Wall clock time and date at job start Mon Mar 30 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47080 * 2 1 4 4 C 1.52998 * 109.47334 * 119.99785 * 2 1 3 5 5 C 1.50692 * 109.47174 * 174.51967 * 4 2 1 6 6 O 1.21288 * 120.00368 * 341.67438 * 5 4 2 7 7 N 1.34786 * 119.99901 * 161.67131 * 5 4 2 8 8 C 1.46497 * 119.99923 * 185.33565 * 7 5 4 9 9 C 1.52994 * 109.47274 * 184.68880 * 8 7 5 10 10 C 1.50708 * 115.54886 * 54.54142 * 9 8 7 11 11 H 1.07997 * 119.99567 * 215.45382 * 10 9 8 12 12 C 1.37874 * 119.99707 * 35.16821 * 10 9 8 13 13 N 1.31513 * 120.00341 * 0.37548 * 12 10 9 14 14 Si 1.86805 * 119.99785 * 180.36738 * 12 10 9 15 15 H 1.48507 * 109.46622 * 90.00532 * 14 12 10 16 16 H 1.48497 * 109.47038 * 210.00397 * 14 12 10 17 17 H 1.48499 * 109.47332 * 330.00761 * 14 12 10 18 18 C 1.52999 * 117.50285 * 200.21010 * 9 8 7 19 19 C 1.52998 * 117.50298 * 268.87310 * 9 8 7 20 20 C 1.53005 * 109.46659 * 54.52522 * 4 2 1 21 21 C 1.52997 * 109.47457 * 67.00352 * 20 4 2 22 22 C 1.53008 * 109.46945 * 187.00485 * 20 4 2 23 23 H 1.09004 * 109.47118 * 301.14922 * 1 2 3 24 24 H 1.09000 * 109.47531 * 61.14571 * 1 2 3 25 25 H 1.08993 * 109.47192 * 181.14593 * 1 2 3 26 26 H 1.09005 * 109.46987 * 240.00209 * 2 1 3 27 27 H 1.09004 * 109.47113 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47211 * 300.00350 * 3 2 1 29 29 H 1.09002 * 109.47233 * 59.99749 * 3 2 1 30 30 H 1.08998 * 109.47162 * 294.52386 * 4 2 1 31 31 H 0.96993 * 119.99570 * 5.33671 * 7 5 4 32 32 H 1.09005 * 109.47359 * 64.68688 * 8 7 5 33 33 H 1.09002 * 109.47639 * 304.69329 * 8 7 5 34 34 H 0.97000 * 120.00445 * 184.96344 * 13 12 10 35 35 H 1.09000 * 117.49680 * 215.00554 * 18 9 8 36 36 H 1.08997 * 117.49964 * 0.02562 * 18 9 8 37 37 H 1.09005 * 117.49819 * 359.97207 * 19 9 8 38 38 H 1.09000 * 117.50480 * 144.96920 * 19 9 8 39 39 H 1.09000 * 109.46971 * 306.99978 * 20 4 2 40 40 H 1.09002 * 109.47086 * 184.18625 * 21 20 4 41 41 H 1.08998 * 109.46694 * 304.18619 * 21 20 4 42 42 H 1.08999 * 109.47173 * 64.18602 * 21 20 4 43 43 H 1.08999 * 109.46790 * 65.10994 * 22 20 4 44 44 H 1.08992 * 109.47049 * 185.11285 * 22 20 4 45 45 H 1.09002 * 109.46731 * 305.11691 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5408 -0.8398 1.1832 6 8 4.1137 -0.7067 0.1225 7 7 4.2467 -1.0937 2.3031 8 6 5.7111 -1.0932 2.2618 9 6 6.2599 -1.5211 3.6243 10 6 5.7478 -2.8388 4.1466 11 1 5.5811 -2.9719 5.2053 12 6 5.4867 -3.8723 3.2721 13 7 5.6914 -3.7107 1.9831 14 14 4.8423 -5.5022 3.9184 15 1 3.3576 -5.4744 3.9386 16 1 5.3048 -6.6026 3.0350 17 1 5.3519 -5.7251 5.2952 18 6 7.7058 -1.1446 3.9535 19 6 6.5491 -0.4203 4.6468 20 6 1.4207 -2.1185 1.3199 21 6 1.9538 -2.9716 0.1672 22 6 1.7903 -2.7733 2.6525 23 1 -0.3633 0.5316 0.8795 24 1 -0.3634 0.4959 -0.9001 25 1 -0.3633 -1.0274 0.0206 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.7590 -0.1538 2.1365 31 1 3.7850 -1.2767 3.1362 32 1 6.0676 -0.0907 2.0250 33 1 6.0533 -1.7904 1.4970 34 1 5.4405 -4.4110 1.3606 35 1 8.2867 -1.8500 4.5477 36 1 8.2660 -0.5917 3.1995 37 1 6.3489 0.6089 4.3486 38 1 6.3687 -0.6489 5.6972 39 1 0.3363 -2.0396 1.2423 40 1 1.4573 -3.9420 0.1735 41 1 1.7558 -2.4682 -0.7791 42 1 3.0281 -3.1125 0.2860 43 1 1.3338 -2.2157 3.4702 44 1 1.4266 -3.8007 2.6656 45 1 2.8739 -2.7699 2.7707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404192110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:35 Heat of formation + Delta-G solvation = -51.244872 kcal Electronic energy + Delta-G solvation = -22534.247543 eV Core-core repulsion = 19551.154814 eV Total energy + Delta-G solvation = -2983.092730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.19224 -38.71072 -37.39873 -35.09937 -34.15960 -33.96819 -29.07973 -28.09751 -27.81624 -27.60724 -26.56416 -22.98586 -22.01932 -21.68962 -21.08579 -19.85163 -18.32413 -17.57866 -16.87540 -16.67721 -16.23623 -15.63286 -15.49833 -15.18357 -14.80093 -14.45253 -14.22589 -13.85014 -13.62100 -13.50590 -13.38060 -13.10804 -12.96905 -12.87034 -12.80854 -12.54354 -12.35866 -12.30146 -12.10337 -12.02372 -11.81003 -11.62661 -11.45717 -11.24710 -11.14854 -10.92809 -10.64033 -10.34541 -10.04985 -9.48994 -7.90452 -6.15560 1.40393 1.45735 1.51537 2.07011 2.42650 2.67586 3.12358 3.66441 3.71379 3.91076 3.97960 4.20515 4.28421 4.33903 4.41097 4.51814 4.56582 4.69109 4.74225 4.76438 4.80213 4.83732 4.85259 4.90198 4.96111 5.03479 5.08381 5.10514 5.13970 5.18747 5.19695 5.33118 5.36930 5.40429 5.50555 5.53953 5.57640 5.62769 5.68193 6.02512 6.04117 6.41411 6.83020 7.12092 7.49633 7.73440 8.95728 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.007958 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.342927 B = 3517.599209 C = 4465.064528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.093 4.093 5 C 0.513 3.487 6 O -0.598 6.598 7 N -0.685 5.685 8 C 0.174 3.826 9 C 0.011 3.989 10 C -0.503 4.503 11 H 0.055 0.945 12 C 0.047 3.953 13 N -0.881 5.881 14 Si 0.931 3.069 15 H -0.264 1.264 16 H -0.296 1.296 17 H -0.274 1.274 18 C -0.203 4.203 19 C -0.186 4.186 20 C -0.075 4.075 21 C -0.146 4.146 22 C -0.171 4.171 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.401 0.599 32 H 0.009 0.991 33 H 0.079 0.921 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.089 5.616 0.044 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.202 4.202 4 C -0.115 4.115 5 C 0.300 3.700 6 O -0.480 6.480 7 N -0.333 5.333 8 C 0.049 3.951 9 C 0.011 3.989 10 C -0.540 4.540 11 H 0.074 0.926 12 C -0.155 4.155 13 N -0.518 5.518 14 Si 0.758 3.242 15 H -0.189 1.189 16 H -0.223 1.223 17 H -0.199 1.199 18 C -0.241 4.241 19 C -0.224 4.224 20 C -0.094 4.094 21 C -0.203 4.203 22 C -0.229 4.229 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.237 0.763 32 H 0.027 0.973 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.616 5.597 -0.843 12.921 hybrid contribution 0.400 -1.213 0.537 1.385 sum -11.216 4.384 -0.307 12.046 Atomic orbital electron populations 1.21892 0.92529 1.02672 1.02768 1.20905 0.96975 0.95566 0.96126 1.21820 1.00051 0.95966 1.02319 1.21540 0.89918 0.98616 1.01402 1.20964 0.90506 0.75376 0.83126 1.90574 1.73244 1.53697 1.30489 1.45859 1.07142 1.68846 1.11495 1.20665 0.80068 0.95793 0.98541 1.19286 0.94051 0.93672 0.91938 1.20615 1.44881 0.95380 0.93148 0.92648 1.25408 0.95017 1.00245 0.94831 1.70031 1.45996 1.33734 1.02007 0.85977 0.79545 0.80716 0.78009 1.18852 1.22283 1.19865 1.22941 0.93187 1.04127 1.03878 1.22940 1.04650 0.96623 0.98152 1.21115 1.01427 0.91948 0.94879 1.21853 0.99924 0.99864 0.98708 1.22204 1.02642 1.00754 0.97284 0.91288 0.91741 0.91533 0.92460 0.95219 0.91629 0.91662 0.87804 0.76257 0.97279 0.90325 0.93587 0.90640 0.90924 0.89815 0.89748 0.86997 0.92074 0.92312 0.95720 0.90553 0.92904 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.74 71.98 0.63 -2.03 16 2 C -0.08 -2.06 1.84 -10.80 -0.02 -2.08 16 3 C -0.14 -3.84 8.97 71.98 0.65 -3.20 16 4 C -0.09 -2.79 1.57 -11.54 -0.02 -2.81 16 5 C 0.51 20.83 4.61 87.65 0.40 21.24 16 6 O -0.60 -29.00 14.78 -3.06 -0.05 -29.04 16 7 N -0.69 -29.07 4.26 -463.06 -1.97 -31.04 16 8 C 0.17 8.36 4.64 86.38 0.40 8.76 16 9 C 0.01 0.52 2.01 -52.93 -0.11 0.42 16 10 C -0.50 -25.12 8.45 25.60 0.22 -24.90 16 11 H 0.06 2.76 7.81 -2.91 -0.02 2.74 16 12 C 0.05 2.39 5.19 84.65 0.44 2.83 16 13 N -0.88 -47.45 10.31 21.45 0.22 -47.23 16 14 Si 0.93 40.81 29.54 68.60 2.03 42.84 16 15 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 16 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 C -0.20 -8.80 9.96 30.62 0.30 -8.49 16 19 C -0.19 -7.44 9.93 30.62 0.30 -7.14 16 20 C -0.08 -2.11 2.39 -10.79 -0.03 -2.14 16 21 C -0.15 -4.81 8.59 71.98 0.62 -4.19 16 22 C -0.17 -5.26 8.68 71.98 0.62 -4.64 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.16 6.12 -2.39 -0.01 1.15 16 26 H 0.06 1.84 6.37 -2.38 -0.02 1.82 16 27 H 0.03 0.98 6.67 -2.38 -0.02 0.97 16 28 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.40 16.07 6.27 -92.71 -0.58 15.49 16 32 H 0.01 0.44 8.09 -2.38 -0.02 0.42 16 33 H 0.08 4.44 5.86 -2.39 -0.01 4.43 16 34 H 0.25 13.67 8.32 -92.71 -0.77 12.90 16 35 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 38 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.11 2.40 5.92 -2.39 -0.01 2.38 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.06 1.84 6.58 -2.39 -0.02 1.83 16 42 H 0.02 1.02 7.16 -2.39 -0.02 1.00 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 2.05 5.23 -2.39 -0.01 2.04 16 Total: -1.00 -59.33 343.87 5.02 -54.31 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.37 Total: 38.54 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 4.42 Total: -28.37 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.75 Total: -78.27 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.05 Total: -29.04 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -59.33 5.02 -54.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404192110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.064 kcal (2) G-P(sol) polarization free energy of solvation -59.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds