Wall clock time and date at job start Mon Mar 30 2020 07:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47100 * 2 1 4 4 C 1.52999 * 109.47528 * 120.00250 * 2 1 3 5 5 C 1.52996 * 109.47312 * 64.99561 * 4 2 1 6 6 H 1.09003 * 115.56301 * 330.69454 * 5 4 2 7 7 C 1.52998 * 117.49983 * 116.37772 * 5 4 2 8 8 C 1.52995 * 60.00104 * 107.49202 * 7 5 4 9 9 H 1.09006 * 117.51825 * 107.47935 * 8 7 5 10 10 C 1.50703 * 117.50186 * 252.51666 * 8 7 5 11 11 O 1.21275 * 120.00361 * 63.13608 * 10 8 7 12 12 N 1.34782 * 119.99433 * 243.13906 * 10 8 7 13 13 C 1.46500 * 120.00319 * 5.52922 * 12 10 8 14 14 C 1.50697 * 109.46989 * 270.00268 * 13 12 10 15 15 H 1.08004 * 119.99950 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99727 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00353 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99740 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47232 * 59.99630 * 18 16 14 20 20 H 1.48505 * 109.47179 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47056 * 299.99545 * 18 16 14 22 22 C 1.46501 * 119.99613 * 185.52737 * 12 10 8 23 23 C 1.53001 * 109.47195 * 55.66502 * 22 12 10 24 24 C 1.53003 * 109.47134 * 295.66851 * 22 12 10 25 25 H 1.08996 * 109.46777 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46761 * 299.99796 * 1 2 3 27 27 H 1.08993 * 109.47323 * 59.99614 * 1 2 3 28 28 H 1.09006 * 109.46761 * 240.00204 * 2 1 3 29 29 H 1.08998 * 109.47302 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46991 * 300.00191 * 3 2 1 31 31 H 1.08990 * 109.47319 * 60.00260 * 3 2 1 32 32 H 1.09001 * 109.46665 * 304.99657 * 4 2 1 33 33 H 1.08997 * 109.47136 * 185.00132 * 4 2 1 34 34 H 1.09003 * 117.49561 * 0.02562 * 7 5 4 35 35 H 1.08994 * 117.50170 * 214.98242 * 7 5 4 36 36 H 1.09007 * 109.46932 * 29.99839 * 13 12 10 37 37 H 1.09001 * 109.46937 * 149.99940 * 13 12 10 38 38 H 0.97004 * 120.00154 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.46923 * 175.66710 * 22 12 10 40 40 H 1.09004 * 109.46458 * 59.99823 * 23 22 12 41 41 H 1.08996 * 109.47077 * 179.97438 * 23 22 12 42 42 H 1.08994 * 109.47110 * 300.00437 * 23 22 12 43 43 H 1.08998 * 109.47162 * 65.10713 * 24 22 12 44 44 H 1.09004 * 109.46993 * 185.10847 * 24 22 12 45 45 H 1.09002 * 109.46886 * 305.10591 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.7162 -2.4086 0.6421 7 6 2.7569 -3.2336 1.1152 8 6 1.9519 -3.0662 2.4055 9 1 1.2408 -3.8518 2.6610 10 6 2.6385 -2.4060 3.5734 11 8 3.0082 -1.2542 3.4875 12 7 2.8417 -3.0958 4.7133 13 6 2.5061 -4.5204 4.7773 14 6 1.0783 -4.6802 5.2320 15 1 0.4808 -3.8078 5.4519 16 6 0.5352 -5.9401 5.3684 17 7 1.2629 -7.0023 5.1012 18 14 -1.2345 -6.1381 5.9328 19 1 -2.1398 -5.4593 4.9711 20 1 -1.5748 -7.5822 5.9975 21 1 -1.3960 -5.5303 7.2781 22 6 3.3983 -2.4209 5.8885 23 6 2.5284 -1.2132 6.2428 24 6 4.8216 -1.9514 5.5805 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6055 -0.2617 2.1369 33 1 3.1264 -0.6443 1.2950 34 1 3.7831 -2.8663 1.1115 35 1 2.5757 -4.1296 0.5217 36 1 2.6249 -4.9664 3.7897 37 1 3.1703 -5.0188 5.4833 38 1 0.8806 -7.8887 5.1968 39 1 3.4183 -3.1137 6.7297 40 1 1.5144 -1.5478 6.4621 41 1 2.9422 -0.7114 7.1173 42 1 2.5084 -0.5206 5.4014 43 1 4.7924 -1.1909 4.8002 44 1 5.2683 -1.5306 6.4814 45 1 5.4179 -2.7981 5.2407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387746464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:16 Heat of formation + Delta-G solvation = -38.528358 kcal Electronic energy + Delta-G solvation = -21707.745901 eV Core-core repulsion = 18725.204601 eV Total energy + Delta-G solvation = -2982.541300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.72233 -37.35467 -35.27623 -34.59453 -33.04151 -31.36001 -27.30233 -27.02697 -26.75412 -26.60725 -23.98160 -22.64515 -21.36135 -20.43988 -19.58599 -17.65595 -16.61238 -16.07357 -15.49261 -14.98827 -14.44765 -14.40110 -14.05749 -13.81902 -13.35989 -12.99080 -12.69415 -12.58346 -12.29433 -12.18096 -12.09644 -11.78910 -11.70045 -11.48561 -11.42500 -11.36623 -10.94980 -10.87082 -10.73031 -10.62879 -10.54297 -10.40337 -10.32036 -10.04897 -9.71394 -9.57956 -9.38584 -8.60271 -8.45904 -7.61453 -6.16121 -4.23627 3.24400 3.27845 3.29550 3.34487 3.96708 4.32742 4.42795 4.91527 5.12585 5.14440 5.16842 5.29800 5.46043 5.47203 5.56316 5.68776 5.74842 5.75200 5.84837 5.91194 5.94733 5.98719 6.05612 6.11194 6.15323 6.25027 6.28101 6.30507 6.36041 6.39667 6.47585 6.49380 6.63569 6.71426 6.81252 6.84156 6.90299 6.96540 7.24516 7.67400 7.79706 8.09460 8.45547 8.84052 9.15399 9.44502 10.90146 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015830 B = 0.006188 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.338927 B = 4523.702032 C = 5431.257637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.067 4.067 5 C -0.126 4.126 6 H 0.105 0.895 7 C -0.156 4.156 8 C -0.175 4.175 9 H 0.135 0.865 10 C 0.549 3.451 11 O -0.566 6.566 12 N -0.590 5.590 13 C 0.239 3.761 14 C -0.535 4.535 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.892 5.892 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.149 3.851 23 C -0.165 4.165 24 C -0.163 4.163 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.033 0.967 38 H 0.265 0.735 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 9.670 -6.465 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.104 4.104 5 C -0.145 4.145 6 H 0.123 0.877 7 C -0.194 4.194 8 C -0.196 4.196 9 H 0.153 0.847 10 C 0.338 3.662 11 O -0.448 6.448 12 N -0.320 5.320 13 C 0.119 3.881 14 C -0.574 4.574 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.045 3.955 23 C -0.223 4.223 24 C -0.221 4.221 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.289 10.023 -6.467 12.146 hybrid contribution -1.117 -0.636 0.523 1.388 sum 1.173 9.386 -5.945 11.172 Atomic orbital electron populations 1.21885 0.95773 1.01716 1.01067 1.21201 0.95537 0.95926 0.99189 1.21796 1.00826 0.96355 1.01116 1.21190 1.01159 0.91596 0.96440 1.22413 0.99207 0.93108 0.99758 0.87698 1.22951 0.96676 1.00975 0.98778 1.22449 1.04457 1.04055 0.88609 0.84678 1.19456 0.78068 0.85427 0.83270 1.90509 1.53231 1.17986 1.83066 1.48248 1.60979 1.12542 1.10225 1.19419 0.95867 0.74468 0.98388 1.21488 0.97297 0.92433 1.46190 0.92188 1.24938 0.98021 0.95712 0.95124 1.69915 1.36621 0.98170 1.48317 0.86608 0.84721 0.77019 0.79440 1.20120 1.21171 1.20165 1.20800 0.92249 0.94173 0.88287 1.22155 0.99803 0.98716 1.01589 1.22188 0.96223 1.01830 1.01866 0.92486 0.92830 0.93495 0.91776 0.92918 0.93395 0.92806 0.90728 0.91332 0.89003 0.88616 0.94295 0.94916 0.92527 0.90069 0.92725 0.93106 0.90601 0.90921 0.92950 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.01 37.16 0.33 -1.39 16 2 C -0.10 -1.24 2.92 -90.62 -0.26 -1.51 16 3 C -0.14 -1.64 9.19 37.16 0.34 -1.29 16 4 C -0.07 -1.02 3.21 -26.73 -0.09 -1.10 16 5 C -0.13 -1.99 5.52 -90.62 -0.50 -2.49 16 6 H 0.11 1.51 6.38 -51.93 -0.33 1.18 16 7 C -0.16 -2.48 9.88 -26.73 -0.26 -2.74 16 8 C -0.17 -3.29 4.88 -91.77 -0.45 -3.74 16 9 H 0.14 2.83 6.76 -51.93 -0.35 2.48 16 10 C 0.55 11.23 6.82 -10.98 -0.07 11.15 16 11 O -0.57 -11.63 9.44 5.56 0.05 -11.58 16 12 N -0.59 -12.46 2.41 -167.47 -0.40 -12.86 16 13 C 0.24 5.71 4.73 -5.20 -0.02 5.69 16 14 C -0.54 -13.89 8.82 -34.44 -0.30 -14.19 16 15 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 18 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 22 C 0.15 2.80 3.27 -67.93 -0.22 2.58 16 23 C -0.16 -2.93 9.05 37.16 0.34 -2.59 16 24 C -0.16 -2.72 9.11 37.16 0.34 -2.38 16 25 H 0.06 0.67 6.41 -51.93 -0.33 0.34 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.30 7.09 -51.93 -0.37 0.93 16 33 H 0.07 1.13 7.17 -51.93 -0.37 0.76 16 34 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 35 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.04 0.97 6.81 -51.93 -0.35 0.62 16 37 H 0.03 0.83 7.96 -51.93 -0.41 0.41 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.08 1.54 7.83 -51.93 -0.41 1.14 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.44 6.05 -51.93 -0.31 1.13 16 43 H 0.07 1.30 6.45 -51.93 -0.33 0.97 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -26.83 350.48 -8.48 -35.31 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.19 Total: 4.53 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -0.93 Total: -12.40 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.33 Total: -36.71 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.05 Total: -11.58 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -26.83 -8.48 -35.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387746464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.218 kcal (2) G-P(sol) polarization free energy of solvation -26.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds