Wall clock time and date at job start Mon Mar 30 2020 07:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 C 1.53005 * 109.47032 * 240.00164 * 2 1 3 5 5 C 1.50702 * 109.46665 * 195.89583 * 4 2 1 6 6 O 1.21280 * 119.99907 * 266.33962 * 5 4 2 7 7 N 1.34778 * 119.99833 * 86.35053 * 5 4 2 8 8 C 1.47419 * 125.64593 * 5.24105 * 7 5 4 9 9 C 1.55134 * 104.72143 * 155.82153 * 8 7 5 10 10 C 1.55166 * 101.48418 * 37.29331 * 9 8 7 11 11 H 1.08995 * 110.86892 * 82.76678 * 10 9 8 12 12 C 1.50701 * 110.71817 * 205.97336 * 10 9 8 13 13 H 1.07998 * 120.00200 * 113.52366 * 12 10 9 14 14 C 1.37881 * 119.99887 * 293.52003 * 12 10 9 15 15 N 1.31512 * 120.00326 * 180.02562 * 14 12 10 16 16 Si 1.86797 * 119.99951 * 0.02562 * 14 12 10 17 17 H 1.48496 * 109.47344 * 89.99901 * 16 14 12 18 18 H 1.48502 * 109.47303 * 210.00022 * 16 14 12 19 19 H 1.48507 * 109.47217 * 330.00050 * 16 14 12 20 20 C 1.47019 * 125.64592 * 185.55384 * 7 5 4 21 21 C 1.52998 * 109.46871 * 75.89887 * 4 2 1 22 22 C 1.53003 * 109.47039 * 182.80363 * 21 4 2 23 23 C 1.53006 * 109.47298 * 302.80048 * 21 4 2 24 24 H 1.09005 * 109.46962 * 161.76442 * 1 2 3 25 25 H 1.08998 * 109.47661 * 41.76246 * 1 2 3 26 26 H 1.09001 * 109.46931 * 281.75934 * 1 2 3 27 27 H 1.08997 * 109.47602 * 119.99882 * 2 1 3 28 28 H 1.09005 * 109.47040 * 186.95371 * 3 2 1 29 29 H 1.08999 * 109.47238 * 306.95122 * 3 2 1 30 30 H 1.08992 * 109.47084 * 66.95337 * 3 2 1 31 31 H 1.08997 * 109.47198 * 315.89554 * 4 2 1 32 32 H 1.09001 * 110.37048 * 274.74205 * 8 7 5 33 33 H 1.08997 * 110.37271 * 37.07204 * 8 7 5 34 34 H 1.08997 * 111.19325 * 279.19370 * 9 8 7 35 35 H 1.09001 * 110.94340 * 155.28572 * 9 8 7 36 36 H 0.96995 * 120.00387 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.88096 * 300.43352 * 20 7 5 38 38 H 1.08995 * 109.88473 * 61.44832 * 20 7 5 39 39 H 1.09001 * 109.47287 * 62.80451 * 21 4 2 40 40 H 1.09003 * 109.47232 * 300.00263 * 22 21 4 41 41 H 1.09001 * 109.47009 * 59.99918 * 22 21 4 42 42 H 1.08995 * 109.47616 * 180.02562 * 22 21 4 43 43 H 1.08994 * 109.46764 * 79.06865 * 23 21 4 44 44 H 1.08994 * 109.47075 * 199.07143 * 23 21 4 45 45 H 1.08998 * 109.46569 * 319.06988 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.4958 -1.0673 -1.0703 6 8 4.3530 -0.3137 -1.4804 7 7 3.8450 -2.2143 -0.4548 8 6 2.9150 -3.2671 -0.0079 9 6 3.7736 -4.5584 0.0373 10 6 5.1301 -4.0095 0.5531 11 1 5.1240 -3.9175 1.6392 12 6 6.2676 -4.8885 0.1007 13 1 6.9979 -4.5092 -0.5987 14 6 6.3759 -6.1769 0.5797 15 7 7.3688 -6.9438 0.1853 16 14 5.1123 -6.8331 1.7888 17 1 3.9969 -7.4691 1.0429 18 1 5.7513 -7.8383 2.6758 19 1 4.5842 -5.7135 2.6093 20 6 5.2160 -2.6197 -0.1122 21 6 1.8786 0.1914 -2.4666 22 6 2.3234 -0.5548 -3.7261 23 6 0.4106 0.5994 -2.6072 24 1 -0.3633 -0.9761 -0.3216 25 1 -0.3634 0.7665 -0.6844 26 1 -0.3633 0.2094 1.0061 27 1 1.8934 -0.5138 0.8899 28 1 3.1229 1.4451 -0.1244 29 1 1.5786 1.9910 -0.8212 30 1 1.7818 1.9192 0.9456 31 1 1.4654 -1.6349 -1.4014 32 1 2.5250 -3.0334 0.9828 33 1 2.0984 -3.3798 -0.7210 34 1 3.8810 -4.9951 -0.9556 35 1 3.3534 -5.2814 0.7365 36 1 7.4452 -7.8500 0.5225 37 1 5.8221 -2.6783 -1.0162 38 1 5.6529 -1.9009 0.5809 39 1 2.4925 1.0827 -2.3365 40 1 3.3691 -0.8455 -3.6259 41 1 1.7094 -1.4460 -3.8562 42 1 2.2089 0.0954 -4.5933 43 1 0.1862 1.3978 -1.9001 44 1 0.2269 0.9508 -3.6225 45 1 -0.2267 -0.2601 -2.3992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397696043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:25 Heat of formation + Delta-G solvation = -49.532878 kcal Electronic energy + Delta-G solvation = -21955.434676 eV Core-core repulsion = 18972.416184 eV Total energy + Delta-G solvation = -2983.018492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32765 -37.94457 -36.44888 -33.18826 -32.90655 -30.97776 -28.87722 -28.28680 -27.30103 -26.56713 -24.82850 -22.45753 -21.11766 -20.36936 -19.43424 -18.36469 -17.20380 -16.71442 -15.84994 -15.44862 -15.24286 -14.39392 -14.34124 -13.87184 -13.49399 -12.97052 -12.92423 -12.86594 -12.64480 -12.52669 -12.45485 -12.05275 -11.96279 -11.92257 -11.66439 -11.50849 -11.16916 -11.01036 -10.94989 -10.87467 -10.82826 -10.49084 -10.18957 -10.00606 -9.94181 -9.67558 -9.22524 -9.16987 -8.64175 -8.09402 -6.14880 -4.15659 3.01020 3.20587 3.29694 3.31394 3.46772 4.33395 4.55171 4.68577 4.74868 4.95728 5.07980 5.11485 5.17091 5.24462 5.36890 5.43914 5.52265 5.57644 5.63575 5.66874 5.69614 5.72669 5.79577 5.82928 5.87372 5.92264 5.93889 6.01434 6.08944 6.14582 6.24128 6.31820 6.41011 6.43073 6.44558 6.56292 6.66273 6.75748 6.92594 7.33082 7.63317 8.04353 8.42563 8.60135 8.88594 9.45639 10.98040 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.004975 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.111779 B = 5626.950642 C = 5906.556014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.082 4.082 3 C -0.153 4.153 4 C -0.096 4.096 5 C 0.529 3.471 6 O -0.548 6.548 7 N -0.613 5.613 8 C 0.098 3.902 9 C -0.139 4.139 10 C 0.007 3.993 11 H 0.042 0.958 12 C -0.512 4.512 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.897 5.897 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.291 1.291 19 H -0.264 1.264 20 C 0.121 3.879 21 C -0.079 4.079 22 C -0.151 4.151 23 C -0.154 4.154 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.265 0.735 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.595 12.319 -1.357 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.101 4.101 3 C -0.210 4.210 4 C -0.117 4.117 5 C 0.317 3.683 6 O -0.426 6.426 7 N -0.346 5.346 8 C -0.025 4.025 9 C -0.178 4.178 10 C -0.012 4.012 11 H 0.060 0.940 12 C -0.550 4.550 13 H 0.095 0.905 14 C -0.128 4.128 15 N -0.535 5.535 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.218 1.218 19 H -0.189 1.189 20 C 0.000 4.000 21 C -0.098 4.098 22 C -0.208 4.208 23 C -0.211 4.211 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.054 12.598 -1.597 20.469 hybrid contribution -0.598 -0.779 0.727 1.222 sum -16.652 11.819 -0.869 20.439 Atomic orbital electron populations 1.22404 0.94704 1.02639 1.02105 1.20951 0.95975 0.96681 0.96463 1.21996 1.02267 0.95355 1.01375 1.21553 0.93385 0.99925 0.96872 1.20191 0.90915 0.79996 0.77176 1.90645 1.52342 1.49853 1.49801 1.48714 1.09698 1.18450 1.57719 1.22424 0.92806 0.88659 0.98565 1.23266 0.97391 0.94617 1.02498 1.20234 0.93576 0.91288 0.96105 0.93964 1.20902 1.09433 0.96876 1.27775 0.90510 1.24963 0.95291 0.96717 0.95857 1.69889 1.30860 1.08554 1.44166 0.86919 0.81744 0.78955 0.81748 1.20169 1.21787 1.18886 1.22096 0.81541 0.96611 0.99780 1.20988 0.96751 0.98880 0.93176 1.21896 1.02158 0.99874 0.96856 1.22341 0.96000 1.01436 1.01309 0.92569 0.90575 0.93019 0.91064 0.91772 0.91974 0.93024 0.89453 0.92148 0.91711 0.90313 0.91954 0.92501 0.91410 0.92960 0.89667 0.91908 0.93162 0.92771 0.91518 0.92970 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 7.86 37.16 0.29 -1.11 16 2 C -0.08 -0.91 2.61 -90.62 -0.24 -1.15 16 3 C -0.15 -1.70 7.97 37.16 0.30 -1.41 16 4 C -0.10 -1.23 1.22 -91.77 -0.11 -1.34 16 5 C 0.53 9.12 5.64 -10.98 -0.06 9.06 16 6 O -0.55 -11.15 15.00 5.56 0.08 -11.06 16 7 N -0.61 -11.13 3.32 -170.39 -0.57 -11.70 16 8 C 0.10 1.57 6.62 -2.41 -0.02 1.56 16 9 C -0.14 -2.72 5.46 -24.46 -0.13 -2.86 16 10 C 0.01 0.17 2.32 -89.93 -0.21 -0.04 16 11 H 0.04 0.96 7.03 -51.93 -0.37 0.59 16 12 C -0.51 -13.89 9.05 -34.44 -0.31 -14.20 16 13 H 0.08 2.29 7.77 -52.49 -0.41 1.88 16 14 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 15 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 16 Si 0.88 20.57 24.81 -169.99 -4.22 16.35 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.26 -5.85 6.46 56.52 0.36 -5.48 16 20 C 0.12 2.55 6.46 -3.07 -0.02 2.53 16 21 C -0.08 -0.93 1.57 -90.62 -0.14 -1.08 16 22 C -0.15 -1.88 8.87 37.16 0.33 -1.56 16 23 C -0.15 -1.36 7.40 37.16 0.28 -1.09 16 24 H 0.06 0.47 7.55 -51.93 -0.39 0.07 16 25 H 0.08 0.59 4.41 -51.93 -0.23 0.36 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.87 8.03 -51.93 -0.42 0.46 16 28 H 0.06 0.88 7.15 -51.93 -0.37 0.51 16 29 H 0.06 0.61 5.24 -51.93 -0.27 0.34 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.04 6.29 -51.93 -0.33 0.72 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.87 6.90 -51.93 -0.36 0.52 16 34 H 0.08 1.61 8.04 -51.93 -0.42 1.20 16 35 H 0.06 1.19 5.61 -51.93 -0.29 0.89 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 1.55 7.63 -51.93 -0.40 1.16 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.12 6.29 -51.93 -0.33 0.80 16 40 H 0.06 0.97 6.74 -51.93 -0.35 0.62 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 43 H 0.07 0.53 4.34 -51.93 -0.23 0.31 16 44 H 0.05 0.43 7.99 -51.93 -0.41 0.01 16 45 H 0.06 0.48 6.86 -51.93 -0.36 0.13 16 LS Contribution 327.30 15.07 4.93 4.93 Total: -1.00 -30.11 327.30 -6.77 -36.88 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.62 Total: 1.32 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.15 Total: -10.72 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.21 Total: -37.70 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.22 Total: 16.35 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.11 -6.77 -36.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397696043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.655 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds