Wall clock time and date at job start Mon Mar 30 2020 07:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47273 * 2 1 4 4 C 1.53006 * 109.46929 * 119.99728 * 2 1 3 5 5 C 1.52991 * 109.47102 * 174.99796 * 4 2 1 6 6 H 1.09007 * 115.54854 * 330.67044 * 5 4 2 7 7 C 1.52998 * 117.51853 * 116.36941 * 5 4 2 8 8 C 1.53002 * 60.00121 * 107.48555 * 7 5 4 9 9 H 1.09000 * 117.52013 * 252.52858 * 8 7 5 10 10 C 1.50700 * 117.50158 * 107.49017 * 8 7 5 11 11 O 1.21283 * 119.99803 * 291.37985 * 10 8 7 12 12 N 1.34777 * 119.99675 * 111.65860 * 10 8 7 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 C 1.50709 * 109.47273 * 89.99834 * 13 12 10 15 15 H 1.07999 * 119.99476 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00210 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00400 * 179.97438 * 16 14 13 18 18 Si 1.86811 * 119.99937 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46951 * 89.99952 * 18 16 14 20 20 H 1.48501 * 109.46896 * 209.99905 * 18 16 14 21 21 H 1.48500 * 109.46904 * 329.99741 * 18 16 14 22 22 C 1.46496 * 120.00345 * 359.72090 * 12 10 8 23 23 C 1.52995 * 109.46961 * 120.00319 * 22 12 10 24 24 C 1.53000 * 109.47508 * 240.00649 * 22 12 10 25 25 H 1.09002 * 109.46740 * 300.00655 * 1 2 3 26 26 H 1.08999 * 109.46825 * 59.99727 * 1 2 3 27 27 H 1.08993 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47130 * 239.99664 * 2 1 3 29 29 H 1.08999 * 109.46897 * 299.99988 * 3 2 1 30 30 H 1.08999 * 109.47317 * 59.99779 * 3 2 1 31 31 H 1.08998 * 109.47566 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47045 * 54.99722 * 4 2 1 33 33 H 1.09003 * 109.46991 * 295.00232 * 4 2 1 34 34 H 1.08997 * 117.49715 * 359.97438 * 7 5 4 35 35 H 1.09000 * 117.50260 * 214.97156 * 7 5 4 36 36 H 1.09000 * 109.46889 * 209.99487 * 13 12 10 37 37 H 1.09001 * 109.47460 * 330.00097 * 13 12 10 38 38 H 0.97001 * 120.00447 * 180.02562 * 17 16 14 39 39 H 1.09008 * 109.47072 * 0.02562 * 22 12 10 40 40 H 1.08995 * 109.47292 * 60.00438 * 23 22 12 41 41 H 1.09002 * 109.47065 * 180.02562 * 23 22 12 42 42 H 1.09002 * 109.47409 * 299.99780 * 23 22 12 43 43 H 1.08995 * 109.47041 * 59.99471 * 24 22 12 44 44 H 1.08992 * 109.47373 * 180.02562 * 24 22 12 45 45 H 1.09008 * 109.46776 * 299.99963 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1881 6 1 3.9927 -0.8806 0.1867 7 6 4.3699 -0.1014 2.2651 8 6 4.2608 -1.6272 2.2939 9 1 3.6323 -2.0727 3.0649 10 6 5.4854 -2.4197 1.9153 11 8 5.8838 -2.4100 0.7699 12 7 6.1345 -3.1437 2.8486 13 6 7.3215 -3.9189 2.4793 14 6 8.5518 -3.0652 2.6486 15 1 8.4587 -2.0469 2.9961 16 6 9.7961 -3.5841 2.3599 17 7 10.8697 -2.8390 2.5071 18 14 9.9569 -5.3453 1.7581 19 1 9.8764 -5.3711 0.2756 20 1 11.2645 -5.8993 2.1926 21 1 8.8579 -6.1654 2.3280 22 6 5.6532 -3.1555 4.2322 23 6 5.2998 -4.5879 4.6370 24 6 6.7474 -2.6192 5.1574 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9562 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6054 -1.7198 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.8134 0.4576 3.0174 35 1 5.3276 0.3293 1.9725 36 1 7.3968 -4.7962 3.1218 37 1 7.2395 -4.2359 1.4396 38 1 11.7451 -3.2039 2.3037 39 1 4.7671 -2.5260 4.3140 40 1 6.1856 -5.2177 4.5552 41 1 4.9413 -4.5966 5.6664 42 1 4.5202 -4.9700 3.9779 43 1 6.9992 -1.5987 4.8689 44 1 6.3895 -2.6283 6.1869 45 1 7.6333 -3.2490 5.0755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387746467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:20 Heat of formation + Delta-G solvation = -54.176869 kcal Electronic energy + Delta-G solvation = -21215.169906 eV Core-core repulsion = 18231.950035 eV Total energy + Delta-G solvation = -2983.219870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18600 -38.77460 -37.50863 -35.82824 -34.84287 -32.58945 -30.34354 -28.39255 -27.97533 -27.92480 -25.68254 -23.62880 -22.55178 -21.85923 -20.88313 -19.34250 -19.08170 -18.39009 -17.02525 -16.38161 -16.02495 -15.91019 -15.33134 -15.18274 -14.88637 -14.61730 -14.54962 -14.11956 -13.89543 -13.64646 -13.48380 -13.34562 -12.99892 -12.88605 -12.78615 -12.65351 -12.40750 -12.35371 -12.30581 -12.08187 -11.93259 -11.78434 -11.72623 -11.55892 -11.45465 -11.04698 -10.83059 -10.78028 -10.57681 -9.40980 -8.32744 -6.35181 1.29039 1.33223 1.41134 1.66047 2.24076 2.29778 2.93485 3.00972 3.52785 3.76280 3.85718 3.97416 4.10115 4.16289 4.21043 4.29622 4.31678 4.43713 4.61277 4.68710 4.77787 4.85798 4.86614 4.88677 4.89791 4.90173 4.93136 5.01179 5.03728 5.06790 5.09041 5.13160 5.24080 5.35301 5.39815 5.44180 5.46453 5.52527 5.58114 5.58749 5.71333 6.26958 6.64975 6.75136 7.23325 7.44400 8.84045 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.004598 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.740220 B = 6088.779262 C = 6493.281385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.111 4.111 6 H 0.081 0.919 7 C -0.139 4.139 8 C -0.191 4.191 9 H 0.156 0.844 10 C 0.521 3.479 11 O -0.602 6.602 12 N -0.590 5.590 13 C 0.225 3.775 14 C -0.520 4.520 15 H 0.032 0.968 16 C 0.011 3.989 17 N -0.946 5.946 18 Si 0.940 3.060 19 H -0.279 1.279 20 H -0.274 1.274 21 H -0.240 1.240 22 C 0.126 3.874 23 C -0.158 4.158 24 C -0.149 4.149 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.010 0.990 38 H 0.267 0.733 39 H 0.117 0.883 40 H 0.043 0.957 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.091 0.909 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.527 2.476 4.128 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.130 4.130 6 H 0.100 0.900 7 C -0.176 4.176 8 C -0.211 4.211 9 H 0.173 0.827 10 C 0.311 3.689 11 O -0.484 6.484 12 N -0.320 5.320 13 C 0.103 3.897 14 C -0.558 4.558 15 H 0.050 0.950 16 C -0.187 4.187 17 N -0.586 5.586 18 Si 0.763 3.237 19 H -0.205 1.205 20 H -0.199 1.199 21 H -0.163 1.163 22 C 0.023 3.977 23 C -0.215 4.215 24 C -0.207 4.207 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.157 0.843 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.110 0.890 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.125 2.449 3.562 22.543 hybrid contribution 1.467 -0.542 -0.687 1.708 sum -20.658 1.908 2.875 20.944 Atomic orbital electron populations 1.21802 0.93824 1.02042 1.02315 1.21111 0.96530 0.96383 0.97543 1.21837 1.00561 0.95832 1.02102 1.21266 0.89436 1.01308 0.99096 1.22381 0.95911 1.00826 0.93843 0.90022 1.23124 1.01648 0.90493 1.02354 1.22382 0.97765 0.95063 1.05922 0.82699 1.20511 0.84736 0.79197 0.84443 1.90612 1.69871 1.65569 1.22335 1.48072 1.27481 1.46611 1.09825 1.19243 0.83298 0.91945 0.95227 1.21505 0.91152 0.99172 1.44006 0.94965 1.25776 0.95273 1.02446 0.95185 1.70041 0.98951 1.38838 1.50819 0.85827 0.78825 0.80105 0.78905 1.20501 1.19908 1.16347 1.21469 0.97718 0.98989 0.79490 1.22152 1.01420 0.94795 1.03169 1.22049 0.98919 1.00110 0.99634 0.91688 0.92483 0.92473 0.92740 0.92685 0.91594 0.93913 0.90869 0.89442 0.84287 0.91424 0.93371 0.97178 0.92432 0.86550 0.93780 0.88316 0.91922 0.95048 0.89020 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.10 -1.69 2.88 -10.79 -0.03 -1.72 16 3 C -0.15 -2.52 9.01 71.98 0.65 -1.87 16 4 C -0.07 -1.32 4.96 30.59 0.15 -1.16 16 5 C -0.11 -2.90 4.24 -10.80 -0.05 -2.95 16 6 H 0.08 2.73 7.60 -2.38 -0.02 2.71 16 7 C -0.14 -3.59 9.88 30.59 0.30 -3.29 16 8 C -0.19 -5.52 4.73 -11.54 -0.05 -5.58 16 9 H 0.16 3.27 6.64 -2.39 -0.02 3.25 16 10 C 0.52 22.26 7.46 87.66 0.65 22.91 16 11 O -0.60 -32.06 15.84 -3.04 -0.05 -32.11 16 12 N -0.59 -24.75 2.39 -802.14 -1.91 -26.66 16 13 C 0.23 11.34 3.66 85.64 0.31 11.65 16 14 C -0.52 -31.02 8.38 25.60 0.21 -30.81 16 15 H 0.03 2.15 7.87 -2.91 -0.02 2.12 16 16 C 0.01 0.65 5.47 84.65 0.46 1.11 16 17 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 18 Si 0.94 45.69 27.47 68.60 1.88 47.57 16 19 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 20 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 22 C 0.13 3.82 3.16 44.99 0.14 3.96 16 23 C -0.16 -3.92 9.17 71.98 0.66 -3.26 16 24 C -0.15 -4.97 8.47 71.98 0.61 -4.36 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.89 7.38 -2.39 -0.02 0.87 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.20 7.88 -2.39 -0.02 1.18 16 34 H 0.14 2.47 8.03 -2.39 -0.02 2.45 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 2.25 5.48 -2.39 -0.01 2.24 16 37 H 0.01 0.56 6.85 -2.39 -0.02 0.54 16 38 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 39 H 0.12 2.71 5.43 -2.38 -0.01 2.70 16 40 H 0.04 1.28 6.66 -2.39 -0.02 1.27 16 41 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.04 1.72 6.92 -2.38 -0.02 1.70 16 Total: -1.00 -77.84 353.84 5.79 -72.05 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.87 Total: 16.21 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 4.69 Total: -16.58 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -1.62 Total: -87.14 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.05 Total: -32.11 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.57 kcal Total: -77.84 5.79 -72.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387746467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.874 kcal (2) G-P(sol) polarization free energy of solvation -77.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds