0.10 1.37 16 5 C -0.59 -32.93 7.46 25.60 0.19 -32.73 16 6 H 0.06 3.15 5.84 -2.91 -0.02 3.13 16 7 C -0.04 -2.59 5.46 84.66 0.46 -2.13 16 8 N -0.95 -59.68 13.65 21.45 0.29 -59.38 16 9 Si 1.11 50.77 29.90 68.60 2.05 52.82 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.08 2.64 4.22 86.30 0.36 3.00 16 14 N -0.53 -15.22 3.47 -895.22 -3.10 -18.32 16 15 C 0.01 0.35 5.52 86.31 0.48 0.82 16 16 C 0.07 1.41 7.01 72.01 0.50 1.91 16 17 O -0.39 -9.57 10.38 -148.98 -1.55 -11.12 16 18 C 0.13 3.07 3.00 30.63 0.09 3.16 16 19 H 0.06 1.51 7.90 -2.39 -0.02 1.49 16 20 C -0.17 -3.33 5.39 -10.79 -0.06 -3.39 16 21 C -0.16 -2.62 10.18 30.62 0.31 -2.31 16 22 C -0.16 -2.65 10.17 30.62 0.31 -2.34 16 23 C 0.02 0.43 4.43 86.32 0.38 0.81 16 24 H 0.04 1.52 6.79 -2.39 -0.02 1.51 16 25 H 0.07 2.38 7.28 -2.38 -0.02 2.36 16 26 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 1.39 7.49 -2.39 -0.02 1.37 16 28 H 0.07 2.18 6.46 -2.39 -0.02 2.17 16 29 H 0.04 1.91 6.25 -2.39 -0.01 1.90 16 30 H -0.02 -1.26 8.01 -2.39 -0.02 -1.28 16 31 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 32 H 0.25 16.17 7.22 -92.71 -0.67 15.50 16 33 H 0.03 0.93 7.70 -2.39 -0.02 0.91 16 34 H 0.06 2.13 7.69 -2.39 -0.02 2.11 16 35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 2.08 8.00 -2.39 -0.02 2.06 16 37 H 0.06 1.23 8.14 -2.38 -0.02 1.22 16 38 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.11 2.12 8.11 -2.39 -0.02 2.10 16 40 H 0.10 1.56 8.05 -2.39 -0.02 1.54 16 41 H 0.11 1.49 8.14 -2.38 -0.02 1.48 16 42 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.10 2.75 4.23 -2.39 -0.01 2.74 16 45 H 0.03 0.80 8.11 -2.39 -0.02 0.78 16 Total: -1.00 -65.15 340.51 2.90 -62.25 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.04 Total: 14.75 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 4.18 Total: -40.99 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -2.81 Total: -77.71 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -1.55 Total: -11.12 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -65.15 2.90 -62.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364511875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.696 kcal (2) G-P(sol) polarization free energy of solvation -65.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds