Wall clock time and date at job start Mon Mar 30 2020 07:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47083 * 2 1 4 4 C 1.52998 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47273 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47052 * 304.99492 * 5 4 3 7 7 C 1.52991 * 109.47426 * 65.00097 * 5 4 3 8 8 C 1.52989 * 109.47564 * 185.46572 * 7 5 4 9 9 C 1.50707 * 109.46990 * 185.00223 * 5 4 3 10 10 O 1.21278 * 119.99409 * 275.04454 * 9 5 4 11 11 N 1.34774 * 120.00038 * 95.05052 * 9 5 4 12 12 C 1.47018 * 125.64777 * 354.97756 * 11 9 5 13 13 C 1.54333 * 107.26997 * 181.09558 * 12 11 9 14 14 C 1.55158 * 102.94074 * 22.19293 * 13 12 11 15 15 H 1.08997 * 111.03534 * 82.58437 * 14 13 12 16 16 C 1.50699 * 111.00477 * 206.42198 * 14 13 12 17 17 H 1.07998 * 119.99600 * 112.19741 * 16 14 13 18 18 C 1.37871 * 120.00207 * 292.19679 * 16 14 13 19 19 N 1.31519 * 120.00104 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 120.00275 * 179.97438 * 18 16 14 21 21 H 1.48510 * 109.46934 * 269.99981 * 20 18 16 22 22 H 1.48499 * 109.47330 * 150.00466 * 20 18 16 23 23 H 1.48500 * 109.47002 * 29.99786 * 20 18 16 24 24 C 1.47421 * 125.64465 * 175.02069 * 11 9 5 25 25 H 1.09000 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46929 * 300.00254 * 1 2 3 27 27 H 1.09002 * 109.46891 * 59.99602 * 1 2 3 28 28 H 1.08998 * 109.46929 * 239.99746 * 2 1 3 29 29 H 1.09002 * 109.46891 * 120.00398 * 2 1 3 30 30 H 1.08998 * 109.47445 * 60.00062 * 3 2 1 31 31 H 1.08994 * 109.47298 * 299.99874 * 3 2 1 32 32 H 1.09008 * 109.47564 * 59.99880 * 4 3 2 33 33 H 1.09006 * 109.47328 * 300.00126 * 4 3 2 34 34 H 1.09006 * 109.47031 * 305.46646 * 7 5 4 35 35 H 1.08998 * 109.47226 * 65.46116 * 7 5 4 36 36 H 1.09004 * 109.47382 * 54.89295 * 8 7 5 37 37 H 1.09004 * 109.47546 * 174.89118 * 8 7 5 38 38 H 1.09006 * 109.47557 * 294.88938 * 8 7 5 39 39 H 1.08997 * 109.88661 * 300.51473 * 12 11 9 40 40 H 1.09000 * 109.88471 * 61.68094 * 12 11 9 41 41 H 1.09001 * 110.71636 * 263.82981 * 13 12 11 42 42 H 1.08995 * 110.71661 * 140.55854 * 13 12 11 43 43 H 0.97001 * 119.99614 * 0.02562 * 19 18 16 44 44 H 1.09004 * 110.37101 * 36.99859 * 24 11 9 45 45 H 1.09004 * 110.46223 * 274.71663 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6452 3.4244 -0.8413 7 6 3.6760 3.5682 1.3078 8 6 4.0657 5.0466 1.2525 9 6 5.5820 2.8867 -0.1245 10 8 6.2726 2.7640 0.8649 11 7 6.1577 3.0247 -1.3353 12 6 5.4467 3.0773 -2.6211 13 6 6.5126 3.2135 -3.7288 14 6 7.7931 2.6612 -3.0486 15 1 7.8235 1.5727 -3.0971 16 6 9.0321 3.2610 -3.6619 17 1 9.6494 3.9331 -3.0843 18 6 9.3777 2.9519 -4.9603 19 7 8.6257 2.1338 -5.6639 20 14 10.9131 3.6960 -5.7207 21 1 10.5658 4.9797 -6.3817 22 1 11.4724 2.7571 -6.7262 23 1 11.9215 3.9428 -4.6590 24 6 7.6046 3.1470 -1.5897 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.9331 0.9287 -0.8909 33 1 3.9338 0.9284 0.8891 34 1 2.5981 3.4815 1.4451 35 1 4.1882 3.0884 2.1418 36 1 3.6260 5.5054 0.3669 37 1 3.6975 5.5531 2.1448 38 1 5.1512 5.1349 1.2065 39 1 4.8757 2.1603 -2.7668 40 1 4.7794 3.9389 -2.6408 41 1 6.6452 4.2582 -4.0099 42 1 6.2461 2.6103 -4.5966 43 1 7.8278 1.7483 -5.2694 44 1 8.1655 2.5127 -0.9033 45 1 7.9224 4.1850 -1.4916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397561524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:49 Heat of formation + Delta-G solvation = -97.503272 kcal Electronic energy + Delta-G solvation = -21144.883843 eV Core-core repulsion = 18159.785199 eV Total energy + Delta-G solvation = -2985.098644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35477 -38.90085 -37.39306 -35.27672 -34.89187 -32.12863 -31.37080 -30.23308 -27.96004 -26.34778 -24.51837 -23.85083 -22.69541 -21.91020 -21.58432 -19.83656 -19.07453 -18.21579 -17.12284 -16.51479 -16.40265 -15.98280 -15.66000 -14.99840 -14.80288 -14.61976 -14.49234 -14.37849 -14.11037 -13.78067 -13.63839 -13.47398 -13.20642 -12.97948 -12.77902 -12.57151 -12.44523 -12.21634 -12.01659 -11.96025 -11.93836 -11.84195 -11.68366 -11.54880 -11.53053 -11.25340 -10.76411 -10.59867 -10.50168 -9.66583 -8.61997 -6.35152 1.55264 1.56859 1.62812 1.80870 2.01310 2.57240 3.17220 3.42732 3.68638 3.82680 3.86558 4.05932 4.14240 4.15841 4.21642 4.26380 4.32242 4.37792 4.44189 4.56812 4.58849 4.63382 4.64403 4.77317 4.85747 4.87001 4.87789 5.03037 5.05061 5.06460 5.10255 5.17651 5.19134 5.24382 5.28574 5.34762 5.37191 5.45454 5.51895 5.52473 6.02948 6.17507 6.55677 6.64112 7.11497 7.43442 8.78119 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024322 B = 0.004197 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.941433 B = 6669.906051 C = 7407.418474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.110 4.110 4 C -0.104 4.104 5 C -0.094 4.094 6 H 0.108 0.892 7 C -0.105 4.105 8 C -0.153 4.153 9 C 0.523 3.477 10 O -0.593 6.593 11 N -0.618 5.618 12 C 0.108 3.892 13 C -0.117 4.117 14 C 0.022 3.978 15 H 0.005 0.995 16 C -0.609 4.609 17 H 0.045 0.955 18 C -0.021 4.021 19 N -0.931 5.931 20 Si 1.114 2.886 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.277 1.277 24 C 0.124 3.876 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.022 0.978 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.264 0.736 44 H 0.042 0.958 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 1.230 9.061 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.115 4.115 6 H 0.126 0.874 7 C -0.142 4.142 8 C -0.211 4.211 9 C 0.314 3.686 10 O -0.474 6.474 11 N -0.350 5.350 12 C -0.014 4.014 13 C -0.155 4.155 14 C 0.003 3.997 15 H 0.023 0.977 16 C -0.647 4.647 17 H 0.063 0.937 18 C -0.221 4.221 19 N -0.568 5.568 20 Si 0.937 3.063 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.203 1.203 24 C 0.002 3.998 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.213 1.201 8.273 18.241 hybrid contribution -0.213 -0.302 1.299 1.350 sum -16.426 0.899 9.571 19.032 Atomic orbital electron populations 1.21755 0.94839 1.01902 1.02241 1.21545 0.96675 0.96609 1.01759 1.21624 0.92235 0.97432 1.03428 1.21488 0.97726 0.93063 1.01949 1.21475 0.88284 0.99777 1.01996 0.87434 1.21495 1.02674 0.95158 0.94921 1.21800 0.99917 0.96400 1.02945 1.21206 0.92095 0.74604 0.80676 1.90617 1.66566 1.52462 1.37758 1.48849 1.08087 1.71144 1.06940 1.22178 0.94974 1.02541 0.81698 1.22647 0.95095 1.01008 0.96786 1.19904 0.94717 0.94482 0.90629 0.97695 1.22131 1.10323 1.31297 1.00994 0.93703 1.27100 1.04817 0.95247 0.94914 1.70887 1.16129 1.29812 1.39925 0.82942 0.72103 0.75920 0.75343 1.19673 1.20937 1.20261 1.22070 0.80993 0.99424 0.97360 0.92621 0.92171 0.92361 0.92595 0.92390 0.90293 0.90698 0.92517 0.92463 0.87742 0.92692 0.91531 0.90885 0.95904 0.90306 0.89149 0.92232 0.91874 0.92574 0.93926 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.13 -1.95 5.93 30.60 0.18 -1.77 16 3 C -0.11 -1.69 4.98 30.59 0.15 -1.53 16 4 C -0.10 -2.28 4.66 30.59 0.14 -2.14 16 5 C -0.09 -2.31 1.82 -11.54 -0.02 -2.33 16 6 H 0.11 2.22 6.96 -2.39 -0.02 2.20 16 7 C -0.10 -2.28 5.04 30.59 0.15 -2.13 16 8 C -0.15 -3.42 9.65 71.98 0.69 -2.72 16 9 C 0.52 18.78 5.98 87.66 0.52 19.31 16 10 O -0.59 -25.96 16.22 -3.02 -0.05 -26.01 16 11 N -0.62 -23.45 3.33 -811.77 -2.70 -26.15 16 12 C 0.11 3.52 6.15 86.73 0.53 4.05 16 13 C -0.12 -4.88 5.82 31.79 0.19 -4.70 16 14 C 0.02 1.09 2.49 -10.15 -0.03 1.06 16 15 H 0.00 0.27 7.89 -2.39 -0.02 0.25 16 16 C -0.61 -33.57 8.49 25.60 0.22 -33.35 16 17 H 0.04 2.48 7.77 -2.91 -0.02 2.46 16 18 C -0.02 -1.17 5.37 84.65 0.45 -0.72 16 19 N -0.93 -54.02 13.51 21.45 0.29 -53.73 16 20 Si 1.11 49.08 29.90 68.60 2.05 51.14 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 24 C 0.12 5.65 6.37 86.86 0.55 6.20 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.04 6.45 -2.39 -0.02 1.02 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.10 1.58 6.33 -2.38 -0.02 1.57 16 35 H 0.05 1.43 7.66 -2.39 -0.02 1.41 16 36 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.02 0.65 7.42 -2.38 -0.02 0.63 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.09 2.37 7.73 -2.39 -0.02 2.35 16 41 H 0.06 2.56 8.03 -2.39 -0.02 2.55 16 42 H 0.06 2.72 6.86 -2.39 -0.02 2.70 16 43 H 0.26 15.17 5.69 -92.71 -0.53 14.64 16 44 H 0.04 2.05 7.99 -2.38 -0.02 2.03 16 45 H 0.05 2.46 8.01 -2.38 -0.02 2.44 16 Total: -1.00 -66.47 351.31 5.22 -61.25 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.16 Total: 15.43 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 4.46 Total: -21.92 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -2.41 Total: -79.89 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.05 Total: -26.01 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.05 Total: 51.14 kcal Total: -66.47 5.22 -61.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397561524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.253 kcal (2) G-P(sol) polarization free energy of solvation -66.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds