Wall clock time and date at job start Mon Mar 30 2020 07:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 C 1.52994 * 109.47347 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47347 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47405 * 305.00047 * 5 4 3 7 7 C 1.52996 * 109.47068 * 65.00368 * 5 4 3 8 8 C 1.50702 * 109.47159 * 185.00014 * 5 4 3 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 5 4 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 5 12 12 H 1.09009 * 110.01539 * 325.06844 * 11 10 8 13 13 C 1.53878 * 110.03122 * 86.45725 * 11 10 8 14 14 C 1.54262 * 106.59963 * 119.28491 * 13 11 10 15 15 C 1.54887 * 104.19527 * 23.61408 * 14 13 11 16 16 H 1.09004 * 110.76202 * 80.37003 * 15 14 13 17 17 C 1.50699 * 110.75630 * 203.74124 * 15 14 13 18 18 H 1.08006 * 120.00117 * 118.53869 * 17 15 14 19 19 C 1.37875 * 120.00047 * 298.54706 * 17 15 14 20 20 N 1.31507 * 119.99957 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00143 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47262 * 59.99074 * 21 19 17 23 23 H 1.48497 * 109.47373 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46803 * 299.99577 * 21 19 17 25 25 C 1.54265 * 110.03664 * 203.62302 * 11 10 8 26 26 H 1.08993 * 109.46806 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46641 * 299.99669 * 1 2 3 28 28 H 1.08997 * 109.46862 * 59.99755 * 1 2 3 29 29 H 1.09002 * 109.46641 * 240.00331 * 2 1 3 30 30 H 1.08997 * 109.46862 * 120.00245 * 2 1 3 31 31 H 1.09009 * 109.46866 * 59.99935 * 3 2 1 32 32 H 1.09003 * 109.47260 * 300.00619 * 3 2 1 33 33 H 1.09009 * 109.47154 * 60.00156 * 4 3 2 34 34 H 1.09003 * 109.47483 * 300.00527 * 4 3 2 35 35 H 1.09001 * 109.47551 * 179.97438 * 7 5 4 36 36 H 1.09003 * 109.46851 * 300.00074 * 7 5 4 37 37 H 1.09002 * 109.47575 * 59.99595 * 7 5 4 38 38 H 0.97000 * 120.00317 * 0.28382 * 10 8 5 39 39 H 1.09006 * 110.03088 * 238.57352 * 13 11 10 40 40 H 1.08999 * 110.02822 * 359.97438 * 13 11 10 41 41 H 1.09001 * 110.48389 * 142.28742 * 14 13 11 42 42 H 1.08992 * 110.49006 * 264.92906 * 14 13 11 43 43 H 0.97005 * 120.00427 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.48645 * 335.78701 * 25 11 10 45 45 H 1.09005 * 110.48236 * 98.42684 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6458 3.4235 -0.8422 7 6 3.6748 3.5697 1.3068 8 6 5.5820 2.8867 -0.1232 9 8 6.1852 1.8375 -0.2031 10 7 6.2546 4.0543 -0.1507 11 6 7.7141 4.0562 -0.2765 12 1 8.1354 3.2020 0.2537 13 6 8.1152 4.0051 -1.7612 14 6 8.9226 5.2888 -2.0440 15 6 9.4696 5.7069 -0.6566 16 1 10.3532 5.1234 -0.3977 17 6 9.7742 7.1824 -0.6250 18 1 9.2521 7.8270 0.0667 19 6 10.7192 7.7097 -1.4794 20 7 11.3551 6.9249 -2.3214 21 14 11.0973 9.5386 -1.4398 22 1 11.5857 9.9140 -0.0886 23 1 12.1424 9.8500 -2.4477 24 1 9.8644 10.3057 -1.7512 25 6 8.2919 5.3692 0.2911 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9338 0.9285 -0.8892 34 1 3.9331 0.9287 0.8908 35 1 4.0385 4.5973 1.3066 36 1 2.5884 3.5684 1.3959 37 1 4.1090 3.0312 2.1491 38 1 5.7722 4.8935 -0.0870 39 1 8.7319 3.1266 -1.9514 40 1 7.2239 3.9785 -2.3880 41 1 9.7432 5.0799 -2.7304 42 1 8.2743 6.0660 -2.4485 43 1 12.0203 7.2957 -2.9223 44 1 7.5416 6.1593 0.2638 45 1 8.6521 5.2188 1.3088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452556160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:17 Heat of formation + Delta-G solvation = -104.110607 kcal Electronic energy + Delta-G solvation = -20505.991920 eV Core-core repulsion = 17520.606760 eV Total energy + Delta-G solvation = -2985.385160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11889 -38.88680 -37.16895 -35.31635 -34.39202 -33.51620 -30.03631 -29.61383 -28.52673 -26.22568 -25.66172 -23.46011 -21.87796 -21.44211 -20.91224 -20.48614 -18.48643 -17.91956 -17.07156 -16.69904 -16.56693 -16.13874 -15.71354 -15.31408 -14.74479 -14.49802 -14.25975 -14.14732 -13.99410 -13.63697 -13.47360 -13.07498 -12.99908 -12.76128 -12.66459 -12.48243 -12.44142 -12.16578 -12.09731 -11.85945 -11.80469 -11.66531 -11.50084 -11.38801 -11.30056 -11.09616 -10.82624 -10.60211 -10.45526 -9.96060 -8.09369 -6.20252 1.44226 1.45290 1.52765 1.71240 2.29194 2.46027 3.21264 3.70930 3.79056 3.95307 3.97002 4.04034 4.19321 4.24198 4.32617 4.33006 4.54397 4.65020 4.69468 4.77545 4.82480 4.88160 4.91548 4.96101 5.02272 5.02823 5.05586 5.07837 5.14059 5.15467 5.25175 5.29280 5.33449 5.40945 5.41079 5.50811 5.56516 5.66131 5.69639 5.93211 5.99390 6.37199 6.66868 6.90311 7.34627 7.47708 8.98933 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046159 B = 0.003080 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.458855 B = 9088.403441 C = 9324.086472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.097 4.097 5 C -0.104 4.104 6 H 0.116 0.884 7 C -0.142 4.142 8 C 0.507 3.493 9 O -0.591 6.591 10 N -0.709 5.709 11 C 0.150 3.850 12 H 0.066 0.934 13 C -0.124 4.124 14 C -0.089 4.089 15 C 0.040 3.960 16 H -0.003 1.003 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.010 3.990 20 N -0.921 5.921 21 Si 0.955 3.045 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.268 1.268 25 C -0.106 4.106 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.412 0.588 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.259 0.741 44 H 0.076 0.924 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.269 -7.217 5.392 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.151 4.151 4 C -0.135 4.135 5 C -0.125 4.125 6 H 0.134 0.866 7 C -0.199 4.199 8 C 0.295 3.705 9 O -0.471 6.471 10 N -0.360 5.360 11 C 0.045 3.955 12 H 0.084 0.916 13 C -0.163 4.163 14 C -0.127 4.127 15 C 0.021 3.979 16 H 0.016 0.984 17 C -0.567 4.567 18 H 0.078 0.922 19 C -0.189 4.189 20 N -0.560 5.560 21 Si 0.781 3.219 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.193 1.193 25 C -0.144 4.144 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.249 0.751 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.708 -7.949 5.208 22.785 hybrid contribution 0.886 1.036 -0.371 1.413 sum -19.822 -6.913 4.837 21.543 Atomic orbital electron populations 1.21761 0.94954 1.01864 1.02181 1.21545 0.96540 0.96885 1.01657 1.21647 0.93127 0.97158 1.03121 1.21363 0.96332 0.93995 1.01818 1.21382 0.88884 0.99738 1.02452 0.86590 1.21840 1.03536 1.00365 0.94150 1.21470 0.91507 0.83004 0.74469 1.90659 1.71618 1.33075 1.51782 1.46195 1.07045 1.09211 1.73573 1.21446 0.80084 0.98520 0.95498 0.91613 1.22521 0.99387 0.98157 0.96199 1.22072 0.96976 0.94177 0.99511 1.19528 0.92058 0.94684 0.91599 0.98436 1.21453 1.21541 0.94044 1.19706 0.92163 1.25802 0.95883 1.02007 0.95204 1.70098 1.26301 1.36676 1.22970 0.85661 0.77924 0.80599 0.77756 1.19638 1.21499 1.19276 1.22557 0.98506 0.94725 0.98627 0.92647 0.92180 0.92462 0.92790 0.92422 0.90342 0.91158 0.93276 0.92801 0.91155 0.88996 0.93113 0.75107 0.93433 0.92004 0.94420 0.94208 0.93198 0.90575 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.13 -1.81 5.93 30.60 0.18 -1.63 16 3 C -0.11 -1.56 4.97 30.59 0.15 -1.41 16 4 C -0.10 -1.93 4.03 30.59 0.12 -1.81 16 5 C -0.10 -1.99 2.72 -11.54 -0.03 -2.02 16 6 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 7 C -0.14 -2.04 8.85 71.98 0.64 -1.41 16 8 C 0.51 14.72 7.14 87.66 0.63 15.34 16 9 O -0.59 -22.58 15.60 -3.04 -0.05 -22.62 16 10 N -0.71 -20.14 4.89 -439.09 -2.15 -22.28 16 11 C 0.15 5.41 3.23 45.72 0.15 5.55 16 12 H 0.07 2.58 7.61 -2.38 -0.02 2.56 16 13 C -0.12 -4.93 6.59 31.32 0.21 -4.72 16 14 C -0.09 -4.21 5.57 31.67 0.18 -4.03 16 15 C 0.04 1.99 2.82 -10.25 -0.03 1.96 16 16 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 17 C -0.53 -28.41 8.54 25.60 0.22 -28.19 16 18 H 0.06 3.09 7.78 -2.91 -0.02 3.07 16 19 C 0.01 0.53 5.33 84.66 0.45 0.99 16 20 N -0.92 -53.74 12.02 21.45 0.26 -53.48 16 21 Si 0.95 42.96 29.54 68.60 2.03 44.98 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C -0.11 -4.10 5.94 31.67 0.19 -3.91 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.88 6.57 -2.38 -0.02 0.87 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 1.18 7.96 -2.38 -0.02 1.16 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 0.91 7.57 -2.39 -0.02 0.89 16 36 H 0.09 0.92 6.57 -2.39 -0.02 0.90 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.41 9.26 7.77 -92.71 -0.72 8.54 16 39 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.06 2.28 7.92 -2.39 -0.02 2.26 16 41 H 0.04 1.99 7.37 -2.39 -0.02 1.97 16 42 H 0.04 1.90 8.04 -2.39 -0.02 1.88 16 43 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 44 H 0.08 2.70 7.63 -2.39 -0.02 2.68 16 45 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -65.48 353.73 4.06 -61.41 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.21 Total: 18.26 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 3.76 Total: -26.26 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.89 Total: -75.76 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -65.48 4.06 -61.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452556160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.700 kcal (2) G-P(sol) polarization free energy of solvation -65.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds