Wall clock time and date at job start Mon Mar 30 2020 07:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47083 * 2 1 4 4 C 1.52998 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47273 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47052 * 304.99492 * 5 4 3 7 7 C 1.52991 * 109.47426 * 65.00097 * 5 4 3 8 8 C 1.52989 * 109.47564 * 185.46572 * 7 5 4 9 9 C 1.50707 * 109.46990 * 185.00223 * 5 4 3 10 10 O 1.21278 * 119.99409 * 275.04454 * 9 5 4 11 11 N 1.34774 * 120.00038 * 95.05052 * 9 5 4 12 12 C 1.47018 * 125.64777 * 354.97756 * 11 9 5 13 13 C 1.54333 * 107.26997 * 181.09558 * 12 11 9 14 14 C 1.55158 * 102.94074 * 22.19293 * 13 12 11 15 15 H 1.08997 * 111.03534 * 82.58437 * 14 13 12 16 16 C 1.50699 * 111.00477 * 206.42198 * 14 13 12 17 17 H 1.07998 * 119.99600 * 112.19741 * 16 14 13 18 18 C 1.37871 * 120.00207 * 292.19679 * 16 14 13 19 19 N 1.31519 * 120.00104 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00275 * 179.97438 * 18 16 14 21 21 H 1.48510 * 109.46934 * 269.99981 * 20 18 16 22 22 H 1.48499 * 109.47330 * 150.00466 * 20 18 16 23 23 H 1.48500 * 109.47002 * 29.99786 * 20 18 16 24 24 C 1.47421 * 125.64465 * 175.02069 * 11 9 5 25 25 H 1.09000 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46929 * 300.00254 * 1 2 3 27 27 H 1.09002 * 109.46891 * 59.99602 * 1 2 3 28 28 H 1.08998 * 109.46929 * 239.99746 * 2 1 3 29 29 H 1.09002 * 109.46891 * 120.00398 * 2 1 3 30 30 H 1.08998 * 109.47445 * 60.00062 * 3 2 1 31 31 H 1.08994 * 109.47298 * 299.99874 * 3 2 1 32 32 H 1.09008 * 109.47564 * 59.99880 * 4 3 2 33 33 H 1.09006 * 109.47328 * 300.00126 * 4 3 2 34 34 H 1.09006 * 109.47031 * 305.46646 * 7 5 4 35 35 H 1.08998 * 109.47226 * 65.46116 * 7 5 4 36 36 H 1.09004 * 109.47382 * 54.89295 * 8 7 5 37 37 H 1.09004 * 109.47546 * 174.89118 * 8 7 5 38 38 H 1.09006 * 109.47557 * 294.88938 * 8 7 5 39 39 H 1.08997 * 109.88661 * 300.51473 * 12 11 9 40 40 H 1.09000 * 109.88471 * 61.68094 * 12 11 9 41 41 H 1.09001 * 110.71636 * 263.82981 * 13 12 11 42 42 H 1.08995 * 110.71661 * 140.55854 * 13 12 11 43 43 H 0.97001 * 119.99614 * 0.02562 * 19 18 16 44 44 H 1.09004 * 110.37101 * 36.99859 * 24 11 9 45 45 H 1.09004 * 110.46223 * 274.71663 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6452 3.4244 -0.8413 7 6 3.6760 3.5682 1.3078 8 6 4.0657 5.0466 1.2525 9 6 5.5820 2.8867 -0.1245 10 8 6.2726 2.7640 0.8649 11 7 6.1577 3.0247 -1.3353 12 6 5.4467 3.0773 -2.6211 13 6 6.5126 3.2135 -3.7288 14 6 7.7931 2.6612 -3.0486 15 1 7.8235 1.5727 -3.0971 16 6 9.0321 3.2610 -3.6619 17 1 9.6494 3.9331 -3.0843 18 6 9.3777 2.9519 -4.9603 19 7 8.6257 2.1338 -5.6639 20 14 10.9131 3.6960 -5.7207 21 1 10.5658 4.9797 -6.3817 22 1 11.4724 2.7571 -6.7262 23 1 11.9215 3.9428 -4.6590 24 6 7.6046 3.1470 -1.5897 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.9331 0.9287 -0.8909 33 1 3.9338 0.9284 0.8891 34 1 2.5981 3.4815 1.4451 35 1 4.1882 3.0884 2.1418 36 1 3.6260 5.5054 0.3669 37 1 3.6975 5.5531 2.1448 38 1 5.1512 5.1349 1.2065 39 1 4.8757 2.1603 -2.7668 40 1 4.7794 3.9389 -2.6408 41 1 6.6452 4.2582 -4.0099 42 1 6.2461 2.6103 -4.5966 43 1 7.8278 1.7483 -5.2694 44 1 8.1655 2.5127 -0.9033 45 1 7.9224 4.1850 -1.4916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397561524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:50 Heat of formation + Delta-G solvation = -82.061405 kcal Electronic energy + Delta-G solvation = -21144.214234 eV Core-core repulsion = 18159.785199 eV Total energy + Delta-G solvation = -2984.429035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.89701 -37.36623 -36.26885 -34.01098 -33.30962 -30.77314 -30.07024 -28.56520 -26.88650 -24.51092 -22.99404 -22.95527 -21.62824 -20.75389 -19.97269 -18.41547 -17.28951 -16.61511 -15.68267 -15.44498 -15.09694 -14.59259 -14.01163 -13.84673 -13.78072 -13.61733 -13.24632 -12.88728 -12.72377 -12.38670 -12.18124 -12.08021 -11.93367 -11.66214 -11.43929 -11.28973 -11.23981 -11.08809 -10.97642 -10.76497 -10.71488 -10.65657 -10.42241 -10.15629 -9.98649 -9.70177 -9.26595 -8.62501 -8.43592 -8.07320 -6.43591 -4.16275 3.00293 3.39988 3.43394 3.49893 3.59639 4.47382 4.57583 4.63184 4.77871 4.89198 4.99962 5.10404 5.25434 5.25816 5.30053 5.43627 5.46781 5.50142 5.59123 5.61780 5.65368 5.71872 5.79836 5.83349 5.84880 5.89264 5.95496 6.03506 6.11731 6.15399 6.18858 6.24146 6.27681 6.31916 6.49403 6.65917 6.77518 6.88874 7.06883 7.45788 8.06093 8.10087 8.34972 8.60035 8.77962 9.55561 10.95159 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024322 B = 0.004197 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.941433 B = 6669.906051 C = 7407.418474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.108 4.108 5 C -0.104 4.104 6 H 0.086 0.914 7 C -0.108 4.108 8 C -0.154 4.154 9 C 0.528 3.472 10 O -0.554 6.554 11 N -0.613 5.613 12 C 0.099 3.901 13 C -0.127 4.127 14 C 0.030 3.970 15 H 0.032 0.968 16 C -0.594 4.594 17 H 0.053 0.947 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 1.071 2.929 21 H -0.287 1.287 22 H -0.284 1.284 23 H -0.288 1.288 24 C 0.114 3.886 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.271 0.729 44 H 0.062 0.938 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.080 0.320 9.039 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.146 4.146 5 C -0.125 4.125 6 H 0.104 0.896 7 C -0.146 4.146 8 C -0.212 4.212 9 C 0.317 3.683 10 O -0.433 6.433 11 N -0.346 5.346 12 C -0.024 4.024 13 C -0.165 4.165 14 C 0.010 3.990 15 H 0.050 0.950 16 C -0.632 4.632 17 H 0.072 0.928 18 C -0.182 4.182 19 N -0.545 5.545 20 Si 0.899 3.101 21 H -0.214 1.214 22 H -0.210 1.210 23 H -0.214 1.214 24 C -0.007 4.007 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.834 0.289 8.241 16.106 hybrid contribution -0.972 0.020 1.241 1.577 sum -14.806 0.310 9.482 17.585 Atomic orbital electron populations 1.21773 0.95977 1.01466 1.01716 1.21540 0.95700 0.96975 1.02185 1.21664 0.94741 0.96849 1.02280 1.21497 0.95633 0.94479 1.02972 1.21389 0.92490 0.98298 1.00323 0.89561 1.21462 1.00848 0.95707 0.96558 1.21798 1.02150 0.95931 1.01276 1.20209 0.90039 0.76197 0.81888 1.90639 1.65141 1.50934 1.36569 1.48763 1.09435 1.70757 1.05619 1.22149 0.96065 0.99817 0.84330 1.22876 0.95577 1.02131 0.95937 1.19991 0.93791 0.96213 0.88963 0.94981 1.21821 1.09221 1.31445 1.00701 0.92849 1.25807 1.02709 0.95469 0.94195 1.70791 1.15666 1.28527 1.39523 0.83507 0.74912 0.75985 0.75678 1.21420 1.20976 1.21411 1.22430 0.78692 1.00514 0.99057 0.92906 0.92858 0.92756 0.91937 0.92031 0.91559 0.91851 0.91544 0.91203 0.91233 0.90749 0.92979 0.92692 0.92426 0.92516 0.92701 0.91398 0.91154 0.91774 0.91983 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.11 5.93 -26.73 -0.16 -1.27 16 3 C -0.12 -1.10 4.98 -26.73 -0.13 -1.24 16 4 C -0.11 -1.29 4.66 -26.73 -0.12 -1.42 16 5 C -0.10 -1.40 1.82 -91.77 -0.17 -1.56 16 6 H 0.09 1.07 6.96 -51.93 -0.36 0.71 16 7 C -0.11 -1.31 5.04 -26.74 -0.13 -1.45 16 8 C -0.15 -1.89 9.65 37.15 0.36 -1.53 16 9 C 0.53 9.62 5.98 -10.98 -0.07 9.55 16 10 O -0.55 -11.89 16.22 5.56 0.09 -11.80 16 11 N -0.61 -11.77 3.33 -170.51 -0.57 -12.34 16 12 C 0.10 1.72 6.15 -3.06 -0.02 1.70 16 13 C -0.13 -2.66 5.82 -24.89 -0.14 -2.80 16 14 C 0.03 0.71 2.49 -89.62 -0.22 0.49 16 15 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 16 C -0.59 -15.98 8.49 -34.44 -0.29 -16.28 16 17 H 0.05 1.44 7.77 -52.49 -0.41 1.04 16 18 C 0.02 0.63 5.37 -17.82 -0.10 0.53 16 19 N -0.91 -26.06 13.51 55.43 0.75 -25.31 16 20 Si 1.07 24.41 29.90 -169.99 -5.08 19.32 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 C 0.11 2.53 6.37 -2.53 -0.02 2.51 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.58 6.45 -51.93 -0.34 0.24 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.68 6.33 -51.93 -0.33 0.35 16 35 H 0.07 1.01 7.66 -51.93 -0.40 0.61 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.85 7.42 -51.93 -0.39 0.47 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.83 7.73 -51.93 -0.40 0.43 16 41 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 42 H 0.07 1.51 6.86 -51.93 -0.36 1.16 16 43 H 0.27 7.61 5.69 -40.82 -0.23 7.38 16 44 H 0.06 1.42 7.99 -51.93 -0.41 1.01 16 45 H 0.06 1.34 8.01 -51.93 -0.42 0.92 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -29.86 351.31 -8.67 -38.53 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.31 Total: -0.16 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.85 Total: -13.54 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.18 Total: -37.65 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.32 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.86 -8.67 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397561524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.529 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds