Wall clock time and date at job start Mon Mar 30 2020 07:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47422 * 2 1 4 4 C 1.53002 * 109.47150 * 240.00034 * 2 1 3 5 5 C 1.53002 * 109.47033 * 119.99844 * 2 1 3 6 6 H 1.09005 * 110.88380 * 183.13626 * 5 2 1 7 7 C 1.54631 * 110.97055 * 59.32687 * 5 2 1 8 8 C 1.51282 * 104.19550 * 217.08387 * 7 5 2 9 9 O 1.21275 * 124.93781 * 196.22844 * 8 7 5 10 10 N 1.34422 * 110.11368 * 16.24918 * 8 7 5 11 11 C 1.46499 * 124.34554 * 180.40603 * 10 8 7 12 12 C 1.53005 * 109.47022 * 90.02962 * 11 10 8 13 13 C 1.52999 * 109.47152 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.46944 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47026 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00133 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00143 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99897 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00153 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47198 * 120.00368 * 19 17 15 22 22 H 1.48505 * 109.47176 * 240.00160 * 19 17 15 23 23 C 1.46763 * 111.30121 * 0.67516 * 10 8 7 24 24 H 1.09003 * 109.47398 * 306.68143 * 1 2 3 25 25 H 1.09002 * 109.47272 * 66.67555 * 1 2 3 26 26 H 1.09002 * 109.47610 * 186.67765 * 1 2 3 27 27 H 1.08998 * 109.47529 * 179.97438 * 3 2 1 28 28 H 1.09009 * 109.47247 * 299.99799 * 3 2 1 29 29 H 1.09004 * 109.47395 * 59.99666 * 3 2 1 30 30 H 1.09004 * 109.46937 * 299.99628 * 4 2 1 31 31 H 1.08993 * 109.47342 * 59.99995 * 4 2 1 32 32 H 1.09003 * 109.47356 * 180.02562 * 4 2 1 33 33 H 1.08998 * 110.48756 * 98.40460 * 7 5 2 34 34 H 1.09000 * 110.48095 * 335.76056 * 7 5 2 35 35 H 1.08997 * 109.47491 * 330.02796 * 11 10 8 36 36 H 1.09000 * 109.46796 * 210.02523 * 11 10 8 37 37 H 1.09000 * 109.46513 * 299.99712 * 12 11 10 38 38 H 1.08997 * 109.47124 * 59.99608 * 12 11 10 39 39 H 1.09000 * 109.46520 * 299.99472 * 13 12 11 40 40 H 1.08998 * 109.47183 * 59.99382 * 13 12 11 41 41 H 1.09001 * 109.47335 * 299.99624 * 14 13 12 42 42 H 1.08997 * 109.47220 * 59.99419 * 14 13 12 43 43 H 0.97001 * 119.99781 * 179.97438 * 18 17 15 44 44 H 1.09000 * 110.24284 * 101.71711 * 23 10 8 45 45 H 1.08997 * 110.24297 * 223.71538 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2493 6 1 3.1282 -0.6867 1.3009 7 6 1.5299 -2.1804 1.2929 8 6 1.2559 -2.4340 2.7589 9 8 1.1099 -3.5292 3.2588 10 7 1.1976 -1.2688 3.4266 11 6 0.9561 -1.1527 4.8669 12 6 2.2923 -1.1800 5.6118 13 6 2.0401 -1.0593 7.1161 14 6 3.3762 -1.0873 7.8610 15 6 3.1278 -0.9679 9.3426 16 1 2.1180 -0.8811 9.7156 17 6 4.1897 -0.9703 10.2220 18 7 5.4194 -1.0764 9.7678 19 14 3.8818 -0.8230 12.0585 20 1 2.4219 -0.7179 12.3088 21 1 4.4166 -2.0246 12.7480 22 1 4.5623 0.3901 12.5788 23 6 1.4005 -0.1276 2.5263 24 1 -0.3634 0.6139 0.8242 25 1 -0.3634 0.4069 -0.9437 26 1 -0.3634 -1.0207 0.1195 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2491 33 1 2.2953 -2.8632 0.9241 34 1 0.6141 -2.2818 0.7105 35 1 0.3373 -1.9859 5.1999 36 1 0.4434 -0.2135 5.0747 37 1 2.8049 -2.1191 5.4039 38 1 2.9110 -0.3467 5.2788 39 1 1.5272 -0.1204 7.3242 40 1 1.4214 -1.8928 7.4487 41 1 3.8887 -2.0264 7.6527 42 1 3.9951 -0.2541 7.5283 43 1 6.1665 -1.0778 10.3865 44 1 0.4451 0.3410 2.2902 45 1 2.0747 0.5973 2.9823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385187046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:32 Heat of formation + Delta-G solvation = -70.670126 kcal Electronic energy + Delta-G solvation = -20652.562222 eV Core-core repulsion = 17668.627150 eV Total energy + Delta-G solvation = -2983.935072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83553 -37.99812 -36.00115 -34.53957 -32.68831 -31.03806 -28.61284 -27.98440 -27.70707 -26.72524 -24.91201 -22.79132 -21.99491 -20.06709 -19.24543 -18.77179 -16.84080 -16.52608 -16.17730 -15.41760 -14.66977 -14.57405 -14.47797 -14.31841 -14.25214 -13.89107 -13.46595 -13.06068 -12.69339 -12.49283 -12.29937 -12.25119 -11.98367 -11.88337 -11.81201 -11.63759 -11.59138 -11.02066 -10.98044 -10.80664 -10.71663 -10.53957 -10.48756 -10.47651 -9.68259 -9.62373 -9.37001 -9.05316 -8.47644 -8.31490 -5.96269 -3.98446 2.67249 3.10470 3.33203 3.40429 3.44908 4.13269 4.14169 4.31408 4.49072 4.62210 4.75279 4.89295 4.89466 5.18146 5.21391 5.29575 5.31580 5.34891 5.38515 5.39530 5.45816 5.52341 5.59441 5.63054 5.66637 5.72969 5.78396 5.78905 5.90251 6.01043 6.04936 6.09281 6.15147 6.49931 6.66737 6.79556 6.95054 7.18936 7.24459 7.72547 7.87801 8.04613 8.27657 8.47264 9.09182 9.65414 11.15172 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033999 B = 0.003116 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.355566 B = 8985.082534 C = 9260.216414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.091 4.091 6 H 0.093 0.907 7 C -0.154 4.154 8 C 0.513 3.487 9 O -0.534 6.534 10 N -0.616 5.616 11 C 0.124 3.876 12 C -0.132 4.132 13 C -0.108 4.108 14 C 0.021 3.979 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.100 3.900 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.077 0.923 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 4.922 -23.977 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.058 4.058 3 C -0.201 4.201 4 C -0.200 4.200 5 C -0.110 4.110 6 H 0.111 0.889 7 C -0.194 4.194 8 C 0.300 3.700 9 O -0.411 6.411 10 N -0.349 5.349 11 C 0.003 3.997 12 C -0.170 4.170 13 C -0.146 4.146 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.023 4.023 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.908 4.348 -23.564 25.564 hybrid contribution 0.066 0.178 1.099 1.115 sum -8.842 4.526 -22.465 24.563 Atomic orbital electron populations 1.22092 0.94505 1.02212 1.02014 1.20459 0.95695 0.95558 0.94086 1.21901 1.01304 0.94880 1.02031 1.21892 1.01250 1.00386 0.96481 1.22261 1.00997 0.93825 0.93883 0.88916 1.22533 1.03997 0.97797 0.95065 1.20878 0.76023 0.83942 0.89130 1.90731 1.50671 1.25296 1.74379 1.48412 1.71080 1.06969 1.08472 1.21598 0.98606 1.02497 0.77012 1.22014 0.95930 1.01988 0.97109 1.21569 1.01187 1.00198 0.91624 1.19087 0.91037 0.97141 0.94312 1.21323 0.92788 1.49689 0.91924 0.92655 1.25041 0.95205 0.95437 0.98913 1.69984 0.98194 1.50905 1.34500 0.86545 0.78297 0.77595 0.85624 1.19740 1.21025 1.21045 1.22341 1.01073 0.89345 0.89534 0.92023 0.92379 0.92200 0.92341 0.92478 0.92292 0.92338 0.92503 0.92409 0.88326 0.87634 0.90203 0.90651 0.92146 0.92415 0.93365 0.93241 0.96666 0.96742 0.93115 0.90551 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 7.79 37.15 0.29 -0.60 16 2 C -0.06 -0.35 0.58 -154.51 -0.09 -0.44 16 3 C -0.14 -0.82 8.33 37.16 0.31 -0.51 16 4 C -0.14 -0.80 8.26 37.16 0.31 -0.49 16 5 C -0.09 -0.72 2.53 -88.89 -0.22 -0.95 16 6 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.15 -1.49 5.19 -26.74 -0.14 -1.62 16 8 C 0.51 7.47 8.02 -10.86 -0.09 7.39 16 9 O -0.53 -10.27 17.59 5.56 0.10 -10.17 16 10 N -0.62 -8.13 2.93 -172.31 -0.51 -8.63 16 11 C 0.12 1.83 5.93 -4.04 -0.02 1.81 16 12 C -0.13 -2.36 5.54 -26.73 -0.15 -2.51 16 13 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 19 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.10 0.94 5.92 -3.03 -0.02 0.92 16 24 H 0.06 0.37 6.20 -51.93 -0.32 0.05 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.38 5.92 -51.93 -0.31 0.07 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.06 0.34 7.53 -51.93 -0.39 -0.05 16 30 H 0.06 0.33 7.21 -51.93 -0.37 -0.05 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 0.87 5.60 -51.93 -0.29 0.58 16 35 H 0.08 1.27 7.92 -51.93 -0.41 0.86 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.08 0.61 5.53 -51.93 -0.29 0.32 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -33.70 351.53 -8.17 -41.87 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -8.27 Total: -5.65 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.51 Total: -12.92 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.23 Total: -35.53 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.10 Total: -10.17 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.70 -8.17 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.798 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds