Wall clock time and date at job start Mon Mar 30 2020 07:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47230 * 2 1 4 4 C 1.52998 * 109.47103 * 119.99694 * 2 1 3 5 5 C 1.53001 * 109.47124 * 175.00008 * 4 2 1 6 6 H 1.08997 * 115.56070 * 29.31155 * 5 4 2 7 7 C 1.53001 * 117.50087 * 243.62364 * 5 4 2 8 8 C 1.52994 * 60.00181 * 252.51107 * 7 5 4 9 9 H 1.09004 * 117.49999 * 252.48890 * 8 7 5 10 10 C 1.50698 * 117.50087 * 107.48972 * 8 7 5 11 11 O 1.21280 * 119.99955 * 291.38790 * 10 8 7 12 12 N 1.34771 * 120.00324 * 111.39484 * 10 8 7 13 13 C 1.46495 * 120.00330 * 180.02562 * 12 10 8 14 14 C 1.50702 * 109.47571 * 89.99769 * 13 12 10 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.46498 * 119.99856 * 359.97438 * 12 10 8 23 23 C 1.53001 * 109.47455 * 120.00297 * 22 12 10 24 24 C 1.53004 * 109.47383 * 240.00517 * 22 12 10 25 25 H 1.09000 * 109.47297 * 300.00296 * 1 2 3 26 26 H 1.09006 * 109.47401 * 59.99952 * 1 2 3 27 27 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47297 * 239.99704 * 2 1 3 29 29 H 1.09001 * 109.46845 * 299.99586 * 3 2 1 30 30 H 1.08990 * 109.47189 * 59.99652 * 3 2 1 31 31 H 1.09002 * 109.47452 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47286 * 55.00304 * 4 2 1 33 33 H 1.08998 * 109.47126 * 294.99911 * 4 2 1 34 34 H 1.09003 * 117.50077 * 145.01538 * 7 5 4 35 35 H 1.09008 * 117.49709 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.47378 * 329.99429 * 13 12 10 37 37 H 1.09001 * 109.47153 * 209.99549 * 13 12 10 38 38 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 39 39 H 1.09002 * 109.47284 * 0.02562 * 22 12 10 40 40 H 1.09001 * 109.47163 * 59.99588 * 23 22 12 41 41 H 1.08995 * 109.47777 * 180.02562 * 23 22 12 42 42 H 1.09005 * 109.47104 * 300.00242 * 23 22 12 43 43 H 1.08993 * 109.47253 * 60.00132 * 24 22 12 44 44 H 1.08999 * 109.46744 * 180.02562 * 24 22 12 45 45 H 1.09002 * 109.46714 * 299.99460 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1880 6 1 4.0720 -0.0355 0.6421 7 6 4.1697 -2.2344 1.1154 8 6 4.2802 -1.4196 2.4056 9 1 5.2582 -1.0116 2.6611 10 6 3.4290 -1.8468 3.5735 11 8 2.2240 -1.7184 3.5248 12 7 4.0068 -2.3715 4.6723 13 6 3.1793 -2.7874 5.8074 14 6 2.7802 -4.2305 5.6362 15 1 3.1097 -4.7825 4.7684 16 6 1.9937 -4.8456 6.5869 17 7 1.6409 -6.1034 6.4348 18 14 1.4232 -3.8906 8.0876 19 1 2.4183 -4.0435 9.1792 20 1 1.2887 -2.4536 7.7381 21 1 0.1093 -4.4154 8.5384 22 6 5.4623 -2.5271 4.7310 23 6 6.0147 -1.7177 5.9061 24 6 5.8101 -4.0048 4.9213 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1582 2.1369 34 1 5.0748 -2.3623 0.5218 35 1 3.4812 -3.0796 1.1109 36 1 2.2849 -2.1659 5.8520 37 1 3.7466 -2.6745 6.7312 38 1 1.0843 -6.5351 7.1016 39 1 5.9041 -2.1662 3.8022 40 1 5.5730 -2.0781 6.8351 41 1 7.0977 -1.8330 5.9496 42 1 5.7670 -0.6649 5.7705 43 1 5.4167 -4.5814 4.0842 44 1 6.8930 -4.1204 4.9655 45 1 5.3684 -4.3653 5.8504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387746463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:11 Heat of formation + Delta-G solvation = -29.196131 kcal Electronic energy + Delta-G solvation = -21587.622654 eV Core-core repulsion = 18605.486030 eV Total energy + Delta-G solvation = -2982.136624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.78001 -37.41526 -35.79317 -34.78592 -32.68189 -30.95081 -28.44989 -27.18219 -26.93623 -26.72036 -24.04324 -21.94257 -21.36257 -20.66676 -19.67576 -17.70616 -16.99512 -16.79436 -15.25727 -15.19834 -14.63749 -14.30696 -13.87023 -13.72142 -13.53399 -13.26976 -12.84719 -12.59789 -12.47266 -12.36590 -12.18091 -11.95080 -11.71042 -11.65191 -11.49372 -11.43391 -10.95537 -10.88152 -10.84226 -10.67663 -10.46972 -10.43525 -10.31967 -10.06585 -9.79439 -9.60165 -9.39414 -8.69189 -8.54849 -7.62617 -6.04724 -4.01587 3.22056 3.28185 3.36850 3.41531 3.79197 4.19828 4.42900 4.72560 4.94752 5.06432 5.13931 5.16877 5.24231 5.27728 5.30936 5.43846 5.53991 5.56660 5.64652 5.70635 5.85514 5.87835 5.91891 5.99206 6.01570 6.10148 6.14691 6.20658 6.22235 6.29433 6.31987 6.34017 6.42467 6.57180 6.63963 6.79756 6.90488 7.02613 7.05911 7.45848 7.66846 8.37016 8.52865 8.99351 9.09927 9.56574 11.08597 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.005844 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.691786 B = 4790.457749 C = 5644.350399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.119 4.119 6 H 0.107 0.893 7 C -0.153 4.153 8 C -0.189 4.189 9 H 0.116 0.884 10 C 0.536 3.464 11 O -0.536 6.536 12 N -0.585 5.585 13 C 0.216 3.784 14 C -0.518 4.518 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.870 3.130 19 H -0.276 1.276 20 H -0.265 1.265 21 H -0.285 1.285 22 C 0.133 3.867 23 C -0.163 4.163 24 C -0.155 4.155 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.038 0.962 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.658 11.881 -9.583 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.138 4.138 6 H 0.125 0.875 7 C -0.191 4.191 8 C -0.211 4.211 9 H 0.133 0.867 10 C 0.323 3.677 11 O -0.413 6.413 12 N -0.316 5.316 13 C 0.095 3.905 14 C -0.557 4.557 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.698 3.302 19 H -0.202 1.202 20 H -0.189 1.189 21 H -0.211 1.211 22 C 0.029 3.971 23 C -0.221 4.221 24 C -0.213 4.213 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.901 11.793 -9.481 16.631 hybrid contribution -0.121 0.201 0.969 0.997 sum 6.780 11.995 -8.512 16.195 Atomic orbital electron populations 1.21804 0.95505 1.01796 1.01175 1.21182 0.95569 0.95995 0.98989 1.21883 1.00823 0.96431 1.01206 1.21275 0.91252 1.01755 0.96836 1.22437 0.96581 0.96240 0.98518 0.87548 1.23028 1.03116 0.95546 0.97370 1.22368 1.01219 1.07476 0.90001 0.86656 1.19413 0.87726 0.77792 0.82724 1.90654 1.14505 1.55625 1.80531 1.47949 1.06278 1.60232 1.17166 1.19603 0.90566 0.96633 0.83686 1.21340 1.31582 0.94152 1.08603 0.90596 1.24843 0.95500 0.94724 0.97994 1.69895 1.37109 1.11147 1.35652 0.86928 0.78664 0.81147 0.83511 1.20213 1.18917 1.21057 1.21046 0.81254 0.96452 0.98396 1.22186 1.00417 0.99812 0.99727 1.22118 0.99367 0.95204 1.04617 0.92683 0.93343 0.92649 0.91754 0.93404 0.92784 0.92774 0.91018 0.90208 0.88511 0.88206 0.94371 0.95745 0.92702 0.90238 0.91698 0.92100 0.92934 0.92451 0.93379 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.19 37.15 0.34 -1.40 16 2 C -0.10 -1.20 2.92 -90.62 -0.26 -1.46 16 3 C -0.15 -1.54 9.01 37.16 0.33 -1.21 16 4 C -0.07 -1.12 3.22 -26.73 -0.09 -1.21 16 5 C -0.12 -1.62 5.52 -90.62 -0.50 -2.12 16 6 H 0.11 1.19 6.38 -51.93 -0.33 0.86 16 7 C -0.15 -2.10 9.88 -26.73 -0.26 -2.36 16 8 C -0.19 -2.88 5.01 -91.77 -0.46 -3.34 16 9 H 0.12 1.47 6.64 -51.93 -0.34 1.13 16 10 C 0.54 10.95 7.44 -10.99 -0.08 10.87 16 11 O -0.54 -12.81 12.68 5.56 0.07 -12.74 16 12 N -0.59 -12.04 2.39 -167.47 -0.40 -12.44 16 13 C 0.22 5.25 3.66 -5.20 -0.02 5.23 16 14 C -0.52 -14.62 8.38 -34.44 -0.29 -14.91 16 15 H 0.08 2.35 7.87 -52.49 -0.41 1.94 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 18 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 C 0.13 2.16 3.16 -67.93 -0.21 1.94 16 23 C -0.16 -2.30 9.17 37.16 0.34 -1.96 16 24 C -0.16 -2.65 8.47 37.16 0.31 -2.33 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.53 6.41 -51.93 -0.33 0.20 16 32 H 0.07 1.28 7.30 -51.93 -0.38 0.90 16 33 H 0.08 1.40 6.92 -51.93 -0.36 1.04 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.57 8.03 -51.92 -0.42 1.16 16 36 H 0.04 1.02 6.48 -51.93 -0.34 0.68 16 37 H 0.02 0.57 5.86 -51.93 -0.30 0.26 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.08 1.10 5.43 -51.93 -0.28 0.81 16 40 H 0.06 1.01 6.66 -51.93 -0.35 0.67 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -31.86 346.51 -7.97 -39.83 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.02 Total: 2.34 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.94 Total: -12.28 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.37 Total: -39.33 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.86 -7.97 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387746463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.630 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds