Wall clock time and date at job start Mon Mar 30 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47080 * 2 1 4 4 C 1.52998 * 109.47334 * 119.99785 * 2 1 3 5 5 C 1.50692 * 109.47174 * 174.51967 * 4 2 1 6 6 O 1.21288 * 120.00368 * 341.67438 * 5 4 2 7 7 N 1.34786 * 119.99901 * 161.67131 * 5 4 2 8 8 C 1.46497 * 119.99923 * 185.33565 * 7 5 4 9 9 C 1.52994 * 109.47274 * 184.68880 * 8 7 5 10 10 C 1.50708 * 115.54886 * 54.54142 * 9 8 7 11 11 H 1.07997 * 119.99567 * 215.45382 * 10 9 8 12 12 C 1.37874 * 119.99707 * 35.16821 * 10 9 8 13 13 N 1.31513 * 120.00341 * 0.37548 * 12 10 9 14 14 Si 1.86805 * 119.99785 * 180.36738 * 12 10 9 15 15 H 1.48507 * 109.46622 * 90.00532 * 14 12 10 16 16 H 1.48497 * 109.47038 * 210.00397 * 14 12 10 17 17 H 1.48499 * 109.47332 * 330.00761 * 14 12 10 18 18 C 1.52999 * 117.50285 * 200.21010 * 9 8 7 19 19 C 1.52998 * 117.50298 * 268.87310 * 9 8 7 20 20 C 1.53005 * 109.46659 * 54.52522 * 4 2 1 21 21 C 1.52997 * 109.47457 * 67.00352 * 20 4 2 22 22 C 1.53008 * 109.46945 * 187.00485 * 20 4 2 23 23 H 1.09004 * 109.47118 * 301.14922 * 1 2 3 24 24 H 1.09000 * 109.47531 * 61.14571 * 1 2 3 25 25 H 1.08993 * 109.47192 * 181.14593 * 1 2 3 26 26 H 1.09005 * 109.46987 * 240.00209 * 2 1 3 27 27 H 1.09004 * 109.47113 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47211 * 300.00350 * 3 2 1 29 29 H 1.09002 * 109.47233 * 59.99749 * 3 2 1 30 30 H 1.08998 * 109.47162 * 294.52386 * 4 2 1 31 31 H 0.96993 * 119.99570 * 5.33671 * 7 5 4 32 32 H 1.09005 * 109.47359 * 64.68688 * 8 7 5 33 33 H 1.09002 * 109.47639 * 304.69329 * 8 7 5 34 34 H 0.97000 * 120.00445 * 184.96344 * 13 12 10 35 35 H 1.09000 * 117.49680 * 215.00554 * 18 9 8 36 36 H 1.08997 * 117.49964 * 0.02562 * 18 9 8 37 37 H 1.09005 * 117.49819 * 359.97207 * 19 9 8 38 38 H 1.09000 * 117.50480 * 144.96920 * 19 9 8 39 39 H 1.09000 * 109.46971 * 306.99978 * 20 4 2 40 40 H 1.09002 * 109.47086 * 184.18625 * 21 20 4 41 41 H 1.08998 * 109.46694 * 304.18619 * 21 20 4 42 42 H 1.08999 * 109.47173 * 64.18602 * 21 20 4 43 43 H 1.08999 * 109.46790 * 65.10994 * 22 20 4 44 44 H 1.08992 * 109.47049 * 185.11285 * 22 20 4 45 45 H 1.09002 * 109.46731 * 305.11691 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5408 -0.8398 1.1832 6 8 4.1137 -0.7067 0.1225 7 7 4.2467 -1.0937 2.3031 8 6 5.7111 -1.0932 2.2618 9 6 6.2599 -1.5211 3.6243 10 6 5.7478 -2.8388 4.1466 11 1 5.5811 -2.9719 5.2053 12 6 5.4867 -3.8723 3.2721 13 7 5.6914 -3.7107 1.9831 14 14 4.8423 -5.5022 3.9184 15 1 3.3576 -5.4744 3.9386 16 1 5.3048 -6.6026 3.0350 17 1 5.3519 -5.7251 5.2952 18 6 7.7058 -1.1446 3.9535 19 6 6.5491 -0.4203 4.6468 20 6 1.4207 -2.1185 1.3199 21 6 1.9538 -2.9716 0.1672 22 6 1.7903 -2.7733 2.6525 23 1 -0.3633 0.5316 0.8795 24 1 -0.3634 0.4959 -0.9001 25 1 -0.3633 -1.0274 0.0206 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.7590 -0.1538 2.1365 31 1 3.7850 -1.2767 3.1362 32 1 6.0676 -0.0907 2.0250 33 1 6.0533 -1.7904 1.4970 34 1 5.4405 -4.4110 1.3606 35 1 8.2867 -1.8500 4.5477 36 1 8.2660 -0.5917 3.1995 37 1 6.3489 0.6089 4.3486 38 1 6.3687 -0.6489 5.6972 39 1 0.3363 -2.0396 1.2423 40 1 1.4573 -3.9420 0.1735 41 1 1.7558 -2.4682 -0.7791 42 1 3.0281 -3.1125 0.2860 43 1 1.3338 -2.2157 3.4702 44 1 1.4266 -3.8007 2.6656 45 1 2.8739 -2.7699 2.7707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404192110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:36 Heat of formation + Delta-G solvation = -38.077645 kcal Electronic energy + Delta-G solvation = -22533.676569 eV Core-core repulsion = 19551.154814 eV Total energy + Delta-G solvation = -2982.521756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.70824 -37.02676 -35.89100 -33.69835 -32.57304 -32.14108 -27.69136 -26.89550 -26.63630 -25.75525 -24.87840 -21.26715 -20.77423 -20.26753 -19.26364 -18.38287 -16.69299 -15.96947 -15.38901 -14.81191 -14.60047 -14.44141 -13.93446 -13.58150 -13.42556 -12.84934 -12.63381 -12.51599 -12.46329 -12.02096 -12.00696 -11.65514 -11.50106 -11.36080 -11.21401 -11.02862 -10.92598 -10.72192 -10.66222 -10.52340 -10.31141 -10.23595 -10.03366 -9.95302 -9.64728 -9.05733 -8.82538 -8.68465 -8.23557 -7.72912 -5.98451 -4.17924 3.20278 3.30559 3.31979 3.64092 4.22607 4.30494 4.90330 4.95130 5.12901 5.24283 5.37899 5.48396 5.52866 5.59289 5.77510 5.82206 5.89530 5.93850 5.95733 6.03767 6.04929 6.13233 6.22355 6.29417 6.34071 6.34338 6.40012 6.51558 6.56196 6.60991 6.62449 6.66077 6.74480 6.82026 6.90991 6.94108 7.14081 7.27099 7.61144 7.74662 8.00656 8.32936 8.67802 8.85423 9.33520 9.45358 10.91110 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.007958 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.342927 B = 3517.599209 C = 4465.064528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.147 4.147 4 C -0.100 4.100 5 C 0.516 3.484 6 O -0.559 6.559 7 N -0.688 5.688 8 C 0.161 3.839 9 C 0.038 3.962 10 C -0.497 4.497 11 H 0.059 0.941 12 C 0.079 3.921 13 N -0.861 5.861 14 Si 0.883 3.117 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.199 4.199 19 C -0.214 4.214 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.171 4.171 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.396 0.604 32 H 0.015 0.985 33 H 0.118 0.882 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 4.872 -1.125 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.122 4.122 5 C 0.302 3.698 6 O -0.439 6.439 7 N -0.336 5.336 8 C 0.038 3.962 9 C 0.037 3.963 10 C -0.534 4.534 11 H 0.077 0.923 12 C -0.126 4.126 13 N -0.497 5.497 14 Si 0.711 3.289 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.237 4.237 19 C -0.251 4.251 20 C -0.101 4.101 21 C -0.208 4.208 22 C -0.228 4.228 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.232 0.768 32 H 0.033 0.967 33 H 0.135 0.865 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.002 4.847 -2.040 10.426 hybrid contribution -0.477 -0.996 0.920 1.437 sum -9.479 3.851 -1.119 10.293 Atomic orbital electron populations 1.21944 0.95649 1.01725 1.01265 1.20908 0.94550 0.96101 0.98120 1.21849 1.02365 0.95576 1.00622 1.21482 0.93644 0.97492 0.99569 1.20140 0.88582 0.76912 0.84211 1.90598 1.71950 1.52184 1.29133 1.45905 1.08124 1.68723 1.10850 1.21053 0.78341 0.97394 0.99422 1.19243 0.92901 0.92938 0.91177 1.20476 1.44927 0.94569 0.93419 0.92273 1.24925 0.94742 0.98075 0.94860 1.69845 1.45058 1.33551 1.01254 0.86727 0.79342 0.83907 0.78937 1.20188 1.21187 1.19966 1.22922 0.93499 1.03807 1.03492 1.22952 1.07003 0.96694 0.98438 1.21081 0.99576 0.93127 0.96299 1.21909 1.02845 0.98488 0.97544 1.22218 1.04839 1.00016 0.95750 0.92970 0.92985 0.92243 0.89892 0.91671 0.93196 0.93474 0.90044 0.76825 0.96729 0.86485 0.92708 0.90297 0.91559 0.91443 0.90696 0.90725 0.93496 0.92738 0.91071 0.93065 0.92975 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.74 37.16 0.32 -1.37 16 2 C -0.08 -1.12 1.84 -90.62 -0.17 -1.29 16 3 C -0.15 -2.07 8.97 37.16 0.33 -1.73 16 4 C -0.10 -1.58 1.57 -91.77 -0.14 -1.73 16 5 C 0.52 10.34 4.61 -10.98 -0.05 10.29 16 6 O -0.56 -12.98 14.78 5.55 0.08 -12.90 16 7 N -0.69 -14.39 4.26 -60.30 -0.26 -14.64 16 8 C 0.16 3.76 4.64 -4.05 -0.02 3.75 16 9 C 0.04 0.89 2.01 -155.66 -0.31 0.57 16 10 C -0.50 -12.38 8.45 -34.44 -0.29 -12.67 16 11 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 12 C 0.08 1.96 5.19 -17.82 -0.09 1.87 16 13 N -0.86 -22.38 10.31 55.43 0.57 -21.81 16 14 Si 0.88 19.81 29.54 -169.99 -5.02 14.79 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C -0.20 -4.34 9.96 -26.69 -0.27 -4.61 16 19 C -0.21 -4.42 9.93 -26.69 -0.26 -4.69 16 20 C -0.08 -1.25 2.39 -90.61 -0.22 -1.46 16 21 C -0.15 -2.51 8.59 37.16 0.32 -2.19 16 22 C -0.17 -2.80 8.68 37.16 0.32 -2.48 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.65 6.12 -51.93 -0.32 0.33 16 26 H 0.08 1.35 6.37 -51.93 -0.33 1.02 16 27 H 0.06 1.09 6.67 -51.93 -0.35 0.74 16 28 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.40 7.98 6.27 -40.82 -0.26 7.72 16 32 H 0.01 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.12 3.14 5.86 -51.93 -0.30 2.84 16 34 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.07 0.97 5.92 -51.93 -0.31 0.66 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.86 6.58 -51.93 -0.34 0.52 16 42 H 0.07 1.46 7.16 -51.93 -0.37 1.08 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.73 5.23 -51.93 -0.27 1.46 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -26.48 343.87 -7.85 -34.33 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -7.88 Total: 12.78 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -0.52 Total: -17.73 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.32 Total: -36.45 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.48 -7.85 -34.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404192110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.749 kcal (2) G-P(sol) polarization free energy of solvation -26.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds