Wall clock time and date at job start Mon Mar 30 2020 07:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47273 * 2 1 4 4 C 1.53006 * 109.46929 * 119.99728 * 2 1 3 5 5 C 1.52991 * 109.47102 * 174.99796 * 4 2 1 6 6 H 1.09007 * 115.54854 * 330.67044 * 5 4 2 7 7 C 1.52998 * 117.51853 * 116.36941 * 5 4 2 8 8 C 1.53002 * 60.00121 * 107.48555 * 7 5 4 9 9 H 1.09000 * 117.52013 * 252.52858 * 8 7 5 10 10 C 1.50700 * 117.50158 * 107.49017 * 8 7 5 11 11 O 1.21283 * 119.99803 * 291.37985 * 10 8 7 12 12 N 1.34777 * 119.99675 * 111.65860 * 10 8 7 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 C 1.50709 * 109.47273 * 89.99834 * 13 12 10 15 15 H 1.07999 * 119.99476 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00210 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00400 * 179.97438 * 16 14 13 18 18 Si 1.86811 * 119.99937 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46951 * 89.99952 * 18 16 14 20 20 H 1.48501 * 109.46896 * 209.99905 * 18 16 14 21 21 H 1.48500 * 109.46904 * 329.99741 * 18 16 14 22 22 C 1.46496 * 120.00345 * 359.72090 * 12 10 8 23 23 C 1.52995 * 109.46961 * 120.00319 * 22 12 10 24 24 C 1.53000 * 109.47508 * 240.00649 * 22 12 10 25 25 H 1.09002 * 109.46740 * 300.00655 * 1 2 3 26 26 H 1.08999 * 109.46825 * 59.99727 * 1 2 3 27 27 H 1.08993 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47130 * 239.99664 * 2 1 3 29 29 H 1.08999 * 109.46897 * 299.99988 * 3 2 1 30 30 H 1.08999 * 109.47317 * 59.99779 * 3 2 1 31 31 H 1.08998 * 109.47566 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47045 * 54.99722 * 4 2 1 33 33 H 1.09003 * 109.46991 * 295.00232 * 4 2 1 34 34 H 1.08997 * 117.49715 * 359.97438 * 7 5 4 35 35 H 1.09000 * 117.50260 * 214.97156 * 7 5 4 36 36 H 1.09000 * 109.46889 * 209.99487 * 13 12 10 37 37 H 1.09001 * 109.47460 * 330.00097 * 13 12 10 38 38 H 0.97001 * 120.00447 * 180.02562 * 17 16 14 39 39 H 1.09008 * 109.47072 * 0.02562 * 22 12 10 40 40 H 1.08995 * 109.47292 * 60.00438 * 23 22 12 41 41 H 1.09002 * 109.47065 * 180.02562 * 23 22 12 42 42 H 1.09002 * 109.47409 * 299.99780 * 23 22 12 43 43 H 1.08995 * 109.47041 * 59.99471 * 24 22 12 44 44 H 1.08992 * 109.47373 * 180.02562 * 24 22 12 45 45 H 1.09008 * 109.46776 * 299.99963 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1881 6 1 3.9927 -0.8806 0.1867 7 6 4.3699 -0.1014 2.2651 8 6 4.2608 -1.6272 2.2939 9 1 3.6323 -2.0727 3.0649 10 6 5.4854 -2.4197 1.9153 11 8 5.8838 -2.4100 0.7699 12 7 6.1345 -3.1437 2.8486 13 6 7.3215 -3.9189 2.4793 14 6 8.5518 -3.0652 2.6486 15 1 8.4587 -2.0469 2.9961 16 6 9.7961 -3.5841 2.3599 17 7 10.8697 -2.8390 2.5071 18 14 9.9569 -5.3453 1.7581 19 1 9.8764 -5.3711 0.2756 20 1 11.2645 -5.8993 2.1926 21 1 8.8579 -6.1654 2.3280 22 6 5.6532 -3.1555 4.2322 23 6 5.2998 -4.5879 4.6370 24 6 6.7474 -2.6192 5.1574 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9562 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6054 -1.7198 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.8134 0.4576 3.0174 35 1 5.3276 0.3293 1.9725 36 1 7.3968 -4.7962 3.1218 37 1 7.2395 -4.2359 1.4396 38 1 11.7451 -3.2039 2.3037 39 1 4.7671 -2.5260 4.3140 40 1 6.1856 -5.2177 4.5552 41 1 4.9413 -4.5966 5.6664 42 1 4.5202 -4.9700 3.9779 43 1 6.9992 -1.5987 4.8689 44 1 6.3895 -2.6283 6.1869 45 1 7.6333 -3.2490 5.0755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387746467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:20 Heat of formation + Delta-G solvation = -34.808845 kcal Electronic energy + Delta-G solvation = -21214.330045 eV Core-core repulsion = 18231.950035 eV Total energy + Delta-G solvation = -2982.380010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.67967 -37.61269 -35.97966 -34.80087 -32.68644 -30.94821 -28.51669 -27.35808 -27.23578 -26.72369 -24.01316 -21.93387 -21.25533 -20.68098 -20.03078 -17.84263 -16.99014 -16.79514 -15.42230 -15.14556 -14.63916 -14.49058 -14.03359 -13.74570 -13.57072 -13.52227 -13.08746 -12.64896 -12.48634 -12.43472 -12.23762 -11.98100 -11.78512 -11.67441 -11.48475 -11.33535 -11.19469 -10.97622 -10.88530 -10.83219 -10.71118 -10.49808 -10.28984 -10.09354 -9.96402 -9.71571 -9.42650 -8.91279 -8.54581 -7.64934 -6.04812 -4.01887 3.19357 3.30769 3.36718 3.39120 3.74913 4.17650 4.42675 4.59769 4.80261 4.85127 5.04788 5.06350 5.15202 5.25557 5.28856 5.41857 5.47166 5.55815 5.58193 5.60629 5.63040 5.66462 5.73957 5.81774 5.87276 5.97470 5.99563 6.08940 6.13083 6.19401 6.23933 6.28961 6.30242 6.34524 6.49733 6.57603 6.82177 7.00742 7.03686 7.44132 7.66310 8.35392 8.52368 8.98796 9.07489 9.56266 11.08466 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.004598 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.740220 B = 6088.779262 C = 6493.281385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.083 4.083 5 C -0.121 4.121 6 H 0.116 0.884 7 C -0.148 4.148 8 C -0.186 4.186 9 H 0.117 0.883 10 C 0.536 3.464 11 O -0.543 6.543 12 N -0.584 5.584 13 C 0.215 3.785 14 C -0.520 4.520 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.873 3.127 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.133 3.867 23 C -0.163 4.163 24 C -0.155 4.155 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.031 0.969 37 H 0.033 0.967 38 H 0.263 0.737 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 3.378 2.352 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.120 4.120 5 C -0.139 4.139 6 H 0.134 0.866 7 C -0.186 4.186 8 C -0.208 4.208 9 H 0.135 0.865 10 C 0.323 3.677 11 O -0.421 6.421 12 N -0.315 5.315 13 C 0.094 3.906 14 C -0.558 4.558 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.191 1.191 22 C 0.029 3.971 23 C -0.221 4.221 24 C -0.213 4.213 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.723 3.351 1.738 19.100 hybrid contribution 0.391 -0.947 -0.138 1.034 sum -18.332 2.405 1.600 18.558 Atomic orbital electron populations 1.21846 0.95524 1.01543 1.01525 1.21109 0.95177 0.96638 0.98446 1.21844 1.01798 0.95622 1.01139 1.21260 0.92551 1.00340 0.97864 1.22376 0.93710 1.02033 0.95792 0.86624 1.23036 1.02493 0.91624 1.01441 1.22388 0.99681 0.94868 1.03828 0.86536 1.19433 0.83439 0.79589 0.85242 1.90651 1.67876 1.63747 1.19834 1.47916 1.28736 1.47266 1.07592 1.19618 0.83126 0.91607 0.96213 1.21348 0.89127 1.00564 1.44803 0.90561 1.24846 0.95742 0.97467 0.95002 1.69892 0.98237 1.36424 1.49222 0.86907 0.77587 0.85591 0.79949 1.20004 1.21157 1.19132 1.21049 0.97082 0.96430 0.82531 1.22185 1.01998 0.97303 1.00662 1.22120 0.99820 1.02597 0.96789 0.92852 0.92855 0.92814 0.91031 0.93196 0.92946 0.92008 0.91637 0.91808 0.88394 0.88285 0.95161 0.94858 0.92676 0.90194 0.91664 0.92066 0.92923 0.92436 0.93334 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.19 37.16 0.34 -0.84 16 2 C -0.10 -0.91 2.88 -90.62 -0.26 -1.18 16 3 C -0.15 -1.38 9.01 37.15 0.33 -1.04 16 4 C -0.08 -0.86 4.96 -26.73 -0.13 -0.99 16 5 C -0.12 -1.64 4.24 -90.62 -0.38 -2.02 16 6 H 0.12 1.84 7.60 -51.92 -0.39 1.45 16 7 C -0.15 -2.02 9.88 -26.73 -0.26 -2.29 16 8 C -0.19 -2.86 4.73 -91.77 -0.43 -3.29 16 9 H 0.12 1.50 6.64 -51.93 -0.34 1.16 16 10 C 0.54 11.26 7.46 -10.98 -0.08 11.17 16 11 O -0.54 -13.74 15.84 5.55 0.09 -13.65 16 12 N -0.58 -12.21 2.39 -167.47 -0.40 -12.61 16 13 C 0.21 5.30 3.66 -5.19 -0.02 5.28 16 14 C -0.52 -14.82 8.38 -34.44 -0.29 -15.11 16 15 H 0.08 2.38 7.87 -52.49 -0.41 1.97 16 16 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 18 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 22 C 0.13 2.18 3.16 -67.94 -0.21 1.96 16 23 C -0.16 -2.32 9.17 37.16 0.34 -1.98 16 24 C -0.16 -2.65 8.47 37.16 0.31 -2.34 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.65 7.38 -51.93 -0.38 0.26 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 34 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 35 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.03 0.72 5.48 -51.93 -0.28 0.43 16 37 H 0.03 0.89 6.85 -51.93 -0.36 0.54 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.08 1.10 5.43 -51.92 -0.28 0.82 16 40 H 0.06 1.03 6.66 -51.93 -0.35 0.68 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.60 6.92 -51.92 -0.36 1.24 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -32.75 353.84 -7.95 -40.70 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.23 Total: 0.78 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.84 Total: -10.68 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.37 Total: -39.60 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.75 -7.95 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387746467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.893 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds