Wall clock time and date at job start Mon Mar 30 2020 07:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47230 * 2 1 4 4 C 1.52998 * 109.47103 * 119.99694 * 2 1 3 5 5 C 1.53001 * 109.47124 * 175.00008 * 4 2 1 6 6 H 1.08997 * 115.56070 * 29.31155 * 5 4 2 7 7 C 1.53001 * 117.50087 * 243.62364 * 5 4 2 8 8 C 1.52994 * 60.00181 * 252.51107 * 7 5 4 9 9 H 1.09004 * 117.49999 * 252.48890 * 8 7 5 10 10 C 1.50698 * 117.50087 * 107.48972 * 8 7 5 11 11 O 1.21280 * 119.99955 * 291.38790 * 10 8 7 12 12 N 1.34771 * 120.00324 * 111.39484 * 10 8 7 13 13 C 1.46495 * 120.00330 * 180.02562 * 12 10 8 14 14 C 1.50702 * 109.47571 * 89.99769 * 13 12 10 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 C 1.46498 * 119.99856 * 359.97438 * 12 10 8 23 23 C 1.53001 * 109.47455 * 120.00297 * 22 12 10 24 24 C 1.53004 * 109.47383 * 240.00517 * 22 12 10 25 25 H 1.09000 * 109.47297 * 300.00296 * 1 2 3 26 26 H 1.09006 * 109.47401 * 59.99952 * 1 2 3 27 27 H 1.08998 * 109.47330 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47297 * 239.99704 * 2 1 3 29 29 H 1.09001 * 109.46845 * 299.99586 * 3 2 1 30 30 H 1.08990 * 109.47189 * 59.99652 * 3 2 1 31 31 H 1.09002 * 109.47452 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47286 * 55.00304 * 4 2 1 33 33 H 1.08998 * 109.47126 * 294.99911 * 4 2 1 34 34 H 1.09003 * 117.50077 * 145.01538 * 7 5 4 35 35 H 1.09008 * 117.49709 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.47378 * 329.99429 * 13 12 10 37 37 H 1.09001 * 109.47153 * 209.99549 * 13 12 10 38 38 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 39 39 H 1.09002 * 109.47284 * 0.02562 * 22 12 10 40 40 H 1.09001 * 109.47163 * 59.99588 * 23 22 12 41 41 H 1.08995 * 109.47777 * 180.02562 * 23 22 12 42 42 H 1.09005 * 109.47104 * 300.00242 * 23 22 12 43 43 H 1.08993 * 109.47253 * 60.00132 * 24 22 12 44 44 H 1.08999 * 109.46744 * 180.02562 * 24 22 12 45 45 H 1.09002 * 109.46714 * 299.99460 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1880 6 1 4.0720 -0.0355 0.6421 7 6 4.1697 -2.2344 1.1154 8 6 4.2802 -1.4196 2.4056 9 1 5.2582 -1.0116 2.6611 10 6 3.4290 -1.8468 3.5735 11 8 2.2240 -1.7184 3.5248 12 7 4.0068 -2.3715 4.6723 13 6 3.1793 -2.7874 5.8074 14 6 2.7802 -4.2305 5.6362 15 1 3.1097 -4.7825 4.7684 16 6 1.9937 -4.8456 6.5869 17 7 1.6409 -6.1034 6.4348 18 14 1.4232 -3.8906 8.0876 19 1 2.4183 -4.0435 9.1792 20 1 1.2887 -2.4536 7.7381 21 1 0.1093 -4.4154 8.5384 22 6 5.4623 -2.5271 4.7310 23 6 6.0147 -1.7177 5.9061 24 6 5.8101 -4.0048 4.9213 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1582 2.1369 34 1 5.0748 -2.3623 0.5218 35 1 3.4812 -3.0796 1.1109 36 1 2.2849 -2.1659 5.8520 37 1 3.7466 -2.6745 6.7312 38 1 1.0843 -6.5351 7.1016 39 1 5.9041 -2.1662 3.8022 40 1 5.5730 -2.0781 6.8351 41 1 7.0977 -1.8330 5.9496 42 1 5.7670 -0.6649 5.7705 43 1 5.4167 -4.5814 4.0842 44 1 6.8930 -4.1204 4.9655 45 1 5.3684 -4.3653 5.8504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387746463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:11 Heat of formation + Delta-G solvation = -47.876228 kcal Electronic energy + Delta-G solvation = -21588.432684 eV Core-core repulsion = 18605.486030 eV Total energy + Delta-G solvation = -2982.946654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24804 -38.71316 -37.28891 -35.91364 -34.83318 -32.56660 -30.31811 -28.33087 -27.98597 -27.91598 -25.71589 -23.60828 -22.61706 -21.98238 -20.75012 -19.22318 -19.05348 -18.32785 -16.87234 -16.45528 -16.21977 -15.60405 -15.46550 -15.14472 -14.86412 -14.58365 -14.36756 -14.04227 -13.84535 -13.72089 -13.54188 -13.29169 -13.18993 -12.93554 -12.89467 -12.66160 -12.50217 -12.41667 -12.19009 -11.97453 -11.93482 -11.75708 -11.65837 -11.53519 -11.46945 -10.95997 -10.80473 -10.75250 -10.27370 -9.34753 -8.32015 -6.33881 1.27969 1.32762 1.43054 1.73354 2.29387 2.30951 2.94720 3.01713 3.56881 3.74174 3.96258 3.99780 4.09546 4.15270 4.24308 4.28394 4.34666 4.46273 4.51067 4.69608 4.81281 4.83880 4.86405 4.87500 4.90328 4.95011 4.96576 5.02136 5.04717 5.09057 5.09393 5.13806 5.20197 5.31921 5.40041 5.42846 5.47947 5.58283 5.58962 5.68709 5.75989 6.28783 6.66355 6.80654 7.25304 7.51828 8.84876 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.005844 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.691786 B = 4790.457749 C = 5644.350399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.142 4.142 4 C -0.070 4.070 5 C -0.109 4.109 6 H 0.147 0.853 7 C -0.144 4.144 8 C -0.196 4.196 9 H 0.155 0.845 10 C 0.520 3.480 11 O -0.585 6.585 12 N -0.593 5.593 13 C 0.227 3.773 14 C -0.516 4.516 15 H 0.031 0.969 16 C 0.010 3.990 17 N -0.947 5.947 18 Si 0.939 3.061 19 H -0.252 1.252 20 H -0.260 1.260 21 H -0.283 1.283 22 C 0.126 3.874 23 C -0.158 4.158 24 C -0.149 4.149 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.029 0.971 33 H 0.048 0.952 34 H 0.140 0.860 35 H 0.066 0.934 36 H 0.012 0.988 37 H 0.043 0.957 38 H 0.266 0.734 39 H 0.116 0.884 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.090 0.910 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.456 14.542 -10.376 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.199 4.199 4 C -0.108 4.108 5 C -0.127 4.127 6 H 0.164 0.836 7 C -0.182 4.182 8 C -0.217 4.217 9 H 0.172 0.828 10 C 0.310 3.690 11 O -0.466 6.466 12 N -0.324 5.324 13 C 0.105 3.895 14 C -0.554 4.554 15 H 0.050 0.950 16 C -0.187 4.187 17 N -0.588 5.588 18 Si 0.763 3.237 19 H -0.176 1.176 20 H -0.184 1.184 21 H -0.209 1.209 22 C 0.023 3.977 23 C -0.215 4.215 24 C -0.207 4.207 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.157 0.843 35 H 0.084 0.916 36 H 0.030 0.970 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.062 0.938 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.108 0.892 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.749 14.461 -10.279 20.244 hybrid contribution -1.010 -0.713 1.134 1.678 sum 8.739 13.748 -9.145 18.681 Atomic orbital electron populations 1.21830 0.95897 1.01025 1.01724 1.21154 0.95354 0.97155 0.97574 1.21848 1.01710 0.94720 1.01619 1.21120 0.93037 0.99287 0.97313 1.22591 0.95231 0.97339 0.97517 0.83576 1.23107 1.04041 0.94449 0.96571 1.22384 1.02026 1.09026 0.88216 0.82792 1.20475 0.87885 0.76868 0.83767 1.90636 1.17006 1.57476 1.81494 1.48094 1.08074 1.59913 1.16279 1.19192 0.90714 0.93388 0.86220 1.21491 1.31175 0.95902 1.06876 0.95048 1.25767 0.95661 0.95661 1.01609 1.70048 1.38400 1.13086 1.37224 0.85830 0.78584 0.79537 0.79764 1.17620 1.18398 1.20887 1.21438 0.78619 0.96215 1.01378 1.22151 1.02411 0.99655 0.97318 1.22045 1.01642 0.95596 1.01392 0.93874 0.90987 0.94153 0.90409 0.91577 0.93809 0.91285 0.95184 0.93293 0.84253 0.91562 0.96963 0.93904 0.92509 0.86632 0.93787 0.88464 0.91942 0.95102 0.89169 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.19 71.98 0.66 -2.88 16 2 C -0.09 -2.17 2.92 -10.80 -0.03 -2.21 16 3 C -0.14 -2.61 9.01 71.98 0.65 -1.96 16 4 C -0.07 -2.18 3.22 30.59 0.10 -2.08 16 5 C -0.11 -2.70 5.52 -10.79 -0.06 -2.76 16 6 H 0.15 2.54 6.38 -2.39 -0.02 2.53 16 7 C -0.14 -3.66 9.88 30.59 0.30 -3.36 16 8 C -0.20 -5.54 5.01 -11.54 -0.06 -5.60 16 9 H 0.15 3.15 6.64 -2.38 -0.02 3.14 16 10 C 0.52 21.64 7.44 87.66 0.65 22.29 16 11 O -0.59 -29.70 12.68 -3.03 -0.04 -29.74 16 12 N -0.59 -24.62 2.39 -802.16 -1.91 -26.54 16 13 C 0.23 11.39 3.66 85.63 0.31 11.70 16 14 C -0.52 -30.65 8.38 25.60 0.21 -30.43 16 15 H 0.03 2.09 7.87 -2.91 -0.02 2.06 16 16 C 0.01 0.62 5.47 84.65 0.46 1.09 16 17 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 18 Si 0.94 45.70 27.47 68.60 1.88 47.58 16 19 H -0.25 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 21 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 22 C 0.13 3.83 3.16 44.99 0.14 3.97 16 23 C -0.16 -3.93 9.17 71.98 0.66 -3.27 16 24 C -0.15 -4.98 8.47 71.98 0.61 -4.37 16 25 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 1.06 6.41 -2.39 -0.02 1.05 16 32 H 0.03 1.15 7.30 -2.39 -0.02 1.13 16 33 H 0.05 1.81 6.92 -2.39 -0.02 1.80 16 34 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.07 2.15 8.03 -2.38 -0.02 2.13 16 36 H 0.01 0.68 6.48 -2.39 -0.02 0.66 16 37 H 0.04 1.99 5.86 -2.39 -0.01 1.98 16 38 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 39 H 0.12 2.70 5.43 -2.39 -0.01 2.69 16 40 H 0.04 1.28 6.66 -2.39 -0.02 1.26 16 41 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.04 1.70 6.92 -2.39 -0.02 1.68 16 Total: -1.00 -76.88 346.51 5.73 -71.15 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.88 Total: 17.93 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 4.62 Total: -19.86 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -1.62 Total: -87.06 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.04 Total: -29.74 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.58 kcal Total: -76.88 5.73 -71.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387746463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.274 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds