Wall clock time and date at job start Mon Mar 30 2020 07:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46974 * 2 1 4 4 C 1.53002 * 109.46964 * 120.00329 * 2 1 3 5 5 C 1.52996 * 109.46891 * 175.00107 * 4 2 1 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47598 * 90.00303 * 10 9 7 12 12 H 1.08005 * 119.99628 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00538 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99774 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00058 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47013 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46808 * 120.00120 * 15 13 11 18 18 H 1.48501 * 109.46891 * 240.00253 * 15 13 11 19 19 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.46986 * 90.00387 * 19 9 7 21 21 C 1.52997 * 117.49514 * 243.61460 * 20 19 9 22 22 C 1.52997 * 60.00268 * 252.51458 * 21 20 19 23 23 H 1.08998 * 109.47250 * 299.99891 * 1 2 3 24 24 H 1.09004 * 109.47455 * 59.99817 * 1 2 3 25 25 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46592 * 240.00394 * 2 1 3 27 27 H 1.09000 * 109.46868 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47394 * 299.99876 * 3 2 1 29 29 H 1.08998 * 109.47043 * 59.99982 * 3 2 1 30 30 H 1.08992 * 109.47056 * 54.99761 * 4 2 1 31 31 H 1.08996 * 109.46698 * 294.99877 * 4 2 1 32 32 H 1.09001 * 109.47372 * 59.99964 * 5 4 2 33 33 H 1.09004 * 109.47108 * 299.99708 * 5 4 2 34 34 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 35 35 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 36 36 H 1.09008 * 109.47096 * 209.99661 * 10 9 7 37 37 H 1.09003 * 109.47776 * 329.99537 * 10 9 7 38 38 H 0.97002 * 119.99965 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.46971 * 209.99938 * 19 9 7 40 40 H 1.08993 * 109.47768 * 330.00002 * 19 9 7 41 41 H 1.09000 * 115.55217 * 29.32861 * 20 19 9 42 42 H 1.09003 * 117.50408 * 0.02562 * 21 20 19 43 43 H 1.09009 * 117.49806 * 145.01909 * 21 20 19 44 44 H 1.09001 * 117.49351 * 252.51715 * 22 21 20 45 45 H 1.08988 * 117.50123 * 107.49613 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 6 4.0748 -1.5518 2.4374 7 6 5.5767 -1.6605 2.3768 8 8 6.1797 -1.2058 1.4279 9 7 6.2496 -2.2630 3.3771 10 6 7.7096 -2.3682 3.3184 11 6 8.3272 -1.1580 3.9704 12 1 7.6952 -0.3873 4.3866 13 6 9.6988 -1.0345 4.0357 14 7 10.4684 -1.9726 3.5285 15 14 10.4642 0.4660 4.8433 16 1 9.3898 1.3678 5.3308 17 1 11.3065 0.0363 5.9883 18 1 11.3045 1.1864 3.8533 19 6 5.5211 -2.8128 4.5230 20 6 5.1490 -4.2695 4.2395 21 6 3.6609 -4.6150 4.1556 22 6 4.4824 -5.0605 5.3670 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6053 -1.7198 1.2951 31 1 1.7516 -0.1584 2.1369 32 1 3.9994 0.1675 1.1421 33 1 3.8531 -1.3940 0.3002 34 1 3.6402 -2.5504 2.4837 35 1 3.7864 -0.9887 3.3250 36 1 8.0306 -3.2675 3.8441 37 1 8.0285 -2.4225 2.2774 38 1 11.4334 -1.8856 3.5741 39 1 6.1513 -2.7650 5.4111 40 1 4.6140 -2.2319 4.6896 41 1 5.8292 -4.8088 3.5803 42 1 2.9469 -3.8044 4.3019 43 1 3.3617 -5.3816 3.4408 44 1 4.7238 -6.1203 5.4490 45 1 4.3091 -4.5433 6.3105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448909182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:32 Heat of formation + Delta-G solvation = -46.815237 kcal Electronic energy + Delta-G solvation = -20837.559502 eV Core-core repulsion = 17854.658856 eV Total energy + Delta-G solvation = -2982.900646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.23896 -37.28584 -36.81477 -34.37794 -32.72672 -32.27280 -28.26491 -27.25683 -26.95904 -25.73140 -23.12673 -22.28372 -21.38730 -20.60790 -19.97441 -18.22187 -16.48023 -16.43959 -15.65077 -15.33563 -14.99222 -14.64472 -14.34612 -14.16979 -13.89466 -13.51797 -13.06842 -12.70672 -12.38047 -12.30134 -12.16191 -11.77881 -11.71176 -11.53549 -11.41295 -11.25886 -11.16545 -10.93605 -10.80252 -10.66377 -10.58896 -10.46472 -10.33717 -10.27264 -10.05621 -9.77922 -9.56285 -8.76936 -8.40987 -7.61071 -6.01538 -4.05898 3.31206 3.38515 3.42248 3.53532 3.83964 4.07182 4.47116 4.72877 4.84763 4.88390 4.93375 5.05551 5.08759 5.29253 5.32320 5.35137 5.43544 5.51894 5.53446 5.64135 5.66937 5.69898 5.75961 5.80846 5.88195 5.89834 5.92168 5.97808 6.03003 6.11764 6.17054 6.19322 6.22306 6.26529 6.48087 6.50566 6.61601 7.12821 7.49383 7.61131 7.95661 8.27622 8.50303 8.94703 9.18788 9.59327 11.06582 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.005058 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.868144 B = 5534.708771 C = 7040.880117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.506 3.494 8 O -0.544 6.544 9 N -0.597 5.597 10 C 0.245 3.755 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.143 3.857 20 C -0.164 4.164 21 C -0.185 4.185 22 C -0.177 4.177 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.042 0.958 38 H 0.262 0.738 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.904 -1.704 -0.407 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.151 4.151 5 C -0.142 4.142 6 C -0.181 4.181 7 C 0.293 3.707 8 O -0.421 6.421 9 N -0.328 5.328 10 C 0.126 3.874 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C 0.019 3.981 20 C -0.184 4.184 21 C -0.222 4.222 22 C -0.215 4.215 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.361 -1.503 -0.934 18.446 hybrid contribution 0.548 0.652 0.590 1.036 sum -17.813 -0.852 -0.344 17.837 Atomic orbital electron populations 1.21846 0.95649 1.01424 1.01457 1.21115 0.95175 0.96610 0.98727 1.21905 1.01889 0.95787 1.01226 1.21669 0.95833 1.00093 0.97528 1.21384 0.93966 1.01572 0.97323 1.21751 0.94046 1.02290 1.00039 1.20427 0.89227 0.78381 0.82705 1.90654 1.70372 1.47628 1.33479 1.48194 1.09504 1.55815 1.19314 1.19259 0.72539 0.96886 0.98712 1.21484 0.91496 1.05823 1.37476 0.92479 1.24934 0.97071 0.96514 0.95620 1.69945 1.04467 1.33461 1.45556 0.86460 0.79196 0.82886 0.78987 1.19825 1.20992 1.20894 1.20988 0.96583 0.90085 0.90466 1.22945 0.95209 0.97856 1.02341 1.23041 0.94321 1.03574 1.01265 1.22893 1.04708 1.00320 0.93547 0.92858 0.93003 0.92889 0.91249 0.91892 0.93157 0.92893 0.92193 0.92160 0.91086 0.91502 0.89552 0.89992 0.95103 0.93979 0.92832 0.89662 0.91454 0.87469 0.88886 0.89238 0.89052 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 37.16 0.34 -0.90 16 2 C -0.10 -0.98 2.92 -90.62 -0.26 -1.25 16 3 C -0.15 -1.56 8.95 37.16 0.33 -1.23 16 4 C -0.11 -1.22 4.68 -26.73 -0.13 -1.34 16 5 C -0.10 -1.47 4.26 -26.73 -0.11 -1.59 16 6 C -0.14 -2.11 4.25 -27.88 -0.12 -2.23 16 7 C 0.51 10.64 7.67 -10.98 -0.08 10.56 16 8 O -0.54 -13.91 15.56 5.56 0.09 -13.83 16 9 N -0.60 -12.73 2.46 -175.06 -0.43 -13.16 16 10 C 0.25 6.49 5.16 -5.20 -0.03 6.46 16 11 C -0.52 -15.03 9.39 -34.44 -0.32 -15.36 16 12 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.14 2.35 5.49 -4.04 -0.02 2.33 16 20 C -0.16 -2.31 5.95 -90.62 -0.54 -2.85 16 21 C -0.19 -2.05 9.18 -26.73 -0.25 -2.30 16 22 C -0.18 -2.00 10.25 -26.73 -0.27 -2.27 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.11 6.52 -51.93 -0.34 0.77 16 33 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.09 1.13 6.84 -51.93 -0.36 0.77 16 35 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 36 H 0.03 0.83 8.07 -51.92 -0.42 0.41 16 37 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 40 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 41 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 43 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 0.97 8.14 -51.94 -0.42 0.55 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -32.30 361.83 -9.15 -41.45 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.41 Total: -0.51 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.56 Total: -10.32 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.31 Total: -39.31 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.30 -9.15 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448909182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.369 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds