Wall clock time and date at job start Mon Mar 30 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46940 * 2 1 4 4 C 1.52992 * 109.47141 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47366 * 64.99786 * 4 3 2 6 6 C 1.52995 * 109.47405 * 185.46443 * 5 4 3 7 7 C 1.53008 * 109.47417 * 174.88650 * 6 5 4 8 8 C 1.50696 * 109.47086 * 185.00157 * 4 3 2 9 9 O 1.21283 * 120.00107 * 274.64425 * 8 4 3 10 10 N 1.34780 * 120.00098 * 94.64480 * 8 4 3 11 11 C 1.47425 * 125.64827 * 355.07098 * 10 8 4 12 12 C 1.54905 * 104.83375 * 155.83588 * 11 10 8 13 13 C 1.55158 * 101.58200 * 37.00398 * 12 11 10 14 14 H 1.09001 * 110.71716 * 82.86236 * 13 12 11 15 15 C 1.50701 * 110.72442 * 206.13365 * 13 12 11 16 16 H 1.07994 * 119.99661 * 118.54754 * 15 13 12 17 17 C 1.37875 * 119.99847 * 298.55595 * 15 13 12 18 18 N 1.31514 * 120.00161 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 120.00306 * 359.97438 * 17 15 13 20 20 H 1.48505 * 109.46945 * 90.00383 * 19 17 15 21 21 H 1.48500 * 109.47491 * 210.00697 * 19 17 15 22 22 H 1.48501 * 109.47032 * 330.00718 * 19 17 15 23 23 C 1.47020 * 125.64569 * 175.02407 * 10 8 4 24 24 H 1.09003 * 109.46703 * 299.99300 * 1 2 3 25 25 H 1.08990 * 109.47507 * 59.99809 * 1 2 3 26 26 H 1.09001 * 109.46503 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46703 * 240.00700 * 2 1 3 28 28 H 1.08990 * 109.47507 * 120.00191 * 2 1 3 29 29 H 1.09001 * 109.46950 * 59.99840 * 3 2 1 30 30 H 1.09006 * 109.46942 * 300.00730 * 3 2 1 31 31 H 1.09003 * 109.47245 * 305.00411 * 4 3 2 32 32 H 1.09002 * 109.47624 * 305.46609 * 5 4 3 33 33 H 1.09004 * 109.47124 * 65.46542 * 5 4 3 34 34 H 1.09005 * 109.47111 * 294.88629 * 6 5 4 35 35 H 1.09001 * 109.47205 * 54.88237 * 6 5 4 36 36 H 1.09002 * 109.46633 * 60.00022 * 7 6 5 37 37 H 1.08991 * 109.46805 * 179.97438 * 7 6 5 38 38 H 1.08993 * 109.46584 * 300.00150 * 7 6 5 39 39 H 1.08997 * 110.36386 * 36.99584 * 11 10 8 40 40 H 1.09005 * 110.36333 * 274.67422 * 11 10 8 41 41 H 1.09000 * 111.00152 * 278.93558 * 12 11 10 42 42 H 1.08993 * 111.03894 * 155.09783 * 12 11 10 43 43 H 0.96999 * 120.00723 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.88061 * 61.68167 * 23 10 8 45 45 H 1.08998 * 109.89094 * 300.51122 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0795 0.8332 -1.3083 6 6 5.6033 0.7078 -1.2528 7 6 6.1013 -0.0171 -2.5049 8 6 4.0723 2.8580 0.1232 9 8 4.1938 3.5472 -0.8673 10 7 4.3865 3.3580 1.3348 11 6 4.1914 2.6712 2.6246 12 6 5.2213 3.3230 3.5807 13 6 5.1878 4.8021 3.1131 14 1 4.3545 5.3331 3.5731 15 6 6.4939 5.4882 3.4204 16 1 7.0963 5.8870 2.6177 17 6 6.9199 5.6065 4.7264 18 7 8.0594 6.2057 4.9947 19 14 5.8777 4.9171 6.1149 20 1 6.2700 3.5088 6.3760 21 1 6.0903 5.7258 7.3421 22 1 4.4443 4.9685 5.7305 23 6 4.9815 4.6782 1.5888 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 3.9337 0.8530 0.8409 32 1 3.6385 -0.1542 -1.4451 33 1 3.7979 1.4757 -2.1426 34 1 6.0482 1.7019 -1.2074 35 1 5.8892 0.1410 -0.3668 36 1 5.8153 0.5498 -3.3908 37 1 7.1869 -0.1060 -2.4655 38 1 5.6564 -1.0111 -2.5502 39 1 4.3920 1.6049 2.5207 40 1 3.1777 2.8335 2.9912 41 1 6.2122 2.8913 3.4404 42 1 4.9021 3.2341 4.6190 43 1 8.3590 6.2893 5.9135 44 1 4.3080 5.4614 1.2409 45 1 5.9408 4.7572 1.0773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397665443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:16 Heat of formation + Delta-G solvation = -69.934825 kcal Electronic energy + Delta-G solvation = -21355.046003 eV Core-core repulsion = 18371.142817 eV Total energy + Delta-G solvation = -2983.903187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95343 -37.44066 -36.06622 -34.11929 -33.00268 -31.26561 -30.39489 -28.62626 -26.44922 -25.57100 -23.47194 -22.28312 -21.48222 -20.90838 -19.65080 -18.53379 -17.22873 -16.86109 -15.54026 -15.25036 -15.10832 -14.77127 -14.40044 -14.22844 -13.66833 -13.44895 -12.97769 -12.86703 -12.76426 -12.62933 -12.43467 -12.14077 -11.99247 -11.86983 -11.60438 -11.31986 -11.20554 -11.15409 -10.96122 -10.83288 -10.67611 -10.53050 -10.41500 -10.16961 -9.99301 -9.64181 -9.26497 -9.17611 -8.64661 -8.11065 -6.15415 -4.16240 2.99711 3.20068 3.29101 3.31457 3.45572 4.32770 4.55573 4.63825 4.80612 4.95102 5.03704 5.10640 5.11701 5.16372 5.27156 5.35970 5.47025 5.51955 5.55479 5.62864 5.65881 5.67858 5.73479 5.81895 5.83997 5.89147 5.97025 6.01488 6.04207 6.11981 6.15188 6.20714 6.35436 6.37445 6.40802 6.54251 6.64363 6.74429 6.90509 7.33168 7.62639 8.02684 8.41807 8.58501 8.87805 9.45162 10.97560 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.004997 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.319239 B = 5601.835232 C = 6318.568737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.106 4.106 5 C -0.103 4.103 6 C -0.129 4.129 7 C -0.148 4.148 8 C 0.529 3.471 9 O -0.550 6.550 10 N -0.612 5.612 11 C 0.099 3.901 12 C -0.143 4.143 13 C 0.009 3.991 14 H 0.041 0.959 15 C -0.513 4.513 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.897 5.897 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.293 1.293 22 H -0.265 1.265 23 C 0.121 3.879 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.265 0.735 44 H 0.053 0.947 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.640 -14.810 -7.907 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.127 4.127 5 C -0.141 4.141 6 C -0.167 4.167 7 C -0.205 4.205 8 C 0.317 3.683 9 O -0.429 6.429 10 N -0.345 5.345 11 C -0.024 4.024 12 C -0.181 4.181 13 C -0.011 4.011 14 H 0.059 0.941 15 C -0.551 4.551 16 H 0.095 0.905 17 C -0.128 4.128 18 N -0.535 5.535 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.190 1.190 23 C -0.001 4.001 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.459 -14.397 -8.362 20.211 hybrid contribution -0.376 -0.317 1.067 1.175 sum -11.835 -14.713 -7.295 20.243 Atomic orbital electron populations 1.21772 0.95852 1.01459 1.01919 1.21581 0.95796 0.96420 1.02272 1.21504 0.92656 0.97430 1.02896 1.21408 0.96929 0.93864 1.00518 1.21554 0.95571 1.00530 0.96410 1.21574 0.95658 1.01327 0.98118 1.21725 1.00774 0.99942 0.98079 1.20190 0.77567 0.88739 0.81809 1.90652 1.54671 1.61119 1.36429 1.48730 1.61259 1.18992 1.05546 1.22384 0.99571 0.96361 0.84116 1.23262 0.98376 0.99388 0.97052 1.20221 0.98777 0.91915 0.90140 0.94112 1.20891 1.03214 1.36992 0.94000 0.90488 1.24963 0.94702 0.94599 0.98567 1.69888 1.20719 1.42917 1.19933 0.86923 0.81409 0.78960 0.81763 1.20216 1.21961 1.18973 1.22111 0.97217 0.82239 0.98500 0.92730 0.92734 0.92824 0.91547 0.91884 0.91625 0.91198 0.89408 0.91236 0.90732 0.91541 0.92271 0.92766 0.92874 0.93050 0.91561 0.92075 0.90270 0.91864 0.92488 0.92858 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.06 5.70 -26.73 -0.15 -1.22 16 3 C -0.11 -1.18 4.66 -26.73 -0.12 -1.30 16 4 C -0.11 -1.35 1.82 -91.78 -0.17 -1.52 16 5 C -0.10 -1.22 4.32 -26.73 -0.12 -1.34 16 6 C -0.13 -1.61 5.67 -26.73 -0.15 -1.76 16 7 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 8 C 0.53 9.20 5.99 -10.99 -0.07 9.13 16 9 O -0.55 -11.44 16.29 5.56 0.09 -11.35 16 10 N -0.61 -11.15 3.33 -170.53 -0.57 -11.71 16 11 C 0.10 1.57 6.72 -2.53 -0.02 1.55 16 12 C -0.14 -2.78 5.19 -24.58 -0.13 -2.91 16 13 C 0.01 0.20 2.34 -89.93 -0.21 -0.01 16 14 H 0.04 0.92 7.37 -51.93 -0.38 0.54 16 15 C -0.51 -13.91 9.08 -34.44 -0.31 -14.22 16 16 H 0.08 2.29 7.82 -52.49 -0.41 1.88 16 17 C 0.07 2.05 5.46 -17.82 -0.10 1.96 16 18 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 19 Si 0.88 20.59 24.50 -169.99 -4.17 16.42 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.26 -5.84 6.47 56.52 0.37 -5.48 16 23 C 0.12 2.54 6.46 -3.06 -0.02 2.52 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.54 6.45 -51.93 -0.34 0.20 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.03 6.39 -51.93 -0.33 0.70 16 32 H 0.07 0.67 6.33 -51.93 -0.33 0.34 16 33 H 0.07 0.99 7.66 -51.93 -0.40 0.60 16 34 H 0.07 1.02 7.40 -51.93 -0.38 0.64 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.88 6.62 -51.93 -0.34 0.54 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.62 8.04 -51.93 -0.42 1.20 16 42 H 0.06 1.21 5.14 -51.93 -0.27 0.94 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 1.54 7.66 -51.93 -0.40 1.14 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -30.34 344.89 -7.74 -38.07 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.24 Total: 0.44 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.82 Total: -11.13 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.21 Total: -37.66 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.34 -7.74 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.861 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds