Wall clock time and date at job start Mon Mar 30 2020 07:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46535 * 2 1 4 4 C 1.53006 * 109.46678 * 185.23462 * 3 2 1 5 5 C 1.52999 * 109.47104 * 304.66352 * 4 3 2 6 6 C 1.52998 * 109.47009 * 294.33194 * 5 4 3 7 7 C 1.52998 * 109.47444 * 185.14514 * 6 5 4 8 8 C 1.50700 * 109.46935 * 64.66459 * 4 3 2 9 9 O 1.21280 * 119.99740 * 256.81714 * 8 4 3 10 10 N 1.34773 * 120.00413 * 76.82018 * 8 4 3 11 11 C 1.47426 * 125.64765 * 354.47727 * 10 8 4 12 12 C 1.54908 * 104.83497 * 204.16474 * 11 10 8 13 13 C 1.55154 * 101.58266 * 322.99390 * 12 11 10 14 14 H 1.08997 * 110.87328 * 277.06560 * 13 12 11 15 15 C 1.50701 * 110.71764 * 153.86134 * 13 12 11 16 16 H 1.08003 * 120.00250 * 246.47324 * 15 13 12 17 17 C 1.37871 * 119.99764 * 66.48256 * 15 13 12 18 18 N 1.31512 * 120.00283 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99826 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47211 * 180.02562 * 19 17 15 21 21 H 1.48496 * 109.47169 * 59.99402 * 19 17 15 22 22 H 1.48509 * 109.47079 * 299.99205 * 19 17 15 23 23 C 1.47020 * 125.65219 * 174.52818 * 10 8 4 24 24 H 1.08996 * 109.47618 * 299.99434 * 1 2 3 25 25 H 1.09000 * 109.47439 * 60.00158 * 1 2 3 26 26 H 1.09013 * 109.46665 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47138 * 240.00340 * 2 1 3 28 28 H 1.09000 * 109.47439 * 119.99841 * 2 1 3 29 29 H 1.08995 * 109.47040 * 65.23998 * 3 2 1 30 30 H 1.09001 * 109.47241 * 305.23366 * 3 2 1 31 31 H 1.08998 * 109.46816 * 184.65936 * 4 3 2 32 32 H 1.08993 * 109.47286 * 54.33282 * 5 4 3 33 33 H 1.09002 * 109.46619 * 174.33638 * 5 4 3 34 34 H 1.09003 * 109.47147 * 305.14531 * 6 5 4 35 35 H 1.09004 * 109.47250 * 65.14426 * 6 5 4 36 36 H 1.09004 * 109.46969 * 59.99739 * 7 6 5 37 37 H 1.08994 * 109.47600 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.46962 * 300.00129 * 7 6 5 39 39 H 1.09004 * 110.36741 * 323.01060 * 11 10 8 40 40 H 1.09000 * 110.36314 * 85.32725 * 11 10 8 41 41 H 1.08994 * 111.00478 * 204.91596 * 12 11 10 42 42 H 1.09009 * 110.99950 * 81.06594 * 12 11 10 43 43 H 0.96991 * 119.99913 * 0.02562 * 18 17 15 44 44 H 1.09000 * 109.88507 * 59.48252 * 23 10 8 45 45 H 1.09008 * 109.88120 * 298.31688 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5643 1.4446 -0.1316 5 6 4.1734 0.5892 0.9811 6 6 3.8977 1.2436 2.3363 7 6 4.6146 0.4589 3.4369 8 6 3.9534 0.8766 -1.4721 9 8 4.3777 -0.2568 -1.5503 10 7 3.8301 1.6282 -2.5840 11 6 3.2253 2.9710 -2.6507 12 6 2.7628 3.1252 -4.1211 13 6 3.9028 2.4001 -4.8839 14 1 4.7533 3.0649 -5.0346 15 6 3.4061 1.8655 -6.2025 16 1 3.3530 0.7995 -6.3675 17 6 3.0197 2.7373 -7.1982 18 7 3.0841 4.0354 -6.9972 19 14 2.4047 2.0747 -8.8329 20 1 2.0553 3.2081 -9.7265 21 1 1.2019 1.2341 -8.6053 22 1 3.4687 1.2553 -9.4667 23 6 4.2753 1.2442 -3.9316 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7552 1.9285 0.9332 30 1 1.6020 1.9827 -0.8394 31 1 3.9347 2.4664 -0.0486 32 1 3.7275 -0.4051 0.9603 33 1 5.2497 0.5081 0.8290 34 1 4.2634 2.2704 2.3251 35 1 2.8248 1.2421 2.5290 36 1 5.6874 0.4604 3.2442 37 1 4.4178 0.9248 4.4024 38 1 4.2489 -0.5679 3.4481 39 1 2.3720 3.0368 -1.9756 40 1 3.9649 3.7327 -2.4039 41 1 2.7090 4.1759 -4.4056 42 1 1.8062 2.6284 -4.2838 43 1 3.4038 4.3795 -6.1485 44 1 3.7697 0.3301 -4.2427 45 1 5.3548 1.0933 -3.9364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397665445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:21 Heat of formation + Delta-G solvation = -77.230238 kcal Electronic energy + Delta-G solvation = -21445.225343 eV Core-core repulsion = 18461.005803 eV Total energy + Delta-G solvation = -2984.219540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00131 -37.44762 -36.18593 -33.83847 -33.29485 -31.02846 -29.84292 -28.49025 -26.33583 -24.99158 -23.67727 -22.45173 -22.04491 -20.28964 -19.74744 -18.43623 -17.04489 -16.46094 -15.93001 -15.69708 -14.87084 -14.83085 -14.04148 -13.87851 -13.78033 -13.39018 -13.18885 -12.89281 -12.62468 -12.28411 -12.06497 -12.02445 -11.90646 -11.75833 -11.59174 -11.35894 -11.00492 -10.97411 -10.94462 -10.74639 -10.69393 -10.57994 -10.30631 -10.14407 -9.94667 -9.75201 -9.24180 -8.61069 -8.44325 -8.05270 -6.42563 -4.15461 3.03124 3.41462 3.42425 3.50296 3.61379 4.48030 4.63992 4.66281 4.82973 4.96934 5.03162 5.10296 5.16474 5.26791 5.39296 5.43319 5.49860 5.57264 5.62950 5.66459 5.71800 5.75860 5.80926 5.81758 5.86884 5.89403 6.02457 6.05320 6.14494 6.17283 6.23746 6.27893 6.33428 6.43996 6.50959 6.69643 6.77915 6.88853 7.07484 7.45738 8.08111 8.09770 8.35168 8.61282 8.78748 9.55699 10.95703 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028986 B = 0.004308 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.737448 B = 6497.339553 C = 6772.277920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.112 4.112 4 C -0.104 4.104 5 C -0.102 4.102 6 C -0.124 4.124 7 C -0.152 4.152 8 C 0.527 3.473 9 O -0.553 6.553 10 N -0.611 5.611 11 C 0.092 3.908 12 C -0.125 4.125 13 C 0.028 3.972 14 H 0.032 0.968 15 C -0.594 4.594 16 H 0.052 0.948 17 C 0.023 3.977 18 N -0.910 5.910 19 Si 1.068 2.932 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.287 1.287 23 C 0.118 3.882 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.271 0.729 44 H 0.062 0.938 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -2.269 17.159 17.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.150 4.150 4 C -0.125 4.125 5 C -0.140 4.140 6 C -0.162 4.162 7 C -0.209 4.209 8 C 0.315 3.685 9 O -0.432 6.432 10 N -0.344 5.344 11 C -0.031 4.031 12 C -0.163 4.163 13 C 0.009 3.991 14 H 0.050 0.950 15 C -0.632 4.632 16 H 0.071 0.929 17 C -0.182 4.182 18 N -0.545 5.545 19 Si 0.896 3.104 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.214 1.214 23 C -0.003 4.003 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.447 -2.452 15.680 16.058 hybrid contribution 0.620 -0.332 1.455 1.616 sum -1.826 -2.784 17.135 17.455 Atomic orbital electron populations 1.21765 0.95941 1.01500 1.01595 1.21619 0.95599 0.96568 1.02788 1.21645 0.92768 0.97927 1.02610 1.21353 0.97541 1.00874 0.92760 1.21484 1.01054 0.99385 0.92083 1.21573 1.00694 0.99407 0.94502 1.21760 1.00627 1.00346 0.98156 1.20215 0.78069 0.85243 0.84932 1.90646 1.47500 1.18280 1.86762 1.48714 1.59023 1.18137 1.08533 1.22555 0.96653 0.83701 1.00173 1.22995 1.00923 1.01467 0.90942 1.19870 0.93797 0.92012 0.93418 0.94967 1.21872 1.48079 0.94761 0.98471 0.92945 1.25794 0.94793 0.94479 1.03096 1.70822 1.43351 1.12752 1.27619 0.83553 0.76435 0.75274 0.75162 1.20758 1.21411 1.21375 1.22169 0.97761 1.00234 0.80184 0.92994 0.92682 0.92892 0.91502 0.91613 0.90944 0.91118 0.89385 0.90581 0.91743 0.92151 0.91795 0.92780 0.92954 0.92750 0.91563 0.92378 0.90962 0.91476 0.91782 0.91958 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.13 -1.60 5.18 -26.73 -0.14 -1.74 16 3 C -0.11 -1.32 4.49 -26.73 -0.12 -1.44 16 4 C -0.10 -1.39 1.85 -91.77 -0.17 -1.56 16 5 C -0.10 -1.25 3.71 -26.73 -0.10 -1.35 16 6 C -0.12 -1.17 5.58 -26.73 -0.15 -1.31 16 7 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 8 C 0.53 9.55 6.01 -10.99 -0.07 9.49 16 9 O -0.55 -11.81 16.18 5.56 0.09 -11.72 16 10 N -0.61 -11.71 3.33 -170.52 -0.57 -12.28 16 11 C 0.09 1.57 6.43 -2.53 -0.02 1.55 16 12 C -0.12 -2.62 5.87 -24.58 -0.14 -2.76 16 13 C 0.03 0.67 2.43 -89.94 -0.22 0.45 16 14 H 0.03 0.82 7.91 -51.93 -0.41 0.40 16 15 C -0.59 -16.07 8.47 -34.44 -0.29 -16.36 16 16 H 0.05 1.44 7.53 -52.48 -0.40 1.04 16 17 C 0.02 0.63 5.36 -17.82 -0.10 0.53 16 18 N -0.91 -25.98 13.49 55.43 0.75 -25.23 16 19 Si 1.07 24.48 29.90 -169.99 -5.08 19.40 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.12 2.62 6.46 -3.06 -0.02 2.60 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.07 1.04 7.01 -51.93 -0.36 0.68 16 28 H 0.07 0.76 6.54 -51.93 -0.34 0.42 16 29 H 0.07 0.70 6.93 -51.93 -0.36 0.34 16 30 H 0.07 0.90 5.80 -51.93 -0.30 0.59 16 31 H 0.09 1.07 7.89 -51.93 -0.41 0.66 16 32 H 0.08 1.00 6.10 -51.93 -0.32 0.68 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.56 6.95 -51.93 -0.36 0.20 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.97 5.48 -51.93 -0.28 0.68 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.54 6.78 -51.93 -0.35 1.19 16 42 H 0.07 1.49 8.04 -51.92 -0.42 1.08 16 43 H 0.27 7.53 5.60 -40.82 -0.23 7.31 16 44 H 0.06 1.48 7.63 -51.93 -0.40 1.08 16 45 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -29.89 343.50 -8.39 -38.28 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.96 Total: 0.47 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -0.79 Total: -14.09 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.18 Total: -37.51 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.89 -8.39 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.955 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds