Wall clock time and date at job start Mon Mar 30 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46940 * 2 1 4 4 C 1.52992 * 109.47141 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47366 * 64.99786 * 4 3 2 6 6 C 1.52995 * 109.47405 * 185.46443 * 5 4 3 7 7 C 1.53008 * 109.47417 * 174.88650 * 6 5 4 8 8 C 1.50696 * 109.47086 * 185.00157 * 4 3 2 9 9 O 1.21283 * 120.00107 * 274.64425 * 8 4 3 10 10 N 1.34780 * 120.00098 * 94.64480 * 8 4 3 11 11 C 1.47425 * 125.64827 * 355.07098 * 10 8 4 12 12 C 1.54905 * 104.83375 * 155.83588 * 11 10 8 13 13 C 1.55158 * 101.58200 * 37.00398 * 12 11 10 14 14 H 1.09001 * 110.71716 * 82.86236 * 13 12 11 15 15 C 1.50701 * 110.72442 * 206.13365 * 13 12 11 16 16 H 1.07994 * 119.99661 * 118.54754 * 15 13 12 17 17 C 1.37875 * 119.99847 * 298.55595 * 15 13 12 18 18 N 1.31514 * 120.00161 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 120.00306 * 359.97438 * 17 15 13 20 20 H 1.48505 * 109.46945 * 90.00383 * 19 17 15 21 21 H 1.48500 * 109.47491 * 210.00697 * 19 17 15 22 22 H 1.48501 * 109.47032 * 330.00718 * 19 17 15 23 23 C 1.47020 * 125.64569 * 175.02407 * 10 8 4 24 24 H 1.09003 * 109.46703 * 299.99300 * 1 2 3 25 25 H 1.08990 * 109.47507 * 59.99809 * 1 2 3 26 26 H 1.09001 * 109.46503 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46703 * 240.00700 * 2 1 3 28 28 H 1.08990 * 109.47507 * 120.00191 * 2 1 3 29 29 H 1.09001 * 109.46950 * 59.99840 * 3 2 1 30 30 H 1.09006 * 109.46942 * 300.00730 * 3 2 1 31 31 H 1.09003 * 109.47245 * 305.00411 * 4 3 2 32 32 H 1.09002 * 109.47624 * 305.46609 * 5 4 3 33 33 H 1.09004 * 109.47124 * 65.46542 * 5 4 3 34 34 H 1.09005 * 109.47111 * 294.88629 * 6 5 4 35 35 H 1.09001 * 109.47205 * 54.88237 * 6 5 4 36 36 H 1.09002 * 109.46633 * 60.00022 * 7 6 5 37 37 H 1.08991 * 109.46805 * 179.97438 * 7 6 5 38 38 H 1.08993 * 109.46584 * 300.00150 * 7 6 5 39 39 H 1.08997 * 110.36386 * 36.99584 * 11 10 8 40 40 H 1.09005 * 110.36333 * 274.67422 * 11 10 8 41 41 H 1.09000 * 111.00152 * 278.93558 * 12 11 10 42 42 H 1.08993 * 111.03894 * 155.09783 * 12 11 10 43 43 H 0.96999 * 120.00723 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.88061 * 61.68167 * 23 10 8 45 45 H 1.08998 * 109.89094 * 300.51122 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0795 0.8332 -1.3083 6 6 5.6033 0.7078 -1.2528 7 6 6.1013 -0.0171 -2.5049 8 6 4.0723 2.8580 0.1232 9 8 4.1938 3.5472 -0.8673 10 7 4.3865 3.3580 1.3348 11 6 4.1914 2.6712 2.6246 12 6 5.2213 3.3230 3.5807 13 6 5.1878 4.8021 3.1131 14 1 4.3545 5.3331 3.5731 15 6 6.4939 5.4882 3.4204 16 1 7.0963 5.8870 2.6177 17 6 6.9199 5.6065 4.7264 18 7 8.0594 6.2057 4.9947 19 14 5.8777 4.9171 6.1149 20 1 6.2700 3.5088 6.3760 21 1 6.0903 5.7258 7.3421 22 1 4.4443 4.9685 5.7305 23 6 4.9815 4.6782 1.5888 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 3.9337 0.8530 0.8409 32 1 3.6385 -0.1542 -1.4451 33 1 3.7979 1.4757 -2.1426 34 1 6.0482 1.7019 -1.2074 35 1 5.8892 0.1410 -0.3668 36 1 5.8153 0.5498 -3.3908 37 1 7.1869 -0.1060 -2.4655 38 1 5.6564 -1.0111 -2.5502 39 1 4.3920 1.6049 2.5207 40 1 3.1777 2.8335 2.9912 41 1 6.2122 2.8913 3.4404 42 1 4.9021 3.2341 4.6190 43 1 8.3590 6.2893 5.9135 44 1 4.3080 5.4614 1.2409 45 1 5.9408 4.7572 1.0773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397665443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:16 Heat of formation + Delta-G solvation = -88.003929 kcal Electronic energy + Delta-G solvation = -21355.829539 eV Core-core repulsion = 18371.142817 eV Total energy + Delta-G solvation = -2984.686722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32204 -38.87807 -37.21621 -35.03124 -34.87694 -32.83075 -31.50982 -30.18727 -27.38463 -27.18793 -24.79284 -23.58329 -22.41319 -21.90215 -21.31896 -19.87654 -19.04420 -18.31442 -16.92537 -16.47784 -16.41358 -16.04425 -15.90770 -15.32076 -14.85177 -14.58273 -14.51371 -14.34178 -13.89779 -13.72543 -13.61237 -13.45258 -13.22782 -12.92193 -12.80505 -12.71724 -12.64489 -12.15833 -12.06569 -11.94837 -11.90352 -11.69504 -11.50800 -11.50040 -11.43135 -11.23355 -11.19370 -10.74219 -10.63422 -9.61981 -8.30217 -6.37765 1.35436 1.41282 1.51410 1.64172 2.06373 2.35452 3.04000 3.46194 3.68624 3.86514 3.89930 4.02469 4.15558 4.18994 4.27492 4.30673 4.33626 4.40360 4.45337 4.58693 4.63937 4.71062 4.74407 4.81467 4.88298 4.89877 4.94891 4.97460 5.07055 5.09742 5.11922 5.14080 5.20888 5.24474 5.32139 5.38610 5.41176 5.45707 5.53588 5.56724 5.63708 6.24353 6.63761 6.67292 7.18558 7.28108 8.86844 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020639 B = 0.004997 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.319239 B = 5601.835232 C = 6318.568737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.103 4.103 4 C -0.096 4.096 5 C -0.099 4.099 6 C -0.130 4.130 7 C -0.145 4.145 8 C 0.523 3.477 9 O -0.594 6.594 10 N -0.617 5.617 11 C 0.104 3.896 12 C -0.140 4.140 13 C 0.007 3.993 14 H 0.048 0.952 15 C -0.524 4.524 16 H 0.024 0.976 17 C 0.014 3.986 18 N -0.951 5.951 19 Si 0.950 3.050 20 H -0.253 1.253 21 H -0.298 1.298 22 H -0.236 1.236 23 C 0.128 3.872 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.267 0.733 44 H 0.047 0.953 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.499 -18.587 -6.711 24.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.141 4.141 4 C -0.117 4.117 5 C -0.136 4.136 6 C -0.168 4.168 7 C -0.203 4.203 8 C 0.313 3.687 9 O -0.475 6.475 10 N -0.349 5.349 11 C -0.017 4.017 12 C -0.178 4.178 13 C -0.012 4.012 14 H 0.066 0.934 15 C -0.562 4.562 16 H 0.043 0.957 17 C -0.184 4.184 18 N -0.591 5.591 19 Si 0.774 3.226 20 H -0.178 1.178 21 H -0.225 1.225 22 H -0.159 1.159 23 C 0.005 3.995 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -14.340 -18.204 -7.182 24.261 hybrid contribution 0.607 0.967 0.573 1.278 sum -13.734 -17.236 -6.609 23.008 Atomic orbital electron populations 1.21777 0.95395 1.02216 1.01696 1.21558 0.96142 0.94423 1.03338 1.21506 0.90959 0.99327 1.02289 1.21491 0.98163 0.90239 1.01816 1.21567 0.95111 1.01742 0.95194 1.21580 0.96102 0.99408 0.99718 1.21709 1.00978 1.00801 0.96764 1.21201 0.76399 0.90359 0.80691 1.90631 1.56334 1.62673 1.37837 1.48829 1.61122 1.17884 1.07092 1.22555 0.99783 0.97806 0.81577 1.23132 0.99142 0.96685 0.98850 1.20102 0.96075 0.93954 0.91058 0.93405 1.21122 1.04804 1.37279 0.93009 0.95724 1.25948 0.95973 0.94789 1.01649 1.70065 1.23238 1.45048 1.20751 0.85820 0.80777 0.78966 0.77075 1.17806 1.22536 1.15926 1.21750 0.95807 0.84420 0.97535 0.92842 0.93182 0.91574 0.90734 0.90499 0.91637 0.92598 0.87144 0.87767 0.92798 0.95687 0.91088 0.93363 0.92842 0.90637 0.87732 0.89186 0.91770 0.90296 0.92363 0.93427 0.94823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.51 5.70 30.60 0.17 -1.33 16 3 C -0.10 -1.94 4.66 30.59 0.14 -1.80 16 4 C -0.10 -2.19 1.82 -11.54 -0.02 -2.21 16 5 C -0.10 -2.12 4.32 30.59 0.13 -1.98 16 6 C -0.13 -3.09 5.67 30.60 0.17 -2.91 16 7 C -0.15 -2.80 9.91 71.98 0.71 -2.09 16 8 C 0.52 17.85 5.99 87.66 0.53 18.37 16 9 O -0.59 -25.44 16.29 -3.04 -0.05 -25.49 16 10 N -0.62 -21.79 3.33 -811.81 -2.70 -24.49 16 11 C 0.10 2.91 6.72 86.85 0.58 3.49 16 12 C -0.14 -5.09 5.19 31.98 0.17 -4.93 16 13 C 0.01 0.34 2.34 -10.35 -0.02 0.31 16 14 H 0.05 2.09 7.37 -2.39 -0.02 2.07 16 15 C -0.52 -29.71 9.08 25.60 0.23 -29.47 16 16 H 0.02 1.59 7.82 -2.91 -0.02 1.57 16 17 C 0.01 0.77 5.46 84.65 0.46 1.23 16 18 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 19 Si 0.95 41.42 24.50 68.60 1.68 43.10 16 20 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.24 -9.15 6.47 99.48 0.64 -8.50 16 23 C 0.13 5.56 6.46 86.73 0.56 6.12 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.85 6.45 -2.39 -0.02 0.84 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.11 2.04 6.39 -2.39 -0.02 2.03 16 32 H 0.10 1.55 6.33 -2.39 -0.02 1.53 16 33 H 0.05 1.40 7.66 -2.38 -0.02 1.38 16 34 H 0.02 0.78 7.40 -2.38 -0.02 0.76 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 2.18 6.62 -2.39 -0.02 2.16 16 40 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.06 2.52 8.04 -2.39 -0.02 2.50 16 42 H 0.08 2.65 5.14 -2.39 -0.01 2.63 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.03 1.65 7.66 -2.39 -0.02 1.64 16 Total: -1.00 -71.41 344.89 4.63 -66.78 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.87 Total: 17.07 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.53 Total: -18.35 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -2.40 Total: -83.12 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.68 Total: 43.10 kcal Total: -71.41 4.63 -66.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.219 kcal (2) G-P(sol) polarization free energy of solvation -71.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds