Wall clock time and date at job start Mon Mar 30 2020 07:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 C 1.53005 * 109.47032 * 240.00164 * 2 1 3 5 5 C 1.50702 * 109.46665 * 195.89583 * 4 2 1 6 6 O 1.21280 * 119.99907 * 266.33962 * 5 4 2 7 7 N 1.34778 * 119.99833 * 86.35053 * 5 4 2 8 8 C 1.47419 * 125.64593 * 5.24105 * 7 5 4 9 9 C 1.55134 * 104.72143 * 155.82153 * 8 7 5 10 10 C 1.55166 * 101.48418 * 37.29331 * 9 8 7 11 11 H 1.08995 * 110.86892 * 82.76678 * 10 9 8 12 12 C 1.50701 * 110.71817 * 205.97336 * 10 9 8 13 13 H 1.07998 * 120.00200 * 113.52366 * 12 10 9 14 14 C 1.37881 * 119.99887 * 293.52003 * 12 10 9 15 15 N 1.31512 * 120.00326 * 180.02562 * 14 12 10 16 16 Si 1.86797 * 119.99951 * 0.02562 * 14 12 10 17 17 H 1.48496 * 109.47344 * 89.99901 * 16 14 12 18 18 H 1.48502 * 109.47303 * 210.00022 * 16 14 12 19 19 H 1.48507 * 109.47217 * 330.00050 * 16 14 12 20 20 C 1.47019 * 125.64592 * 185.55384 * 7 5 4 21 21 C 1.52998 * 109.46871 * 75.89887 * 4 2 1 22 22 C 1.53003 * 109.47039 * 182.80363 * 21 4 2 23 23 C 1.53006 * 109.47298 * 302.80048 * 21 4 2 24 24 H 1.09005 * 109.46962 * 161.76442 * 1 2 3 25 25 H 1.08998 * 109.47661 * 41.76246 * 1 2 3 26 26 H 1.09001 * 109.46931 * 281.75934 * 1 2 3 27 27 H 1.08997 * 109.47602 * 119.99882 * 2 1 3 28 28 H 1.09005 * 109.47040 * 186.95371 * 3 2 1 29 29 H 1.08999 * 109.47238 * 306.95122 * 3 2 1 30 30 H 1.08992 * 109.47084 * 66.95337 * 3 2 1 31 31 H 1.08997 * 109.47198 * 315.89554 * 4 2 1 32 32 H 1.09001 * 110.37048 * 274.74205 * 8 7 5 33 33 H 1.08997 * 110.37271 * 37.07204 * 8 7 5 34 34 H 1.08997 * 111.19325 * 279.19370 * 9 8 7 35 35 H 1.09001 * 110.94340 * 155.28572 * 9 8 7 36 36 H 0.96995 * 120.00387 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.88096 * 300.43352 * 20 7 5 38 38 H 1.08995 * 109.88473 * 61.44832 * 20 7 5 39 39 H 1.09001 * 109.47287 * 62.80451 * 21 4 2 40 40 H 1.09003 * 109.47232 * 300.00263 * 22 21 4 41 41 H 1.09001 * 109.47009 * 59.99918 * 22 21 4 42 42 H 1.08995 * 109.47616 * 180.02562 * 22 21 4 43 43 H 1.08994 * 109.46764 * 79.06865 * 23 21 4 44 44 H 1.08994 * 109.47075 * 199.07143 * 23 21 4 45 45 H 1.08998 * 109.46569 * 319.06988 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.4958 -1.0673 -1.0703 6 8 4.3530 -0.3137 -1.4804 7 7 3.8450 -2.2143 -0.4548 8 6 2.9150 -3.2671 -0.0079 9 6 3.7736 -4.5584 0.0373 10 6 5.1301 -4.0095 0.5531 11 1 5.1240 -3.9175 1.6392 12 6 6.2676 -4.8885 0.1007 13 1 6.9979 -4.5092 -0.5987 14 6 6.3759 -6.1769 0.5797 15 7 7.3688 -6.9438 0.1853 16 14 5.1123 -6.8331 1.7888 17 1 3.9969 -7.4691 1.0429 18 1 5.7513 -7.8383 2.6758 19 1 4.5842 -5.7135 2.6093 20 6 5.2160 -2.6197 -0.1122 21 6 1.8786 0.1914 -2.4666 22 6 2.3234 -0.5548 -3.7261 23 6 0.4106 0.5994 -2.6072 24 1 -0.3633 -0.9761 -0.3216 25 1 -0.3634 0.7665 -0.6844 26 1 -0.3633 0.2094 1.0061 27 1 1.8934 -0.5138 0.8899 28 1 3.1229 1.4451 -0.1244 29 1 1.5786 1.9910 -0.8212 30 1 1.7818 1.9192 0.9456 31 1 1.4654 -1.6349 -1.4014 32 1 2.5250 -3.0334 0.9828 33 1 2.0984 -3.3798 -0.7210 34 1 3.8810 -4.9951 -0.9556 35 1 3.3534 -5.2814 0.7365 36 1 7.4452 -7.8500 0.5225 37 1 5.8221 -2.6783 -1.0162 38 1 5.6529 -1.9009 0.5809 39 1 2.4925 1.0827 -2.3365 40 1 3.3691 -0.8455 -3.6259 41 1 1.7094 -1.4460 -3.8562 42 1 2.2089 0.0954 -4.5933 43 1 0.1862 1.3978 -1.9001 44 1 0.2269 0.9508 -3.6225 45 1 -0.2267 -0.2601 -2.3992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397696043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:24 Heat of formation + Delta-G solvation = -68.220440 kcal Electronic energy + Delta-G solvation = -21956.245030 eV Core-core repulsion = 18972.416184 eV Total energy + Delta-G solvation = -2983.828845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.58225 -39.26313 -37.81143 -34.97849 -33.96505 -32.73357 -30.30012 -29.42459 -28.23961 -27.42972 -26.60118 -23.98069 -22.00171 -21.77680 -20.95247 -19.55282 -19.09520 -18.11740 -16.97601 -16.72919 -16.52277 -16.28199 -15.53991 -15.06596 -14.83168 -14.45925 -14.34813 -14.00820 -13.91766 -13.57656 -13.42578 -13.27621 -13.21648 -12.98680 -12.87452 -12.73825 -12.65716 -12.40763 -12.10741 -11.94496 -11.86877 -11.75213 -11.59311 -11.53442 -11.33982 -11.18972 -10.78009 -10.73989 -10.59216 -9.60055 -8.30197 -6.37613 1.35573 1.40799 1.51003 1.67023 2.08037 2.35477 3.03647 3.50278 3.66933 3.82542 3.87547 4.02094 4.14233 4.21657 4.28330 4.32890 4.36537 4.42762 4.55711 4.62933 4.68873 4.74999 4.79577 4.84254 4.88848 4.91300 5.00790 5.05052 5.08133 5.11084 5.12619 5.15346 5.21379 5.25238 5.29367 5.37109 5.46181 5.55234 5.58360 5.63526 5.69014 6.24801 6.65902 6.67510 7.21441 7.28118 8.86863 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.004975 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.111779 B = 5626.950642 C = 5906.556014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.087 4.087 5 C 0.523 3.477 6 O -0.588 6.588 7 N -0.618 5.618 8 C 0.105 3.895 9 C -0.137 4.137 10 C 0.007 3.993 11 H 0.050 0.950 12 C -0.523 4.523 13 H 0.023 0.977 14 C 0.013 3.987 15 N -0.952 5.952 16 Si 0.948 3.052 17 H -0.254 1.254 18 H -0.296 1.296 19 H -0.235 1.235 20 C 0.129 3.871 21 C -0.078 4.078 22 C -0.150 4.150 23 C -0.148 4.148 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.267 0.733 37 H 0.031 0.969 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.593 12.747 -0.064 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.108 4.108 5 C 0.314 3.686 6 O -0.469 6.469 7 N -0.351 5.351 8 C -0.017 4.017 9 C -0.175 4.175 10 C -0.013 4.013 11 H 0.068 0.932 12 C -0.561 4.561 13 H 0.042 0.958 14 C -0.184 4.184 15 N -0.591 5.591 16 Si 0.771 3.229 17 H -0.179 1.179 18 H -0.223 1.223 19 H -0.158 1.158 20 C 0.006 3.994 21 C -0.097 4.097 22 C -0.207 4.207 23 C -0.204 4.204 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.087 13.050 -0.311 24.801 hybrid contribution 1.133 -0.840 0.223 1.428 sum -19.954 12.210 -0.087 23.394 Atomic orbital electron populations 1.22372 0.91877 1.03803 1.03217 1.20985 0.98123 0.95867 0.94889 1.21982 0.99995 0.96161 1.02681 1.21654 0.89615 1.01206 0.98339 1.21194 0.92815 0.78939 0.75696 1.90626 1.54081 1.51034 1.51188 1.48819 1.08586 1.19536 1.58170 1.22577 0.92277 0.85559 1.01273 1.23130 0.95904 0.96730 1.01725 1.20121 0.93748 0.91046 0.96371 0.93157 1.21128 1.10123 0.98007 1.26802 0.95816 1.25947 0.97663 0.96732 0.98033 1.70065 1.33590 1.09176 1.46313 0.85808 0.79097 0.78855 0.79144 1.17873 1.22270 1.15844 1.21734 0.83476 0.96290 0.97936 1.20991 0.98828 0.97700 0.92181 1.21894 0.99846 1.00906 0.98073 1.22305 0.93305 1.02430 1.02361 0.91397 0.89397 0.92052 0.91941 0.95351 0.90665 0.91657 0.87469 0.89167 0.88151 0.92007 0.90284 0.92372 0.95085 0.93339 0.91697 0.95892 0.91786 0.91493 0.90294 0.92116 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 7.86 71.98 0.57 -1.33 16 2 C -0.08 -1.52 2.61 -10.79 -0.03 -1.55 16 3 C -0.15 -3.08 7.97 71.98 0.57 -2.51 16 4 C -0.09 -2.01 1.22 -11.54 -0.01 -2.02 16 5 C 0.52 17.89 5.64 87.66 0.49 18.38 16 6 O -0.59 -25.00 15.00 -3.03 -0.05 -25.05 16 7 N -0.62 -22.02 3.32 -811.37 -2.70 -24.72 16 8 C 0.10 2.97 6.62 86.94 0.58 3.54 16 9 C -0.14 -5.02 5.46 32.07 0.18 -4.84 16 10 C 0.01 0.29 2.32 -10.35 -0.02 0.27 16 11 H 0.05 2.20 7.03 -2.39 -0.02 2.18 16 12 C -0.52 -29.72 9.05 25.60 0.23 -29.49 16 13 H 0.02 1.54 7.77 -2.91 -0.02 1.52 16 14 C 0.01 0.77 5.46 84.66 0.46 1.23 16 15 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 16 Si 0.95 41.51 24.81 68.60 1.70 43.21 16 17 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.24 -9.17 6.46 99.48 0.64 -8.52 16 20 C 0.13 5.62 6.46 86.73 0.56 6.18 16 21 C -0.08 -1.69 1.57 -10.79 -0.02 -1.70 16 22 C -0.15 -3.59 8.87 71.98 0.64 -2.95 16 23 C -0.15 -2.00 7.40 71.98 0.53 -1.47 16 24 H 0.07 0.71 7.55 -2.38 -0.02 0.69 16 25 H 0.09 0.87 4.41 -2.39 -0.01 0.86 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 28 H 0.03 0.77 7.15 -2.38 -0.02 0.75 16 29 H 0.07 1.30 5.24 -2.39 -0.01 1.29 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 2.07 6.29 -2.39 -0.02 2.05 16 32 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.10 2.19 6.90 -2.39 -0.02 2.17 16 34 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 35 H 0.08 2.66 5.61 -2.39 -0.01 2.64 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.03 1.54 7.63 -2.39 -0.02 1.53 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 1.68 6.29 -2.39 -0.02 1.66 16 40 H 0.02 0.71 6.74 -2.39 -0.02 0.69 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 43 H 0.08 0.90 4.34 -2.39 -0.01 0.89 16 44 H 0.06 0.75 7.99 -2.39 -0.02 0.74 16 45 H 0.07 0.82 6.86 -2.39 -0.02 0.80 16 Total: -1.00 -71.54 327.30 4.88 -66.66 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.89 Total: 17.01 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.73 Total: -18.27 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -2.40 Total: -83.57 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.70 Total: 43.21 kcal Total: -71.54 4.88 -66.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397696043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.556 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds