Wall clock time and date at job start Mon Mar 30 2020 07:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47422 * 2 1 4 4 C 1.53002 * 109.47150 * 240.00034 * 2 1 3 5 5 C 1.53002 * 109.47033 * 119.99844 * 2 1 3 6 6 H 1.09005 * 110.88380 * 183.13626 * 5 2 1 7 7 C 1.54631 * 110.97055 * 59.32687 * 5 2 1 8 8 C 1.51282 * 104.19550 * 217.08387 * 7 5 2 9 9 O 1.21275 * 124.93781 * 196.22844 * 8 7 5 10 10 N 1.34422 * 110.11368 * 16.24918 * 8 7 5 11 11 C 1.46499 * 124.34554 * 180.40603 * 10 8 7 12 12 C 1.53005 * 109.47022 * 90.02962 * 11 10 8 13 13 C 1.52999 * 109.47152 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.46944 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47026 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00133 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00143 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99897 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00153 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47198 * 120.00368 * 19 17 15 22 22 H 1.48505 * 109.47176 * 240.00160 * 19 17 15 23 23 C 1.46763 * 111.30121 * 0.67516 * 10 8 7 24 24 H 1.09003 * 109.47398 * 306.68143 * 1 2 3 25 25 H 1.09002 * 109.47272 * 66.67555 * 1 2 3 26 26 H 1.09002 * 109.47610 * 186.67765 * 1 2 3 27 27 H 1.08998 * 109.47529 * 179.97438 * 3 2 1 28 28 H 1.09009 * 109.47247 * 299.99799 * 3 2 1 29 29 H 1.09004 * 109.47395 * 59.99666 * 3 2 1 30 30 H 1.09004 * 109.46937 * 299.99628 * 4 2 1 31 31 H 1.08993 * 109.47342 * 59.99995 * 4 2 1 32 32 H 1.09003 * 109.47356 * 180.02562 * 4 2 1 33 33 H 1.08998 * 110.48756 * 98.40460 * 7 5 2 34 34 H 1.09000 * 110.48095 * 335.76056 * 7 5 2 35 35 H 1.08997 * 109.47491 * 330.02796 * 11 10 8 36 36 H 1.09000 * 109.46796 * 210.02523 * 11 10 8 37 37 H 1.09000 * 109.46513 * 299.99712 * 12 11 10 38 38 H 1.08997 * 109.47124 * 59.99608 * 12 11 10 39 39 H 1.09000 * 109.46520 * 299.99472 * 13 12 11 40 40 H 1.08998 * 109.47183 * 59.99382 * 13 12 11 41 41 H 1.09001 * 109.47335 * 299.99624 * 14 13 12 42 42 H 1.08997 * 109.47220 * 59.99419 * 14 13 12 43 43 H 0.97001 * 119.99781 * 179.97438 * 18 17 15 44 44 H 1.09000 * 110.24284 * 101.71711 * 23 10 8 45 45 H 1.08997 * 110.24297 * 223.71538 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2493 6 1 3.1282 -0.6867 1.3009 7 6 1.5299 -2.1804 1.2929 8 6 1.2559 -2.4340 2.7589 9 8 1.1099 -3.5292 3.2588 10 7 1.1976 -1.2688 3.4266 11 6 0.9561 -1.1527 4.8669 12 6 2.2923 -1.1800 5.6118 13 6 2.0401 -1.0593 7.1161 14 6 3.3762 -1.0873 7.8610 15 6 3.1278 -0.9679 9.3426 16 1 2.1180 -0.8811 9.7156 17 6 4.1897 -0.9703 10.2220 18 7 5.4194 -1.0764 9.7678 19 14 3.8818 -0.8230 12.0585 20 1 2.4219 -0.7179 12.3088 21 1 4.4166 -2.0246 12.7480 22 1 4.5623 0.3901 12.5788 23 6 1.4005 -0.1276 2.5263 24 1 -0.3634 0.6139 0.8242 25 1 -0.3634 0.4069 -0.9437 26 1 -0.3634 -1.0207 0.1195 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2491 33 1 2.2953 -2.8632 0.9241 34 1 0.6141 -2.2818 0.7105 35 1 0.3373 -1.9859 5.1999 36 1 0.4434 -0.2135 5.0747 37 1 2.8049 -2.1191 5.4039 38 1 2.9110 -0.3467 5.2788 39 1 1.5272 -0.1204 7.3242 40 1 1.4214 -1.8928 7.4487 41 1 3.8887 -2.0264 7.6527 42 1 3.9951 -0.2541 7.5283 43 1 6.1665 -1.0778 10.3865 44 1 0.4451 0.3410 2.2902 45 1 2.0747 0.5973 2.9823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385187046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:31 Heat of formation + Delta-G solvation = -90.084345 kcal Electronic energy + Delta-G solvation = -20653.404085 eV Core-core repulsion = 17668.627150 eV Total energy + Delta-G solvation = -2984.776935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76108 -38.85252 -37.34837 -36.05935 -34.51208 -32.38155 -29.89621 -28.97566 -28.14851 -27.37233 -26.65249 -23.97343 -23.27269 -21.87898 -20.35034 -19.35219 -18.47390 -17.76214 -17.49007 -16.54108 -16.50181 -15.89586 -15.28436 -15.24341 -15.05260 -14.87222 -14.50693 -14.21502 -13.97853 -13.87553 -13.60264 -13.41816 -12.97424 -12.88324 -12.71536 -12.50419 -12.46454 -12.35848 -12.31678 -12.26682 -12.11603 -11.57692 -11.46515 -11.43762 -11.32953 -11.26628 -11.15949 -10.76087 -10.58404 -9.65144 -8.21919 -6.33798 1.38338 1.39431 1.52833 1.54681 2.07319 2.39824 3.10832 3.35537 3.45080 3.70369 3.95202 4.03968 4.08680 4.18688 4.24575 4.34374 4.38479 4.49871 4.58211 4.66282 4.67726 4.74470 4.78343 4.85927 4.91361 4.96034 5.04448 5.07481 5.12902 5.18234 5.18999 5.22118 5.24402 5.31488 5.46202 5.50565 5.56523 5.60130 5.63567 5.72194 5.83342 6.18322 6.22536 6.83679 7.15273 7.35796 8.90343 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033999 B = 0.003116 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.355566 B = 8985.082534 C = 9260.216414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.050 4.050 3 C -0.144 4.144 4 C -0.144 4.144 5 C -0.082 4.082 6 H 0.092 0.908 7 C -0.143 4.143 8 C 0.498 3.502 9 O -0.592 6.592 10 N -0.616 5.616 11 C 0.130 3.870 12 C -0.119 4.119 13 C -0.095 4.095 14 C 0.024 3.976 15 C -0.544 4.544 16 H 0.062 0.938 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.260 1.260 21 H -0.280 1.280 22 H -0.275 1.275 23 C 0.095 3.905 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.046 0.954 41 H -0.020 1.020 42 H -0.006 1.006 43 H 0.264 0.736 44 H 0.098 0.902 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.257 6.588 -24.704 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.051 4.051 3 C -0.201 4.201 4 C -0.201 4.201 5 C -0.101 4.101 6 H 0.110 0.890 7 C -0.183 4.183 8 C 0.288 3.712 9 O -0.473 6.473 10 N -0.348 5.348 11 C 0.008 3.992 12 C -0.158 4.158 13 C -0.133 4.133 14 C -0.014 4.014 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.200 1.200 23 C -0.026 4.026 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.064 0.936 41 H -0.001 1.001 42 H 0.012 0.988 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.187 6.055 -24.322 27.056 hybrid contribution 0.504 -0.326 1.294 1.426 sum -9.683 5.729 -23.029 25.630 Atomic orbital electron populations 1.22102 0.94104 1.02039 1.02644 1.20411 0.95901 0.95631 0.93108 1.21904 1.01227 0.94473 1.02516 1.21902 1.01242 1.00427 0.96507 1.22275 1.00929 0.92609 0.94279 0.88976 1.22537 1.05109 0.99063 0.91552 1.21771 0.74922 0.83330 0.91191 1.90691 1.53266 1.27443 1.75896 1.48541 1.70095 1.08044 1.08130 1.21401 0.96350 1.03493 0.77947 1.21825 0.97807 1.00663 0.95461 1.21369 0.97917 1.00967 0.93074 1.19011 0.93397 0.94366 0.94587 1.21764 0.93298 1.49904 0.93202 0.91966 1.26055 0.94821 0.94731 1.04565 1.70120 0.99298 1.51582 1.36590 0.85348 0.78841 0.77840 0.78712 1.18407 1.20531 1.20034 1.22641 1.02569 0.88159 0.89275 0.91920 0.91389 0.92614 0.92533 0.91645 0.92201 0.92365 0.91630 0.92505 0.87805 0.85792 0.91685 0.87549 0.95052 0.91721 0.91533 0.93561 1.00130 0.98792 0.92760 0.88387 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 7.79 71.98 0.56 -0.80 16 2 C -0.05 -0.48 0.58 -52.18 -0.03 -0.51 16 3 C -0.14 -1.25 8.33 71.98 0.60 -0.65 16 4 C -0.14 -1.25 8.26 71.98 0.59 -0.66 16 5 C -0.08 -1.14 2.53 -9.67 -0.02 -1.17 16 6 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 7 C -0.14 -2.58 5.19 30.59 0.16 -2.42 16 8 C 0.50 14.53 8.02 87.90 0.70 15.24 16 9 O -0.59 -23.61 17.59 -3.01 -0.05 -23.67 16 10 N -0.62 -15.71 2.93 -817.64 -2.40 -18.11 16 11 C 0.13 3.74 5.93 86.38 0.51 4.25 16 12 C -0.12 -4.30 5.54 30.60 0.17 -4.13 16 13 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 14 C 0.02 1.30 4.97 29.85 0.15 1.45 16 15 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 16 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 18 N -0.94 -58.73 13.29 21.45 0.28 -58.45 16 19 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.09 1.57 5.92 86.89 0.51 2.08 16 24 H 0.06 0.55 6.20 -2.39 -0.01 0.54 16 25 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.55 5.92 -2.39 -0.01 0.54 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.06 0.52 7.53 -2.38 -0.02 0.50 16 30 H 0.06 0.52 7.21 -2.38 -0.02 0.50 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.12 1.80 5.60 -2.39 -0.01 1.79 16 35 H 0.06 2.08 7.92 -2.39 -0.02 2.06 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.10 1.25 5.53 -2.39 -0.01 1.24 16 45 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -74.97 351.53 5.55 -69.42 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.93 Total: 6.29 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 4.76 Total: -22.83 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -2.11 Total: -76.55 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.67 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -74.97 5.55 -69.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.663 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds