Wall clock time and date at job start Mon Mar 30 2020 07:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 C 1.53003 * 109.47261 * 240.00289 * 2 1 3 5 5 C 1.52999 * 109.47374 * 120.00032 * 2 1 3 6 6 C 1.53003 * 109.47136 * 300.00333 * 5 2 1 7 7 C 1.53001 * 109.47374 * 179.97438 * 5 2 1 8 8 C 1.50699 * 109.46866 * 60.00130 * 5 2 1 9 9 O 1.21283 * 120.00283 * 357.43255 * 8 5 2 10 10 N 1.34777 * 120.00040 * 177.43409 * 8 5 2 11 11 C 1.47419 * 125.65101 * 174.66894 * 10 8 5 12 12 C 1.54912 * 104.93142 * 204.15618 * 11 10 8 13 13 C 1.55155 * 101.58077 * 322.93722 * 12 11 10 14 14 H 1.09000 * 110.71774 * 276.95962 * 13 12 11 15 15 C 1.50694 * 110.71990 * 153.86344 * 13 12 11 16 16 H 1.07997 * 120.00676 * 241.45808 * 15 13 12 17 17 C 1.37889 * 119.99822 * 61.45454 * 15 13 12 18 18 N 1.31503 * 119.99939 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99700 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47079 * 60.00176 * 19 17 15 21 21 H 1.48497 * 109.46434 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47005 * 299.99874 * 19 17 15 23 23 C 1.47294 * 125.79248 * 354.67307 * 10 8 5 24 24 H 1.09003 * 109.47002 * 299.99675 * 1 2 3 25 25 H 1.09000 * 109.46990 * 60.00007 * 1 2 3 26 26 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47633 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47312 * 300.00432 * 3 2 1 29 29 H 1.09003 * 109.47367 * 60.00341 * 3 2 1 30 30 H 1.09006 * 109.46795 * 300.00175 * 4 2 1 31 31 H 1.09000 * 109.46841 * 59.99852 * 4 2 1 32 32 H 1.08997 * 109.47332 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.46663 * 186.63178 * 6 5 2 34 34 H 1.09007 * 109.46540 * 306.63026 * 6 5 2 35 35 H 1.08998 * 109.47004 * 66.62908 * 6 5 2 36 36 H 1.09001 * 109.46916 * 288.59936 * 7 5 2 37 37 H 1.08994 * 109.47052 * 48.59553 * 7 5 2 38 38 H 1.08995 * 109.47076 * 168.60183 * 7 5 2 39 39 H 1.09004 * 110.36469 * 85.26106 * 11 10 8 40 40 H 1.09006 * 110.36943 * 323.05420 * 11 10 8 41 41 H 1.08997 * 111.00465 * 81.01541 * 12 11 10 42 42 H 1.09001 * 111.00287 * 204.82410 * 12 11 10 43 43 H 0.97004 * 120.00191 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.85557 * 59.50101 * 23 10 8 45 45 H 1.08997 * 109.99927 * 298.43187 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5300 0.0000 2.4985 7 6 3.5701 -0.7218 1.2489 8 6 1.5378 -2.1421 1.2491 9 8 0.8026 -2.5254 0.3640 10 7 1.9055 -2.9869 2.2328 11 6 1.4046 -4.3610 2.4171 12 6 1.6067 -4.6608 3.9235 13 6 2.9524 -3.9423 4.2062 14 1 3.7940 -4.5744 3.9227 15 6 3.0508 -3.5460 5.6568 16 1 3.1399 -2.5042 5.9272 17 6 3.0268 -4.5135 6.6390 18 7 2.9177 -5.7820 6.3098 19 14 3.1479 -4.0221 8.4372 20 1 2.0124 -3.1304 8.7842 21 1 3.0989 -5.2388 9.2870 22 1 4.4283 -3.3065 8.6696 23 6 2.8739 -2.6934 3.3031 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 1.9871 -0.4408 3.3845 34 1 1.7932 1.0562 2.4411 35 1 0.4465 -0.1017 2.5598 36 1 3.9330 -1.4017 0.4780 37 1 3.9337 0.2854 1.0455 38 1 3.9335 -1.0496 2.2228 39 1 1.9811 -5.0595 1.8106 40 1 0.3474 -4.4175 2.1576 41 1 0.8014 -4.2307 4.5189 42 1 1.6908 -5.7331 4.1006 43 1 2.9004 -6.4626 7.0008 44 1 2.5346 -1.8362 3.8846 45 1 3.8534 -2.4850 2.8727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397563033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:11 Heat of formation + Delta-G solvation = -57.698376 kcal Electronic energy + Delta-G solvation = -22362.198109 eV Core-core repulsion = 19378.825535 eV Total energy + Delta-G solvation = -2983.372574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.90493 -39.16079 -37.68227 -34.99657 -33.52135 -31.56449 -29.96078 -29.46106 -28.16322 -26.96203 -26.76495 -25.03661 -23.08409 -21.69055 -20.82042 -19.06147 -18.43142 -17.50347 -16.80223 -16.55354 -16.33889 -15.78627 -15.44361 -15.19341 -14.85639 -14.44936 -14.36800 -14.06867 -13.78869 -13.53469 -13.18551 -13.01311 -12.94105 -12.78601 -12.72422 -12.66031 -12.51509 -12.39773 -12.25556 -12.14993 -11.96202 -11.87936 -11.58139 -11.36422 -11.20406 -11.02720 -10.88359 -10.48762 -10.19860 -9.43538 -8.11823 -6.21837 1.47224 1.47796 1.54751 1.71255 2.16416 2.46437 3.20644 3.49849 3.70428 3.86184 4.09618 4.15532 4.24796 4.30355 4.36790 4.43135 4.44791 4.55087 4.65320 4.71674 4.77185 4.86258 4.87260 4.89739 4.95271 4.98090 5.08369 5.11666 5.14425 5.15796 5.23956 5.27602 5.32703 5.35995 5.41066 5.52478 5.62211 5.64203 5.71377 5.77370 5.90759 6.29149 6.73177 6.86973 7.28301 7.46433 8.97018 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030955 B = 0.005175 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.312668 B = 5409.485440 C = 5833.671529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.039 4.039 3 C -0.141 4.141 4 C -0.150 4.150 5 C -0.061 4.061 6 C -0.150 4.150 7 C -0.156 4.156 8 C 0.528 3.472 9 O -0.573 6.573 10 N -0.613 5.613 11 C 0.107 3.893 12 C -0.096 4.096 13 C 0.034 3.966 14 H 0.014 0.986 15 C -0.529 4.529 16 H 0.064 0.936 17 C 0.018 3.982 18 N -0.917 5.917 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.268 1.268 23 C 0.108 3.892 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.261 0.739 44 H 0.076 0.924 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 13.085 -9.440 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.040 4.040 3 C -0.198 4.198 4 C -0.207 4.207 5 C -0.064 4.064 6 C -0.207 4.207 7 C -0.212 4.212 8 C 0.318 3.682 9 O -0.454 6.454 10 N -0.345 5.345 11 C -0.016 4.016 12 C -0.134 4.134 13 C 0.016 3.984 14 H 0.032 0.968 15 C -0.567 4.567 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.556 5.556 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.193 1.193 23 C -0.014 4.014 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.519 12.757 -9.882 16.145 hybrid contribution -0.126 -0.704 1.079 1.294 sum -0.645 12.053 -8.804 14.940 Atomic orbital electron populations 1.22131 0.95137 1.02464 1.01325 1.20274 0.95476 0.95716 0.92500 1.22014 1.01732 0.93428 1.02624 1.22061 1.00653 1.01032 0.96943 1.20732 0.97810 0.89616 0.98264 1.22114 1.00934 1.01973 0.95631 1.22245 0.91967 1.04095 1.02922 1.20951 0.79809 0.87932 0.79467 1.90510 1.39361 1.78698 1.36853 1.48817 1.43348 1.14345 1.27956 1.22232 0.98389 0.83346 0.97626 1.22478 0.99006 1.00740 0.91214 1.19669 0.93313 0.91671 0.93796 0.96812 1.21334 1.50763 0.93439 0.91144 0.91780 1.25694 0.94653 0.94910 1.02926 1.70057 1.50589 1.00560 1.34363 0.85685 0.78954 0.77420 0.80047 1.19740 1.21560 1.19319 1.22660 0.91345 0.99800 0.87551 0.92741 0.92322 0.92702 0.91242 0.91750 0.91459 0.93210 0.92219 0.92427 0.91853 0.88633 0.93194 0.93062 0.88684 0.91123 0.92503 0.92122 0.93876 0.91979 0.93029 0.90623 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 7.83 71.98 0.56 -3.40 16 2 C -0.04 -0.93 0.32 -52.18 -0.02 -0.95 16 3 C -0.14 -2.41 7.81 71.98 0.56 -1.85 16 4 C -0.15 -3.77 7.84 71.98 0.56 -3.21 16 5 C -0.06 -1.63 0.08 -52.93 0.00 -1.63 16 6 C -0.15 -3.68 7.53 71.98 0.54 -3.14 16 7 C -0.16 -3.63 7.08 71.98 0.51 -3.12 16 8 C 0.53 18.59 5.95 87.66 0.52 19.11 16 9 O -0.57 -22.87 11.65 -3.04 -0.04 -22.90 16 10 N -0.61 -23.06 3.32 -811.09 -2.70 -25.76 16 11 C 0.11 4.28 6.88 86.86 0.60 4.88 16 12 C -0.10 -4.35 5.75 31.99 0.18 -4.17 16 13 C 0.03 1.61 2.87 -10.35 -0.03 1.58 16 14 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 15 C -0.53 -26.76 8.50 25.60 0.22 -26.54 16 16 H 0.06 3.10 7.57 -2.91 -0.02 3.08 16 17 C 0.02 0.93 5.33 84.66 0.45 1.38 16 18 N -0.92 -50.64 12.11 21.45 0.26 -50.38 16 19 Si 0.95 41.24 29.54 68.60 2.03 43.26 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 C 0.11 4.06 4.73 86.68 0.41 4.47 16 24 H 0.05 1.30 6.58 -2.39 -0.02 1.29 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.79 5.42 -2.39 -0.01 1.78 16 27 H 0.07 1.04 6.20 -2.39 -0.01 1.03 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.04 6.29 -2.39 -0.01 1.03 16 30 H 0.05 1.59 5.61 -2.38 -0.01 1.57 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.31 6.70 -2.39 -0.02 1.29 16 33 H 0.06 1.70 5.00 -2.39 -0.01 1.69 16 34 H 0.10 1.79 6.10 -2.38 -0.01 1.78 16 35 H 0.05 1.31 6.80 -2.39 -0.02 1.30 16 36 H 0.05 1.27 7.03 -2.39 -0.02 1.25 16 37 H 0.09 1.69 5.90 -2.39 -0.01 1.68 16 38 H 0.07 1.74 4.77 -2.39 -0.01 1.73 16 39 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.06 2.40 8.09 -2.38 -0.02 2.38 16 41 H 0.04 2.05 8.04 -2.39 -0.02 2.03 16 42 H 0.06 3.05 7.54 -2.39 -0.02 3.03 16 43 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.08 2.76 4.93 -2.38 -0.01 2.75 16 45 H 0.07 2.53 5.83 -2.39 -0.01 2.52 16 Total: -1.00 -58.35 319.85 5.60 -52.74 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.98 Total: 19.62 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 5.07 Total: -16.60 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -2.44 Total: -76.13 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.04 Total: -22.90 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -58.35 5.60 -52.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397563033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.953 kcal (2) G-P(sol) polarization free energy of solvation -58.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds