Wall clock time and date at job start Mon Mar 30 2020 07:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 C 1.52994 * 109.47347 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47347 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47405 * 305.00047 * 5 4 3 7 7 C 1.52996 * 109.47068 * 65.00368 * 5 4 3 8 8 C 1.50702 * 109.47159 * 185.00014 * 5 4 3 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 5 4 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 5 12 12 H 1.09009 * 110.01539 * 325.06844 * 11 10 8 13 13 C 1.53878 * 110.03122 * 86.45725 * 11 10 8 14 14 C 1.54262 * 106.59963 * 119.28491 * 13 11 10 15 15 C 1.54887 * 104.19527 * 23.61408 * 14 13 11 16 16 H 1.09004 * 110.76202 * 80.37003 * 15 14 13 17 17 C 1.50699 * 110.75630 * 203.74124 * 15 14 13 18 18 H 1.08006 * 120.00117 * 118.53869 * 17 15 14 19 19 C 1.37875 * 120.00047 * 298.54706 * 17 15 14 20 20 N 1.31507 * 119.99957 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00143 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47262 * 59.99074 * 21 19 17 23 23 H 1.48497 * 109.47373 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46803 * 299.99577 * 21 19 17 25 25 C 1.54265 * 110.03664 * 203.62302 * 11 10 8 26 26 H 1.08993 * 109.46806 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46641 * 299.99669 * 1 2 3 28 28 H 1.08997 * 109.46862 * 59.99755 * 1 2 3 29 29 H 1.09002 * 109.46641 * 240.00331 * 2 1 3 30 30 H 1.08997 * 109.46862 * 120.00245 * 2 1 3 31 31 H 1.09009 * 109.46866 * 59.99935 * 3 2 1 32 32 H 1.09003 * 109.47260 * 300.00619 * 3 2 1 33 33 H 1.09009 * 109.47154 * 60.00156 * 4 3 2 34 34 H 1.09003 * 109.47483 * 300.00527 * 4 3 2 35 35 H 1.09001 * 109.47551 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.46851 * 300.00074 * 7 5 4 37 37 H 1.09002 * 109.47575 * 59.99595 * 7 5 4 38 38 H 0.97000 * 120.00317 * 0.28382 * 10 8 5 39 39 H 1.09006 * 110.03088 * 238.57352 * 13 11 10 40 40 H 1.08999 * 110.02822 * 359.97438 * 13 11 10 41 41 H 1.09001 * 110.48389 * 142.28742 * 14 13 11 42 42 H 1.08992 * 110.49006 * 264.92906 * 14 13 11 43 43 H 0.97005 * 120.00427 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.48645 * 335.78701 * 25 11 10 45 45 H 1.09005 * 110.48236 * 98.42684 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6458 3.4235 -0.8422 7 6 3.6748 3.5697 1.3068 8 6 5.5820 2.8867 -0.1232 9 8 6.1852 1.8375 -0.2031 10 7 6.2546 4.0543 -0.1507 11 6 7.7141 4.0562 -0.2765 12 1 8.1354 3.2020 0.2537 13 6 8.1152 4.0051 -1.7612 14 6 8.9226 5.2888 -2.0440 15 6 9.4696 5.7069 -0.6566 16 1 10.3532 5.1234 -0.3977 17 6 9.7742 7.1824 -0.6250 18 1 9.2521 7.8270 0.0667 19 6 10.7192 7.7097 -1.4794 20 7 11.3551 6.9249 -2.3214 21 14 11.0973 9.5386 -1.4398 22 1 11.5857 9.9140 -0.0886 23 1 12.1424 9.8500 -2.4477 24 1 9.8644 10.3057 -1.7512 25 6 8.2919 5.3692 0.2911 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9338 0.9285 -0.8892 34 1 3.9331 0.9287 0.8908 35 1 4.0385 4.5973 1.3066 36 1 2.5884 3.5684 1.3959 37 1 4.1090 3.0312 2.1491 38 1 5.7722 4.8935 -0.0870 39 1 8.7319 3.1266 -1.9514 40 1 7.2239 3.9785 -2.3880 41 1 9.7432 5.0799 -2.7304 42 1 8.2743 6.0660 -2.4485 43 1 12.0203 7.2957 -2.9223 44 1 7.5416 6.1593 0.2638 45 1 8.6521 5.2188 1.3088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452556160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:18 Heat of formation + Delta-G solvation = -88.035195 kcal Electronic energy + Delta-G solvation = -20505.294838 eV Core-core repulsion = 17520.606760 eV Total energy + Delta-G solvation = -2984.688078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.85248 -37.36636 -36.23486 -33.80696 -33.32734 -31.84741 -28.87033 -28.13580 -26.98064 -25.28993 -23.91068 -22.49058 -21.09757 -19.95283 -19.42914 -18.97483 -16.77973 -16.56963 -15.91347 -15.54120 -14.97616 -14.62201 -14.35201 -14.11350 -13.82588 -13.44853 -13.34284 -12.78002 -12.59439 -12.36578 -12.31468 -11.90400 -11.77785 -11.48273 -11.13181 -11.11888 -11.08408 -10.95801 -10.91029 -10.79671 -10.61591 -10.59812 -10.28418 -9.93662 -9.51589 -9.41423 -9.17545 -8.81624 -8.55161 -8.36671 -6.00788 -4.04615 2.91527 3.30920 3.36280 3.37891 3.51331 4.43103 4.53938 4.67938 4.72507 4.92319 4.97034 5.01786 5.26207 5.31015 5.33692 5.45445 5.52256 5.58153 5.60124 5.68620 5.70030 5.75877 5.80171 5.85333 5.88152 5.97403 6.02766 6.20253 6.28171 6.34115 6.38623 6.61614 6.68065 6.76314 6.91870 6.96352 7.27837 7.34481 7.71990 7.86305 7.89751 8.02817 8.42425 8.54834 8.97203 9.59504 11.08264 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046159 B = 0.003080 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.458855 B = 9088.403441 C = 9324.086472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.112 4.112 6 H 0.094 0.906 7 C -0.145 4.145 8 C 0.511 3.489 9 O -0.547 6.547 10 N -0.718 5.718 11 C 0.137 3.863 12 H 0.078 0.922 13 C -0.134 4.134 14 C -0.100 4.100 15 C 0.052 3.948 16 H 0.031 0.969 17 C -0.515 4.515 18 H 0.055 0.945 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.396 0.604 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.674 -8.436 4.559 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.134 4.134 6 H 0.112 0.888 7 C -0.202 4.202 8 C 0.297 3.703 9 O -0.425 6.425 10 N -0.368 5.368 11 C 0.034 3.966 12 H 0.096 0.904 13 C -0.173 4.173 14 C -0.138 4.138 15 C 0.033 3.967 16 H 0.050 0.950 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.159 4.159 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.231 0.769 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.077 -9.190 4.358 20.742 hybrid contribution 0.043 1.468 -0.109 1.473 sum -18.034 -7.722 4.249 20.072 Atomic orbital electron populations 1.21780 0.96066 1.01444 1.01692 1.21529 0.95576 0.97057 1.02176 1.21694 0.95346 0.96772 1.02045 1.21397 0.94459 0.94403 1.03500 1.21342 0.92620 0.99097 1.00328 0.88795 1.21820 1.01958 1.00408 0.96030 1.20623 0.89671 0.84016 0.76005 1.90671 1.70322 1.31540 1.49978 1.46373 1.08559 1.08131 1.73746 1.21854 0.77905 0.99762 0.97116 0.90392 1.22646 0.99567 1.00370 0.94699 1.22304 0.97833 0.92853 1.00837 1.19541 0.91435 0.96029 0.89661 0.95047 1.21054 1.21592 0.92799 1.19914 0.92721 1.24978 0.95866 0.97623 0.95438 1.69948 1.25698 1.34831 1.22179 0.86698 0.77970 0.85810 0.77717 1.20320 1.21355 1.20348 1.22756 0.99996 0.93769 0.99386 0.92934 0.92845 0.92822 0.91994 0.92024 0.91768 0.92051 0.91165 0.91386 0.92080 0.91454 0.92137 0.76931 0.92677 0.93308 0.91256 0.93535 0.92994 0.92122 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -0.99 4.97 -26.74 -0.13 -1.12 16 4 C -0.10 -1.06 4.03 -26.74 -0.11 -1.16 16 5 C -0.11 -1.22 2.72 -91.77 -0.25 -1.47 16 6 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 7 C -0.14 -1.29 8.85 37.16 0.33 -0.96 16 8 C 0.51 7.77 7.14 -10.98 -0.08 7.69 16 9 O -0.55 -10.48 15.60 5.55 0.09 -10.39 16 10 N -0.72 -10.89 4.89 -52.72 -0.26 -11.15 16 11 C 0.14 2.53 3.23 -66.81 -0.22 2.32 16 12 H 0.08 1.53 7.61 -51.92 -0.39 1.13 16 13 C -0.13 -2.67 6.59 -25.61 -0.17 -2.84 16 14 C -0.10 -2.32 5.57 -25.08 -0.14 -2.46 16 15 C 0.05 1.27 2.82 -89.78 -0.25 1.02 16 16 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 17 C -0.52 -13.83 8.54 -34.44 -0.29 -14.12 16 18 H 0.05 1.43 7.78 -52.48 -0.41 1.02 16 19 C 0.06 1.72 5.33 -17.82 -0.10 1.63 16 20 N -0.89 -25.33 12.02 55.43 0.67 -24.66 16 21 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.12 -2.39 5.94 -25.07 -0.15 -2.54 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.48 6.57 -51.92 -0.34 0.14 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.85 7.96 -51.92 -0.41 0.44 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.40 5.07 7.77 -40.82 -0.32 4.75 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 41 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 42 H 0.05 1.10 8.04 -51.93 -0.42 0.69 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -29.80 353.73 -8.97 -38.77 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.42 Total: 1.92 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -1.35 Total: -15.81 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.41 Total: -35.81 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.80 -8.97 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452556160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.267 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds