Wall clock time and date at job start Mon Mar 30 2020 07:56:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52996 * 109.47207 * 2 1
4 4 C 1.53002 * 109.46850 * 120.00249 * 2 1 3
5 5 C 1.50703 * 109.46951 * 299.99987 * 4 2 1
6 6 H 1.08005 * 119.99902 * 359.97438 * 5 4 2
7 7 C 1.37880 * 119.99956 * 180.02562 * 5 4 2
8 8 N 1.31515 * 119.99716 * 359.97438 * 7 5 4
9 9 Si 1.86804 * 119.99761 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.46958 * 179.97438 * 9 7 5
11 11 H 1.48501 * 109.47217 * 299.99706 * 9 7 5
12 12 H 1.48497 * 109.47094 * 59.99947 * 9 7 5
13 13 C 1.52995 * 109.47028 * 239.99720 * 2 1 3
14 14 N 1.46904 * 109.47301 * 54.19951 * 13 2 1
15 15 C 1.47012 * 110.99973 * 210.20325 * 14 13 2
16 16 C 1.53098 * 109.25587 * 177.60915 * 15 14 13
17 17 O 1.43012 * 109.26129 * 56.84591 * 16 15 14
18 18 C 1.43013 * 113.74003 * 301.33064 * 17 16 15
19 19 H 1.09000 * 109.54458 * 298.71507 * 18 17 16
20 20 C 1.52999 * 109.50705 * 178.60234 * 18 17 16
21 21 C 1.52998 * 117.49714 * 128.96712 * 20 18 17
22 22 C 1.53001 * 117.50020 * 60.30900 * 20 18 17
23 23 C 1.47009 * 110.99687 * 86.56804 * 14 13 2
24 24 H 1.08998 * 109.47037 * 304.97704 * 1 2 3
25 25 H 1.09007 * 109.46949 * 64.97810 * 1 2 3
26 26 H 1.09000 * 109.47438 * 184.97363 * 1 2 3
27 27 H 1.08995 * 109.47096 * 197.32864 * 3 2 1
28 28 H 1.09001 * 109.47208 * 317.33117 * 3 2 1
29 29 H 1.09001 * 109.46725 * 77.33231 * 3 2 1
30 30 H 1.08999 * 109.47217 * 179.97438 * 4 2 1
31 31 H 1.08996 * 109.47534 * 59.99667 * 4 2 1
32 32 H 0.96999 * 120.00498 * 0.02562 * 8 7 5
33 33 H 1.09000 * 109.47415 * 174.19765 * 13 2 1
34 34 H 1.09002 * 109.47826 * 294.19677 * 13 2 1
35 35 H 1.09000 * 109.50911 * 297.53991 * 15 14 13
36 36 H 1.08994 * 109.50936 * 57.67527 * 15 14 13
37 37 H 1.09011 * 109.50638 * 296.91172 * 16 15 14
38 38 H 1.08998 * 109.54388 * 176.81101 * 16 15 14
39 39 H 1.09003 * 115.55215 * 274.63687 * 20 18 17
40 40 H 1.08994 * 117.50171 * 359.97438 * 21 20 18
41 41 H 1.09004 * 117.50241 * 145.01967 * 21 20 18
42 42 H 1.09002 * 117.49653 * 214.98269 * 22 20 18
43 43 H 1.09004 * 117.49825 * 359.97170 * 22 20 18
44 44 H 1.09000 * 109.50840 * 302.32795 * 23 14 13
45 45 H 1.09003 * 109.51302 * 62.41809 * 23 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.5376 -0.0109 2.4797
6 1 0.9170 0.8675 2.3806
7 6 1.8710 -0.4817 3.7320
8 7 2.6271 -1.5510 3.8526
9 14 1.2489 0.3993 5.2572
10 1 1.7437 -0.3008 6.4697
11 1 1.7440 1.7994 5.2567
12 1 -0.2361 0.3994 5.2576
13 6 2.0400 -0.7213 -1.2492
14 7 1.4394 -0.1144 -2.4446
15 6 1.2868 -1.1063 -3.5189
16 6 0.6046 -0.4478 -4.7209
17 8 1.3711 0.6861 -5.1357
18 6 1.5389 1.6726 -4.1139
19 1 0.5639 2.0567 -3.8142
20 6 2.3981 2.8204 -4.6481
21 6 1.8617 4.2430 -4.4773
22 6 1.8733 3.5901 -5.8617
23 6 2.2307 1.0355 -2.9057
24 1 -0.3633 0.5891 0.8420
25 1 -0.3633 0.4347 -0.9313
26 1 -0.3634 -1.0238 0.0891
27 1 3.0860 1.4580 -0.3061
28 1 1.4488 2.0369 -0.6965
29 1 1.9487 1.8601 1.0027
30 1 3.1300 -0.7218 1.2491
31 1 1.6766 -1.7489 1.2493
32 1 2.9505 -2.0083 3.0607
33 1 3.1250 -0.6322 -1.3027
34 1 1.7640 -1.7746 -1.1988
35 1 2.2685 -1.4759 -3.8151
36 1 0.6765 -1.9365 -3.1638
37 1 -0.3981 -0.1259 -4.4391
38 1 0.5401 -1.1632 -5.5407
39 1 3.4758 2.6762 -4.5710
40 1 0.8966 4.3613 -3.9848
41 1 2.5865 5.0350 -4.2883
42 1 2.6058 3.9526 -6.5830
43 1 0.9162 3.2785 -6.2800
44 1 2.3094 1.7687 -2.1030
45 1 3.2278 0.7003 -3.1914
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000364511875.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:56:00
Heat of formation + Delta-G solvation = -46.554899 kcal
Electronic energy + Delta-G solvation = -21642.807005 eV
Core-core repulsion = 18659.917648 eV
Total energy + Delta-G solvation = -2982.889357 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 267.194 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.03819 -38.98732 -37.61575 -35.97185 -34.27386 -32.02721 -29.41686 -28.51729
-28.02314 -26.27119 -25.11133 -24.42378 -23.15227 -21.73050 -21.41619 -19.93655
-18.46091 -17.50106 -17.26047 -16.73799 -16.44890 -15.94504 -15.68088 -15.61387
-15.18471 -15.06801 -14.72993 -14.30847 -14.15251 -13.59376 -13.48081 -13.15309
-12.90966 -12.81266 -12.55449 -12.39037 -12.37419 -12.18667 -12.02565 -11.94588
-11.82172 -11.64862 -11.43814 -11.27103 -11.14588 -10.97578 -10.66842 -10.48114
-10.29735 -9.35271 -8.59438 -6.27296 1.53554 1.61910 1.80096 2.46693
2.59891 2.78677 3.19646 3.23533 3.63759 3.88081 3.93484 3.96920
4.06948 4.09425 4.18844 4.22129 4.25835 4.30667 4.39793 4.51193
4.61022 4.64037 4.70654 4.78682 4.80670 4.83276 4.88455 4.94066
4.95913 5.05082 5.08048 5.11782 5.25400 5.28470 5.33523 5.36996
5.50856 5.61008 5.70273 5.93238 6.01399 6.15389 6.21714 6.28647
6.67853 7.52370 8.80664
Molecular weight = 267.19amu
Principal moments of inertia in cm(-1)
A = 0.028191 B = 0.004371 C = 0.004002
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 992.994431 B = 6405.042322 C = 6995.009966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C -0.043 4.043
3 C -0.122 4.122
4 C 0.024 3.976
5 C -0.588 4.588
6 H 0.058 0.942
7 C -0.045 4.045
8 N -0.947 5.947
9 Si 1.112 2.888
10 H -0.288 1.288
11 H -0.269 1.269
12 H -0.270 1.270
13 C 0.076 3.924
14 N -0.530 5.530
15 C 0.014 3.986
16 C 0.068 3.932
17 O -0.393 6.393
18 C 0.131 3.869
19 H 0.064 0.936
20 C -0.167 4.167
21 C -0.163 4.163
22 C -0.160 4.160
23 C 0.016 3.984
24 H 0.036 0.964
25 H 0.070 0.930
26 H 0.027 0.973
27 H 0.038 0.962
28 H 0.067 0.933
29 H 0.045 0.955
30 H -0.022 1.022
31 H -0.020 1.020
32 H 0.252 0.748
33 H 0.026 0.974
34 H 0.060 0.940
35 H 0.033 0.967
36 H 0.091 0.909
37 H 0.061 0.939
38 H 0.118 0.882
39 H 0.105 0.895
40 H 0.098 0.902
41 H 0.110 0.890
42 H 0.105 0.895
43 H 0.094 0.906
44 H 0.099 0.901
45 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.539 8.305 -19.536 21.521
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.043 4.043
3 C -0.179 4.179
4 C -0.013 4.013
5 C -0.626 4.626
6 H 0.076 0.924
7 C -0.241 4.241
8 N -0.585 5.585
9 Si 0.934 3.066
10 H -0.214 1.214
11 H -0.194 1.194
12 H -0.195 1.195
13 C -0.052 4.052
14 N -0.254 5.254
15 C -0.114 4.114
16 C -0.009 4.009
17 O -0.312 6.312
18 C 0.074 3.926
19 H 0.082 0.918
20 C -0.186 4.186
21 C -0.200 4.200
22 C -0.197 4.197
23 C -0.112 4.112
24 H 0.055 0.945
25 H 0.089 0.911
26 H 0.046 0.954
27 H 0.057 0.943
28 H 0.086 0.914
29 H 0.064 0.936
30 H -0.004 1.004
31 H -0.002 1.002
32 H 0.062 0.938
33 H 0.044 0.956
34 H 0.078 0.922
35 H 0.051 0.949
36 H 0.109 0.891
37 H 0.079 0.921
38 H 0.136 0.864
39 H 0.123 0.877
40 H 0.117 0.883
41 H 0.129 0.871
42 H 0.124 0.876
43 H 0.112 0.888
44 H 0.117 0.883
45 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges -3.914 8.459 -17.970 20.243
hybrid contribution 1.159 -1.040 -1.248 1.995
sum -2.755 7.418 -19.217 20.783
Atomic orbital electron populations
1.21462 0.94112 0.99795 1.00583 1.20319 0.96421 0.95455 0.92126
1.21866 0.99042 0.95809 1.01165 1.19186 0.93528 0.94214 0.94380
1.22371 1.33546 1.14055 0.92661 0.92375 1.27301 0.95013 0.96576
1.05186 1.70916 1.34983 1.20034 1.32592 0.82993 0.76494 0.75056
0.72034 1.21412 1.19438 1.19508 1.22102 0.95624 0.97559 0.89938
1.62147 1.49964 1.08566 1.04711 1.22912 1.00309 0.95525 0.92634
1.22745 0.94045 0.87819 0.96251 1.87954 1.74337 1.31059 1.37880
1.21604 0.97417 0.87627 0.85985 0.91827 1.22136 0.99196 0.91787
1.05501 1.23109 1.03255 0.93750 0.99884 1.22886 1.03187 1.02506
0.91101 1.23156 0.94562 0.94653 0.98803 0.94467 0.91111 0.95379
0.94294 0.91384 0.93632 1.00407 1.00181 0.93850 0.95608 0.92163
0.94856 0.89071 0.92063 0.86366 0.87664 0.88332 0.87122 0.87629
0.88786 0.88256 0.95364
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -3.93 7.92 71.98 0.57 -3.36 16
2 C -0.04 -1.72 0.61 -52.18 -0.03 -1.75 16
3 C -0.12 -4.55 6.94 71.98 0.50 -4.05 16
4 C 0.02 1.27 3.35 29.85 0.10 1.37 16
5 C -0.59 -32.93 7.46 25.60 0.19 -32.73 16
6 H 0.06 3.15 5.84 -2.91 -0.02 3.13 16
7 C -0.04 -2.59 5.46 84.66 0.46 -2.13 16
8 N -0.95 -59.68 13.65 21.45 0.29 -59.38 16
9 Si 1.11 50.77 29.90 68.60 2.05 52.82 16
10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16
11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16
12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16
13 C 0.08 2.64 4.22 86.30 0.36 3.00 16
14 N -0.53 -15.22 3.47 -895.22 -3.10 -18.32 16
15 C 0.01 0.35 5.52 86.31 0.48 0.82 16
16 C 0.07 1.41 7.01 72.01 0.50 1.91 16
17 O -0.39 -9.57 10.38 -148.98 -1.55 -11.12 16
18 C 0.13 3.07 3.00 30.63 0.09 3.16 16
19 H 0.06 1.51 7.90 -2.39 -0.02 1.49 16
20 C -0.17 -3.33 5.39 -10.79 -0.06 -3.39 16
21 C -0.16 -2.62 10.18 30.62 0.31 -2.31 16
22 C -0.16 -2.65 10.17 30.62 0.31 -2.34 16
23 C 0.02 0.43 4.43 86.32 0.38 0.81 16
24 H 0.04 1.52 6.79 -2.39 -0.02 1.51 16
25 H 0.07 2.38 7.28 -2.38 -0.02 2.36 16
26 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16
27 H 0.04 1.39 7.49 -2.39 -0.02 1.37 16
28 H 0.07 2.18 6.46 -2.39 -0.02 2.17 16
29 H 0.04 1.91 6.25 -2.39 -0.01 1.90 16
30 H -0.02 -1.26 8.01 -2.39 -0.02 -1.28 16
31 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16
32 H 0.25 16.17 7.22 -92.71 -0.67 15.50 16
33 H 0.03 0.93 7.70 -2.39 -0.02 0.91 16
34 H 0.06 2.13 7.69 -2.39 -0.02 2.11 16
35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16
36 H 0.09 2.08 8.00 -2.39 -0.02 2.06 16
37 H 0.06 1.23 8.14 -2.38 -0.02 1.22 16
38 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16
39 H 0.11 2.12 8.11 -2.39 -0.02 2.10 16
40 H 0.10 1.56 8.05 -2.39 -0.02 1.54 16
41 H 0.11 1.49 8.14 -2.38 -0.02 1.48 16
42 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16
43 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16
44 H 0.10 2.75 4.23 -2.39 -0.01 2.74 16
45 H 0.03 0.80 8.11 -2.39 -0.02 0.78 16
Total: -1.00 -65.15 340.51 2.90 -62.25
By element:
Atomic # 1 Polarization: 13.71 SS G_CDS: 1.04 Total: 14.75 kcal
Atomic # 6 Polarization: -45.17 SS G_CDS: 4.18 Total: -40.99 kcal
Atomic # 7 Polarization: -74.90 SS G_CDS: -2.81 Total: -77.71 kcal
Atomic # 8 Polarization: -9.57 SS G_CDS: -1.55 Total: -11.12 kcal
Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal
Total: -65.15 2.90 -62.25 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000364511875.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.696 kcal
(2) G-P(sol) polarization free energy of solvation -65.154 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.459 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.555 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds