Wall clock time and date at job start Mon Mar 30 2020 07:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46535 * 2 1 4 4 C 1.53006 * 109.46678 * 185.23462 * 3 2 1 5 5 C 1.52999 * 109.47104 * 304.66352 * 4 3 2 6 6 C 1.52998 * 109.47009 * 294.33194 * 5 4 3 7 7 C 1.52998 * 109.47444 * 185.14514 * 6 5 4 8 8 C 1.50700 * 109.46935 * 64.66459 * 4 3 2 9 9 O 1.21280 * 119.99740 * 256.81714 * 8 4 3 10 10 N 1.34773 * 120.00413 * 76.82018 * 8 4 3 11 11 C 1.47426 * 125.64765 * 354.47727 * 10 8 4 12 12 C 1.54908 * 104.83497 * 204.16474 * 11 10 8 13 13 C 1.55154 * 101.58266 * 322.99390 * 12 11 10 14 14 H 1.08997 * 110.87328 * 277.06560 * 13 12 11 15 15 C 1.50701 * 110.71764 * 153.86134 * 13 12 11 16 16 H 1.08003 * 120.00250 * 246.47324 * 15 13 12 17 17 C 1.37871 * 119.99764 * 66.48256 * 15 13 12 18 18 N 1.31512 * 120.00283 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99826 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47211 * 180.02562 * 19 17 15 21 21 H 1.48496 * 109.47169 * 59.99402 * 19 17 15 22 22 H 1.48509 * 109.47079 * 299.99205 * 19 17 15 23 23 C 1.47020 * 125.65219 * 174.52818 * 10 8 4 24 24 H 1.08996 * 109.47618 * 299.99434 * 1 2 3 25 25 H 1.09000 * 109.47439 * 60.00158 * 1 2 3 26 26 H 1.09013 * 109.46665 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47138 * 240.00340 * 2 1 3 28 28 H 1.09000 * 109.47439 * 119.99841 * 2 1 3 29 29 H 1.08995 * 109.47040 * 65.23998 * 3 2 1 30 30 H 1.09001 * 109.47241 * 305.23366 * 3 2 1 31 31 H 1.08998 * 109.46816 * 184.65936 * 4 3 2 32 32 H 1.08993 * 109.47286 * 54.33282 * 5 4 3 33 33 H 1.09002 * 109.46619 * 174.33638 * 5 4 3 34 34 H 1.09003 * 109.47147 * 305.14531 * 6 5 4 35 35 H 1.09004 * 109.47250 * 65.14426 * 6 5 4 36 36 H 1.09004 * 109.46969 * 59.99739 * 7 6 5 37 37 H 1.08994 * 109.47600 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.46962 * 300.00129 * 7 6 5 39 39 H 1.09004 * 110.36741 * 323.01060 * 11 10 8 40 40 H 1.09000 * 110.36314 * 85.32725 * 11 10 8 41 41 H 1.08994 * 111.00478 * 204.91596 * 12 11 10 42 42 H 1.09009 * 110.99950 * 81.06594 * 12 11 10 43 43 H 0.96991 * 119.99913 * 0.02562 * 18 17 15 44 44 H 1.09000 * 109.88507 * 59.48252 * 23 10 8 45 45 H 1.09008 * 109.88120 * 298.31688 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5643 1.4446 -0.1316 5 6 4.1734 0.5892 0.9811 6 6 3.8977 1.2436 2.3363 7 6 4.6146 0.4589 3.4369 8 6 3.9534 0.8766 -1.4721 9 8 4.3777 -0.2568 -1.5503 10 7 3.8301 1.6282 -2.5840 11 6 3.2253 2.9710 -2.6507 12 6 2.7628 3.1252 -4.1211 13 6 3.9028 2.4001 -4.8839 14 1 4.7533 3.0649 -5.0346 15 6 3.4061 1.8655 -6.2025 16 1 3.3530 0.7995 -6.3675 17 6 3.0197 2.7373 -7.1982 18 7 3.0841 4.0354 -6.9972 19 14 2.4047 2.0747 -8.8329 20 1 2.0553 3.2081 -9.7265 21 1 1.2019 1.2341 -8.6053 22 1 3.4687 1.2553 -9.4667 23 6 4.2753 1.2442 -3.9316 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7552 1.9285 0.9332 30 1 1.6020 1.9827 -0.8394 31 1 3.9347 2.4664 -0.0486 32 1 3.7275 -0.4051 0.9603 33 1 5.2497 0.5081 0.8290 34 1 4.2634 2.2704 2.3251 35 1 2.8248 1.2421 2.5290 36 1 5.6874 0.4604 3.2442 37 1 4.4178 0.9248 4.4024 38 1 4.2489 -0.5679 3.4481 39 1 2.3720 3.0368 -1.9756 40 1 3.9649 3.7327 -2.4039 41 1 2.7090 4.1759 -4.4056 42 1 1.8062 2.6284 -4.2838 43 1 3.4038 4.3795 -6.1485 44 1 3.7697 0.3301 -4.2427 45 1 5.3548 1.0933 -3.9364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397665445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:20 Heat of formation + Delta-G solvation = -93.074152 kcal Electronic energy + Delta-G solvation = -21445.912387 eV Core-core repulsion = 18461.005803 eV Total energy + Delta-G solvation = -2984.906583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.42989 -38.96231 -37.46469 -35.30096 -34.61569 -32.36432 -31.27981 -30.16615 -27.24703 -26.70728 -25.19127 -23.78574 -22.95747 -21.89618 -21.09338 -19.81754 -18.95781 -17.93283 -17.39482 -16.76661 -16.26239 -16.14154 -15.66426 -15.06860 -14.80139 -14.62700 -14.44365 -14.25185 -14.03676 -13.85399 -13.66647 -13.32597 -13.02327 -12.89758 -12.83657 -12.66250 -12.53793 -12.41566 -11.95821 -11.86049 -11.82182 -11.77906 -11.68228 -11.63000 -11.49891 -11.21040 -10.72205 -10.59941 -10.50584 -9.66412 -8.61388 -6.34778 1.54459 1.59649 1.60464 1.80512 2.02394 2.56297 3.16938 3.43218 3.69366 3.83357 3.88759 3.99696 4.12698 4.16021 4.24325 4.27176 4.30294 4.37961 4.49105 4.52471 4.61402 4.62852 4.70820 4.80163 4.82367 4.87739 4.94302 4.97751 5.04374 5.08045 5.12324 5.19822 5.20286 5.24595 5.30604 5.34376 5.40821 5.43456 5.54585 5.56339 6.02965 6.16627 6.58087 6.65081 7.13010 7.42420 8.78708 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.028986 B = 0.004308 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.737448 B = 6497.339553 C = 6772.277920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.095 4.095 5 C -0.099 4.099 6 C -0.117 4.117 7 C -0.153 4.153 8 C 0.521 3.479 9 O -0.592 6.592 10 N -0.616 5.616 11 C 0.103 3.897 12 C -0.116 4.116 13 C 0.021 3.979 14 H 0.015 0.985 15 C -0.612 4.612 16 H 0.039 0.961 17 C -0.019 4.019 18 N -0.929 5.929 19 Si 1.110 2.890 20 H -0.280 1.280 21 H -0.275 1.275 22 H -0.276 1.276 23 C 0.128 3.872 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.024 0.976 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.266 0.734 44 H 0.036 0.964 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 -1.250 19.380 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.145 4.145 4 C -0.116 4.116 5 C -0.137 4.137 6 C -0.154 4.154 7 C -0.210 4.210 8 C 0.312 3.688 9 O -0.473 6.473 10 N -0.349 5.349 11 C -0.019 4.019 12 C -0.154 4.154 13 C 0.002 3.998 14 H 0.033 0.967 15 C -0.650 4.650 16 H 0.057 0.943 17 C -0.219 4.219 18 N -0.566 5.566 19 Si 0.932 3.068 20 H -0.206 1.206 21 H -0.200 1.200 22 H -0.202 1.202 23 C 0.005 3.995 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.545 -1.425 17.934 18.336 hybrid contribution 1.014 -0.717 0.774 1.463 sum -2.532 -2.142 18.708 18.999 Atomic orbital electron populations 1.21744 0.94584 1.01875 1.02283 1.21593 0.96780 0.96896 1.01218 1.21687 0.91084 0.97509 1.04225 1.21445 0.98926 1.01767 0.89461 1.21463 0.99719 0.98939 0.93537 1.21542 1.01748 0.99681 0.92462 1.21772 1.00214 1.00312 0.98728 1.21254 0.76756 0.84620 0.86123 1.90624 1.49088 1.20184 1.87424 1.48803 1.59375 1.19132 1.07568 1.22600 0.98378 0.82994 0.97914 1.22765 0.98862 1.00389 0.93432 1.19801 0.94240 0.92559 0.93182 0.96662 1.22179 1.48249 0.94286 1.00311 0.94287 1.27032 0.94532 0.94260 1.06072 1.70909 1.44651 1.13381 1.27645 0.83004 0.76785 0.75107 0.71880 1.20551 1.20019 1.20163 1.21797 0.97091 0.98535 0.82091 0.90573 0.93613 0.92822 0.95662 0.90675 0.87255 0.91666 0.87046 0.91991 0.93463 0.90949 0.90334 0.93350 0.91344 0.93077 0.88029 0.90057 0.91314 0.93157 0.92347 0.94505 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.91 71.98 0.71 -2.17 16 2 C -0.13 -2.97 5.18 30.60 0.16 -2.81 16 3 C -0.11 -2.19 4.49 30.60 0.14 -2.06 16 4 C -0.09 -2.30 1.85 -11.54 -0.02 -2.32 16 5 C -0.10 -2.23 3.71 30.59 0.11 -2.11 16 6 C -0.12 -1.78 5.58 30.59 0.17 -1.61 16 7 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 8 C 0.52 18.71 6.01 87.66 0.53 19.23 16 9 O -0.59 -25.95 16.18 -3.03 -0.05 -26.00 16 10 N -0.62 -23.42 3.33 -811.78 -2.70 -26.13 16 11 C 0.10 3.32 6.43 86.85 0.56 3.87 16 12 C -0.12 -4.87 5.87 31.98 0.19 -4.68 16 13 C 0.02 1.05 2.43 -10.35 -0.03 1.02 16 14 H 0.02 0.80 7.91 -2.39 -0.02 0.78 16 15 C -0.61 -34.11 8.47 25.60 0.22 -33.89 16 16 H 0.04 2.22 7.53 -2.91 -0.02 2.20 16 17 C -0.02 -1.06 5.36 84.65 0.45 -0.61 16 18 N -0.93 -53.59 13.49 21.44 0.29 -53.30 16 19 Si 1.11 49.48 29.90 68.60 2.05 51.53 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 23 C 0.13 5.87 6.46 86.73 0.56 6.43 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.02 0.79 7.01 -2.39 -0.02 0.77 16 28 H 0.07 1.59 6.54 -2.39 -0.02 1.58 16 29 H 0.11 1.51 6.93 -2.39 -0.02 1.50 16 30 H 0.06 1.43 5.80 -2.39 -0.01 1.41 16 31 H 0.11 2.24 7.89 -2.39 -0.02 2.22 16 32 H 0.06 1.57 6.10 -2.39 -0.01 1.55 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.00 6.95 -2.39 -0.02 0.98 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 2.61 5.48 -2.38 -0.01 2.60 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.07 2.93 6.78 -2.39 -0.02 2.91 16 42 H 0.05 2.25 8.04 -2.38 -0.02 2.24 16 43 H 0.27 15.03 5.60 -92.72 -0.52 14.52 16 44 H 0.04 1.84 7.63 -2.39 -0.02 1.82 16 45 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -67.16 343.50 5.24 -61.92 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.19 Total: 15.17 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.46 Total: -23.19 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.41 Total: -79.43 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -67.16 5.24 -61.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397665445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.158 kcal (2) G-P(sol) polarization free energy of solvation -67.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds