Wall clock time and date at job start Mon Mar 30 2020 07:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50693 * 119.99840 * 2 1 4 4 H 1.08995 * 109.89871 * 359.06456 * 3 2 1 5 5 O 1.43242 * 109.83151 * 238.13098 * 3 2 1 6 6 C 1.43646 * 109.97182 * 242.20243 * 5 3 2 7 7 C 1.54946 * 105.13604 * 335.56504 * 6 5 3 8 8 C 1.54389 * 109.83214 * 120.00148 * 3 2 1 9 9 H 1.08999 * 111.02091 * 22.59933 * 8 3 2 10 10 C 1.52998 * 110.84377 * 259.06142 * 8 3 2 11 11 N 1.46899 * 109.47233 * 180.71366 * 10 8 3 12 12 C 1.46893 * 111.00557 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47638 * 179.97438 * 12 11 10 14 14 C 1.53010 * 109.46859 * 60.00008 * 13 12 11 15 15 C 1.53003 * 109.47127 * 300.00447 * 13 12 11 16 16 C 1.53002 * 109.47535 * 179.97438 * 13 12 11 17 17 C 1.50696 * 109.46997 * 179.97438 * 16 13 12 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 13 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.08004 * 120.00398 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00125 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99654 * 179.97438 * 2 1 3 28 28 H 1.09002 * 110.30533 * 216.65537 * 6 5 3 29 29 H 1.08998 * 110.31428 * 94.48343 * 6 5 3 30 30 H 1.08993 * 111.13119 * 278.52804 * 7 6 5 31 31 H 1.09005 * 111.12374 * 154.36506 * 7 6 5 32 32 H 1.08996 * 109.47736 * 60.70839 * 10 8 3 33 33 H 1.09003 * 109.46988 * 300.71062 * 10 8 3 34 34 H 1.00907 * 111.00122 * 56.04137 * 11 10 8 35 35 H 1.09005 * 109.46920 * 59.99721 * 12 11 10 36 36 H 1.09004 * 109.47361 * 300.00031 * 12 11 10 37 37 H 1.08996 * 109.46838 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.46879 * 300.00489 * 14 13 12 39 39 H 1.09004 * 109.46811 * 60.00411 * 14 13 12 40 40 H 1.08997 * 109.46624 * 299.99600 * 15 13 12 41 41 H 1.08998 * 109.46996 * 59.99901 * 15 13 12 42 42 H 1.09005 * 109.46920 * 179.97438 * 15 13 12 43 43 H 1.09005 * 109.46767 * 60.00250 * 16 13 12 44 44 H 1.09002 * 109.47113 * 300.00590 * 16 13 12 45 45 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3614 2.1387 -0.0167 5 8 2.9225 1.3702 -1.1443 6 6 4.2936 1.4547 -0.7244 7 6 4.2434 2.0592 0.7015 8 6 2.9542 1.3956 1.2577 9 1 3.1692 0.4043 1.6567 10 6 2.3031 2.2794 2.3235 11 7 3.1821 2.3584 3.4979 12 6 2.5883 3.2014 4.5441 13 6 3.5302 3.2589 5.7485 14 6 4.8735 3.8513 5.3175 15 6 3.7474 1.8460 6.2940 16 6 2.9120 4.1375 6.8380 17 6 3.8395 4.1935 8.0244 18 1 4.7764 3.6566 8.0033 19 6 3.4920 4.9303 9.1368 20 7 4.3017 4.9796 10.1721 21 14 1.8713 5.8583 9.1735 22 1 2.0728 7.2280 8.6362 23 1 0.8718 5.1421 8.3409 24 1 1.3808 5.9427 10.5727 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 4.8543 2.1082 -1.3927 29 1 4.7434 0.4623 -0.6989 30 1 4.1427 3.1438 0.6651 31 1 5.1179 1.7670 1.2830 32 1 1.3445 1.8506 2.6153 33 1 2.1458 3.2796 1.9195 34 1 4.0989 2.6928 3.2415 35 1 1.6315 2.7792 4.8514 36 1 2.4332 4.2079 4.1554 37 1 5.5447 3.8918 6.1754 38 1 5.3141 3.2258 4.5411 39 1 4.7188 4.8578 4.9289 40 1 2.7904 1.4241 6.6010 41 1 4.1880 1.2206 5.5176 42 1 4.4187 1.8870 7.1517 43 1 1.9549 3.7158 7.1451 44 1 2.7577 5.1439 6.4490 45 1 4.0573 5.4982 10.9545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424176891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:06 Heat of formation + Delta-G solvation = -45.488966 kcal Electronic energy + Delta-G solvation = -20821.514137 eV Core-core repulsion = 17838.671002 eV Total energy + Delta-G solvation = -2982.843135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03753 -37.76096 -35.04470 -34.04854 -32.48675 -31.48338 -29.07130 -27.66212 -26.39860 -25.93601 -24.01026 -22.87826 -21.81765 -20.74535 -20.10640 -17.91384 -16.92211 -16.75382 -16.45620 -15.51075 -15.22411 -14.72600 -14.18149 -14.07318 -13.81399 -13.70466 -13.28877 -13.07949 -12.84259 -12.53118 -12.24770 -12.04765 -11.81000 -11.68801 -11.31294 -11.14387 -11.09216 -10.98857 -10.89941 -10.83192 -10.50291 -10.34467 -9.90263 -9.82417 -9.68270 -9.60211 -9.29419 -8.91168 -8.50228 -8.21182 -6.00578 -3.96751 1.93852 3.31413 3.39403 3.42876 3.76746 4.04607 4.29136 4.47779 4.57092 4.67384 4.86972 4.94197 5.03759 5.14863 5.19612 5.32457 5.42976 5.50836 5.53321 5.56299 5.62817 5.67824 5.69985 5.79944 5.86978 6.04431 6.13097 6.23435 6.32009 6.39619 6.46627 6.57400 6.66890 6.75935 6.78780 7.06012 7.12042 7.16978 7.26505 7.31893 7.45231 7.58898 7.84850 8.59204 9.05281 9.62575 11.12542 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.003552 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.341265 B = 7880.906639 C = 8281.813594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.112 3.888 4 H 0.083 0.917 5 O -0.376 6.376 6 C 0.050 3.950 7 C -0.155 4.155 8 C -0.109 4.109 9 H 0.096 0.904 10 C 0.069 3.931 11 N -0.684 5.684 12 C 0.067 3.933 13 C -0.049 4.049 14 C -0.130 4.130 15 C -0.117 4.117 16 C -0.004 4.004 17 C -0.507 4.507 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.876 3.124 22 H -0.279 1.279 23 H -0.267 1.267 24 H -0.289 1.289 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.339 0.661 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.015 0.985 44 H 0.008 0.992 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 -7.543 -20.906 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.180 4.180 3 C 0.054 3.946 4 H 0.101 0.899 5 O -0.295 6.295 6 C -0.026 4.026 7 C -0.193 4.193 8 C -0.128 4.128 9 H 0.115 0.885 10 C -0.061 4.061 11 N -0.316 5.316 12 C -0.061 4.061 13 C -0.049 4.049 14 C -0.188 4.188 15 C -0.175 4.175 16 C -0.042 4.042 17 C -0.545 4.545 18 H 0.096 0.904 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.703 3.297 22 H -0.205 1.205 23 H -0.191 1.191 24 H -0.215 1.215 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.026 0.974 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.625 -8.053 -20.662 22.471 hybrid contribution -0.722 1.469 0.055 1.638 sum -4.346 -6.584 -20.607 22.066 Atomic orbital electron populations 1.23859 0.95778 1.02110 0.99666 1.23172 0.96129 0.98314 1.00352 1.21853 0.92203 0.95336 0.85250 0.89930 1.88466 1.16116 1.95007 1.29945 1.23380 0.83803 1.00228 0.95223 1.23368 0.98744 1.01041 0.96144 1.22752 0.94312 1.01271 0.94500 0.88531 1.21852 0.97008 0.97016 0.90188 1.60529 1.05607 1.56177 1.09296 1.22141 0.98470 0.93518 0.92014 1.20425 0.94264 0.96840 0.93419 1.21785 0.97770 0.98524 1.00704 1.21609 1.00971 0.94822 1.00062 1.19629 0.96528 0.93910 0.94150 1.21137 1.05559 1.29934 0.97881 0.90421 1.25021 0.96565 0.96382 0.95632 1.69911 1.36847 1.42023 1.05742 0.86848 0.85163 0.80574 0.77076 1.20518 1.19141 1.21532 0.88431 0.88095 0.87084 0.89745 0.92148 0.90451 0.89308 0.90838 0.95394 0.84141 0.91553 0.95910 0.91119 0.94655 0.94168 0.94215 0.93688 0.92127 0.96709 0.97419 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 14.32 29.02 0.42 -1.08 16 2 C -0.16 -1.52 9.03 -36.03 -0.33 -1.85 16 3 C 0.11 1.12 3.50 -27.16 -0.10 1.02 16 4 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 5 O -0.38 -4.22 11.00 -35.23 -0.39 -4.61 16 6 C 0.05 0.44 7.78 38.18 0.30 0.73 16 7 C -0.16 -1.36 5.81 -24.48 -0.14 -1.50 16 8 C -0.11 -1.07 2.76 -88.67 -0.24 -1.31 16 9 H 0.10 1.00 7.85 -51.93 -0.41 0.59 16 10 C 0.07 0.77 5.04 -3.83 -0.02 0.75 16 11 N -0.68 -9.08 5.71 -113.79 -0.65 -9.73 16 12 C 0.07 1.08 4.65 -3.83 -0.02 1.06 16 13 C -0.05 -0.93 0.60 -154.50 -0.09 -1.02 16 14 C -0.13 -2.35 7.89 37.16 0.29 -2.05 16 15 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 16 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 17 C -0.51 -13.92 8.21 -34.44 -0.28 -14.21 16 18 H 0.08 2.27 5.92 -52.49 -0.31 1.96 16 19 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 20 N -0.91 -27.70 13.96 55.43 0.77 -26.92 16 21 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H 0.10 0.77 7.85 -52.48 -0.41 0.35 16 26 H 0.10 0.72 8.06 -52.48 -0.42 0.30 16 27 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.69 8.02 -51.93 -0.42 0.27 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.31 8.11 -51.93 -0.42 -0.11 16 34 H 0.34 4.30 6.00 -39.29 -0.24 4.06 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 38 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 42 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 43 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 44 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 348.08 15.07 5.25 5.25 Total: -1.00 -29.83 348.08 -7.96 -37.80 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.18 Total: 0.99 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -0.10 Total: -19.81 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.12 Total: -36.65 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.39 Total: -4.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.83 -7.96 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424176891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.694 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds