Wall clock time and date at job start Mon Mar 30 2020 07:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46974 * 2 1 4 4 C 1.53002 * 109.46964 * 120.00329 * 2 1 3 5 5 C 1.52996 * 109.46891 * 175.00107 * 4 2 1 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47598 * 90.00303 * 10 9 7 12 12 H 1.08005 * 119.99628 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00538 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99774 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00058 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47013 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46808 * 120.00120 * 15 13 11 18 18 H 1.48501 * 109.46891 * 240.00253 * 15 13 11 19 19 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 20 20 C 1.53004 * 109.46986 * 90.00387 * 19 9 7 21 21 C 1.52997 * 117.49514 * 243.61460 * 20 19 9 22 22 C 1.52997 * 60.00268 * 252.51458 * 21 20 19 23 23 H 1.08998 * 109.47250 * 299.99891 * 1 2 3 24 24 H 1.09004 * 109.47455 * 59.99817 * 1 2 3 25 25 H 1.08998 * 109.47252 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46592 * 240.00394 * 2 1 3 27 27 H 1.09000 * 109.46868 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47394 * 299.99876 * 3 2 1 29 29 H 1.08998 * 109.47043 * 59.99982 * 3 2 1 30 30 H 1.08992 * 109.47056 * 54.99761 * 4 2 1 31 31 H 1.08996 * 109.46698 * 294.99877 * 4 2 1 32 32 H 1.09001 * 109.47372 * 59.99964 * 5 4 2 33 33 H 1.09004 * 109.47108 * 299.99708 * 5 4 2 34 34 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 35 35 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 36 36 H 1.09008 * 109.47096 * 209.99661 * 10 9 7 37 37 H 1.09003 * 109.47776 * 329.99537 * 10 9 7 38 38 H 0.97002 * 119.99965 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.46971 * 209.99938 * 19 9 7 40 40 H 1.08993 * 109.47768 * 330.00002 * 19 9 7 41 41 H 1.09000 * 115.55217 * 29.32861 * 20 19 9 42 42 H 1.09003 * 117.50408 * 0.02562 * 21 20 19 43 43 H 1.09009 * 117.49806 * 145.01909 * 21 20 19 44 44 H 1.09001 * 117.49351 * 252.51715 * 22 21 20 45 45 H 1.08988 * 117.50123 * 107.49613 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 6 4.0748 -1.5518 2.4374 7 6 5.5767 -1.6605 2.3768 8 8 6.1797 -1.2058 1.4279 9 7 6.2496 -2.2630 3.3771 10 6 7.7096 -2.3682 3.3184 11 6 8.3272 -1.1580 3.9704 12 1 7.6952 -0.3873 4.3866 13 6 9.6988 -1.0345 4.0357 14 7 10.4684 -1.9726 3.5285 15 14 10.4642 0.4660 4.8433 16 1 9.3898 1.3678 5.3308 17 1 11.3065 0.0363 5.9883 18 1 11.3045 1.1864 3.8533 19 6 5.5211 -2.8128 4.5230 20 6 5.1490 -4.2695 4.2395 21 6 3.6609 -4.6150 4.1556 22 6 4.4824 -5.0605 5.3670 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6053 -1.7198 1.2951 31 1 1.7516 -0.1584 2.1369 32 1 3.9994 0.1675 1.1421 33 1 3.8531 -1.3940 0.3002 34 1 3.6402 -2.5504 2.4837 35 1 3.7864 -0.9887 3.3250 36 1 8.0306 -3.2675 3.8441 37 1 8.0285 -2.4225 2.2774 38 1 11.4334 -1.8856 3.5741 39 1 6.1513 -2.7650 5.4111 40 1 4.6140 -2.2319 4.6896 41 1 5.8292 -4.8088 3.5803 42 1 2.9469 -3.8044 4.3019 43 1 3.3617 -5.3816 3.4408 44 1 4.7238 -6.1203 5.4490 45 1 4.3091 -4.5433 6.3105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448909182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:31 Heat of formation + Delta-G solvation = -64.392405 kcal Electronic energy + Delta-G solvation = -20838.321705 eV Core-core repulsion = 17854.658856 eV Total energy + Delta-G solvation = -2983.662849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84001 -38.40846 -37.81281 -36.12380 -34.61885 -33.63247 -30.07188 -28.25692 -27.95679 -27.30499 -24.93196 -23.18032 -22.69575 -21.78271 -20.81195 -19.79027 -18.62114 -17.94127 -17.15976 -16.85486 -16.23771 -16.00951 -15.76440 -15.21094 -14.96424 -14.65949 -14.43294 -14.12800 -14.05562 -13.69083 -13.31407 -13.02728 -12.99688 -12.85802 -12.66277 -12.57256 -12.45196 -12.36314 -12.24486 -12.22567 -11.86175 -11.69271 -11.48356 -11.39091 -11.28008 -11.22020 -10.85878 -10.66381 -10.45641 -9.42471 -8.23553 -6.38803 1.34739 1.37334 1.49328 1.88344 2.29450 2.45081 2.99298 3.05638 3.67212 3.88858 3.93022 4.02196 4.06972 4.13833 4.19518 4.29098 4.34372 4.42745 4.66832 4.70514 4.77495 4.79880 4.85124 4.86794 4.89566 4.92164 4.99405 5.05428 5.09507 5.10529 5.14434 5.22344 5.27973 5.33790 5.35452 5.35722 5.45772 5.55918 5.58304 5.60700 5.86140 6.05711 6.69458 6.83057 7.27720 7.52650 8.83852 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.005058 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.868144 B = 5534.708771 C = 7040.880117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.104 4.104 5 C -0.101 4.101 6 C -0.124 4.124 7 C 0.492 3.508 8 O -0.603 6.603 9 N -0.602 5.602 10 C 0.262 3.738 11 C -0.542 4.542 12 H 0.053 0.947 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.969 3.031 16 H -0.266 1.266 17 H -0.268 1.268 18 H -0.282 1.282 19 C 0.143 3.857 20 C -0.196 4.196 21 C -0.162 4.162 22 C -0.163 4.163 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.018 0.982 37 H -0.007 1.007 38 H 0.267 0.733 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.925 -1.334 1.392 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.209 4.209 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.164 4.164 7 C 0.282 3.718 8 O -0.485 6.485 9 N -0.332 5.332 10 C 0.141 3.859 11 C -0.580 4.580 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.793 3.207 16 H -0.190 1.190 17 H -0.193 1.193 18 H -0.207 1.207 19 C 0.020 3.980 20 C -0.215 4.215 21 C -0.199 4.199 22 C -0.200 4.200 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.036 0.964 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.425 -1.161 0.899 21.476 hybrid contribution 1.513 0.481 -0.004 1.588 sum -19.912 -0.680 0.896 19.944 Atomic orbital electron populations 1.21798 0.93846 1.02182 1.02066 1.21130 0.96612 0.95978 0.98141 1.21908 1.00433 0.96528 1.02005 1.21610 0.92664 1.01484 0.98366 1.21348 0.96640 0.99786 0.96138 1.21755 0.88644 1.04430 1.01531 1.21623 0.91878 0.76846 0.81418 1.90618 1.72142 1.50007 1.35692 1.48211 1.07699 1.56090 1.21173 1.18668 0.76255 0.95853 0.95146 1.21744 0.92134 1.06334 1.37832 0.92836 1.25894 0.97580 0.99749 0.96049 1.70069 1.04958 1.35463 1.46464 0.85342 0.78323 0.78773 0.78216 1.18998 1.19286 1.20749 1.21220 0.96894 0.91976 0.87870 1.22648 0.97463 0.96458 1.04941 1.23190 0.91954 1.04002 1.00720 1.23011 1.02887 1.00382 0.93728 0.92148 0.92559 0.92051 0.92183 0.94156 0.92375 0.92160 0.90382 0.90782 0.93359 0.93512 0.86712 0.87276 0.96407 0.98919 0.92419 0.91154 0.87951 0.90516 0.86566 0.88270 0.88367 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.10 -1.83 2.92 -10.79 -0.03 -1.86 16 3 C -0.15 -3.00 8.95 71.98 0.64 -2.35 16 4 C -0.10 -1.94 4.68 30.59 0.14 -1.80 16 5 C -0.10 -2.78 4.26 30.59 0.13 -2.65 16 6 C -0.12 -3.49 4.25 29.85 0.13 -3.36 16 7 C 0.49 21.26 7.67 87.66 0.67 21.93 16 8 O -0.60 -32.73 15.56 -3.02 -0.05 -32.78 16 9 N -0.60 -26.47 2.46 -826.16 -2.03 -28.50 16 10 C 0.26 14.77 5.16 85.63 0.44 15.21 16 11 C -0.54 -32.23 9.39 25.60 0.24 -31.99 16 12 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 13 C 0.01 0.35 5.46 84.66 0.46 0.82 16 14 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 15 Si 0.97 45.87 29.54 68.60 2.03 47.89 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 C 0.14 4.57 5.49 86.38 0.47 5.04 16 20 C -0.20 -5.31 5.95 -10.79 -0.06 -5.37 16 21 C -0.16 -2.97 9.18 30.59 0.28 -2.69 16 22 C -0.16 -3.20 10.25 30.59 0.31 -2.89 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.04 0.96 6.56 -2.39 -0.02 0.95 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.54 6.52 -2.39 -0.02 1.52 16 33 H 0.05 1.45 8.10 -2.38 -0.02 1.43 16 34 H 0.11 2.60 6.84 -2.39 -0.02 2.58 16 35 H 0.11 2.53 7.40 -2.39 -0.02 2.51 16 36 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 37 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 40 H 0.10 2.51 6.17 -2.39 -0.01 2.49 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.12 1.64 7.87 -2.39 -0.02 1.62 16 43 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -75.39 361.83 5.65 -69.74 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.92 Total: 14.34 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.50 Total: -13.26 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.74 Total: -85.93 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.05 Total: -32.78 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.39 5.65 -69.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448909182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.350 kcal (2) G-P(sol) polarization free energy of solvation -75.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds