Wall clock time and date at job start Mon Mar 30 2020 07:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47027 * 2 1 4 4 C 1.52999 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47006 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47667 * 54.99543 * 5 4 3 7 7 C 1.53003 * 109.46799 * 294.99723 * 5 4 3 8 8 C 1.50703 * 109.47273 * 174.99904 * 5 4 3 9 9 O 1.21279 * 119.99561 * 359.97438 * 8 5 4 10 10 N 1.34774 * 119.99957 * 179.97438 * 8 5 4 11 11 C 1.46504 * 119.99597 * 179.97438 * 10 8 5 12 12 H 1.08998 * 110.05600 * 325.03877 * 11 10 8 13 13 C 1.53876 * 110.03266 * 86.45674 * 11 10 8 14 14 C 1.54261 * 106.59990 * 119.28382 * 13 11 10 15 15 C 1.54888 * 104.19672 * 23.60631 * 14 13 11 16 16 H 1.09005 * 110.75648 * 80.37263 * 15 14 13 17 17 C 1.50700 * 110.75900 * 203.74240 * 15 14 13 18 18 H 1.08000 * 119.99960 * 118.54346 * 17 15 14 19 19 C 1.37879 * 120.00147 * 298.54740 * 17 15 14 20 20 N 1.31519 * 119.99847 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00119 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46835 * 60.00443 * 21 19 17 23 23 H 1.48495 * 109.47103 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47436 * 300.00696 * 21 19 17 25 25 C 1.54267 * 110.02925 * 203.62194 * 11 10 8 26 26 H 1.09002 * 109.46602 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46726 * 299.99269 * 1 2 3 28 28 H 1.08997 * 109.47380 * 59.99975 * 1 2 3 29 29 H 1.09005 * 109.46811 * 239.99999 * 2 1 3 30 30 H 1.08997 * 109.47380 * 120.00025 * 2 1 3 31 31 H 1.09001 * 109.46843 * 60.00212 * 3 2 1 32 32 H 1.09005 * 109.47009 * 300.00537 * 3 2 1 33 33 H 1.08992 * 109.47433 * 59.99884 * 4 3 2 34 34 H 1.08997 * 109.46884 * 299.99806 * 4 3 2 35 35 H 1.09000 * 109.47225 * 180.02562 * 7 5 4 36 36 H 1.09004 * 109.47196 * 299.99683 * 7 5 4 37 37 H 1.08995 * 109.47297 * 60.00258 * 7 5 4 38 38 H 0.96997 * 119.99950 * 359.97438 * 10 8 5 39 39 H 1.08998 * 110.02768 * 238.56979 * 13 11 10 40 40 H 1.08994 * 110.03051 * 359.97438 * 13 11 10 41 41 H 1.09000 * 110.48928 * 142.28640 * 14 13 11 42 42 H 1.08999 * 110.48469 * 264.93049 * 14 13 11 43 43 H 0.97002 * 119.99821 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.48597 * 335.78333 * 25 11 10 45 45 H 1.08994 * 110.48679 * 98.42860 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6456 3.4237 0.8422 7 6 3.6746 3.5698 -1.3068 8 6 5.5819 2.8869 0.1232 9 8 6.1850 1.8377 0.2032 10 7 6.2548 4.0544 0.1446 11 6 7.7149 4.0561 0.2649 12 1 8.0382 3.2349 0.9046 13 6 8.3587 3.9254 -1.1266 14 6 9.2079 5.1953 -1.3403 15 6 9.5167 5.6916 0.0940 16 1 10.3418 5.1274 0.5288 17 6 9.8185 7.1681 0.0949 18 1 9.1910 7.8472 0.6530 19 6 10.8957 7.6520 -0.6168 20 7 11.6596 6.8251 -1.2968 21 14 11.2694 9.4823 -0.6162 22 1 11.5260 9.9346 0.7747 23 1 12.4694 9.7427 -1.4513 24 1 10.1095 10.2245 -1.1720 25 6 8.1954 5.4010 0.8482 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9336 0.9286 0.8891 35 1 4.0382 4.5973 -1.3067 36 1 4.1090 3.0312 -2.1492 37 1 2.5883 3.5685 -1.3960 38 1 5.7725 4.8934 0.0803 39 1 8.9944 3.0407 -1.1622 40 1 7.5848 3.8602 -1.8913 41 1 10.1309 4.9529 -1.8671 42 1 8.6400 5.9460 -1.8897 43 1 12.4172 7.1656 -1.7978 44 1 7.4639 6.1850 0.6522 45 1 8.3795 5.3086 1.9185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452556161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:21 Heat of formation + Delta-G solvation = -104.048624 kcal Electronic energy + Delta-G solvation = -20531.236408 eV Core-core repulsion = 17545.853935 eV Total energy + Delta-G solvation = -2985.382472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12048 -38.88410 -37.16899 -35.31605 -34.38867 -33.51789 -30.02603 -29.63597 -28.51177 -26.25010 -25.64528 -23.45335 -21.87226 -21.44548 -20.95922 -20.43759 -18.48481 -17.97916 -16.98151 -16.64389 -16.57542 -16.20764 -15.77513 -15.27394 -14.73711 -14.51899 -14.22146 -14.14783 -13.98743 -13.64984 -13.49569 -13.05484 -13.02822 -12.77322 -12.63290 -12.49126 -12.43956 -12.16717 -12.09765 -11.85740 -11.80386 -11.66686 -11.50284 -11.38681 -11.29882 -11.09632 -10.82617 -10.59767 -10.45365 -9.96243 -8.09370 -6.20225 1.44275 1.45261 1.52785 1.71115 2.29460 2.46089 3.21246 3.70800 3.78949 3.95322 3.97124 4.04296 4.19474 4.24279 4.32583 4.32899 4.54348 4.64575 4.69417 4.77863 4.82354 4.87678 4.91489 4.96026 5.02134 5.02603 5.05929 5.07697 5.14228 5.15501 5.25236 5.29148 5.33332 5.41058 5.41178 5.50935 5.56646 5.66197 5.69725 5.93282 5.99440 6.37232 6.66950 6.90332 7.34715 7.47708 8.98918 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.048583 B = 0.003079 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.190472 B = 9091.547383 C = 9289.015404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.097 4.097 5 C -0.102 4.102 6 H 0.120 0.880 7 C -0.143 4.143 8 C 0.507 3.493 9 O -0.591 6.591 10 N -0.709 5.709 11 C 0.149 3.851 12 H 0.066 0.934 13 C -0.123 4.123 14 C -0.089 4.089 15 C 0.040 3.960 16 H -0.003 1.003 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.010 3.990 20 N -0.921 5.921 21 Si 0.955 3.045 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.268 1.268 25 C -0.106 4.106 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.412 0.588 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.259 0.741 44 H 0.076 0.924 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 -7.028 1.551 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.150 4.150 4 C -0.135 4.135 5 C -0.123 4.123 6 H 0.138 0.862 7 C -0.200 4.200 8 C 0.295 3.705 9 O -0.471 6.471 10 N -0.360 5.360 11 C 0.044 3.956 12 H 0.084 0.916 13 C -0.162 4.162 14 C -0.127 4.127 15 C 0.021 3.979 16 H 0.016 0.984 17 C -0.567 4.567 18 H 0.078 0.922 19 C -0.189 4.189 20 N -0.560 5.560 21 Si 0.781 3.219 22 H -0.196 1.196 23 H -0.215 1.215 24 H -0.193 1.193 25 C -0.144 4.144 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.249 0.751 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.282 -7.767 1.499 22.705 hybrid contribution 0.939 1.021 -0.216 1.404 sum -20.343 -6.746 1.283 21.471 Atomic orbital electron populations 1.21760 0.94951 1.01859 1.02186 1.21546 0.96541 0.96900 1.01649 1.21647 0.93106 0.97148 1.03142 1.21362 0.96347 0.93992 1.01812 1.21377 0.88888 0.99727 1.02346 0.86222 1.21847 1.03546 1.00321 0.94296 1.21474 0.91510 0.83008 0.74478 1.90658 1.71707 1.33038 1.51728 1.46194 1.06961 1.09235 1.73634 1.21446 0.79718 0.98379 0.96021 0.91593 1.22512 0.98715 0.98142 0.96827 1.22069 0.97005 0.94249 0.99376 1.19529 0.91696 0.94679 0.91965 0.98442 1.21453 1.12042 0.93430 1.29817 0.92170 1.25804 0.96050 1.01880 0.95163 1.70104 1.17600 1.36086 1.32249 0.85659 0.77542 0.80621 0.78109 1.19637 1.21500 1.19282 1.22560 0.98446 0.94492 0.98949 0.92661 0.92350 0.92278 0.92582 0.92654 0.90939 0.90512 0.93066 0.93034 0.91285 0.93434 0.88895 0.75103 0.93484 0.92014 0.94434 0.94208 0.93203 0.90581 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.13 -1.81 5.93 30.59 0.18 -1.63 16 3 C -0.11 -1.55 4.97 30.59 0.15 -1.40 16 4 C -0.10 -1.92 4.03 30.59 0.12 -1.80 16 5 C -0.10 -1.96 2.73 -11.54 -0.03 -1.99 16 6 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.14 -2.20 8.84 71.98 0.64 -1.56 16 8 C 0.51 14.70 7.14 87.66 0.63 15.32 16 9 O -0.59 -22.56 15.60 -3.03 -0.05 -22.61 16 10 N -0.71 -20.13 4.89 -439.09 -2.15 -22.27 16 11 C 0.15 5.40 3.22 45.72 0.15 5.55 16 12 H 0.07 2.58 7.61 -2.39 -0.02 2.57 16 13 C -0.12 -4.90 6.59 31.32 0.21 -4.69 16 14 C -0.09 -4.19 5.57 31.67 0.18 -4.01 16 15 C 0.04 1.99 2.82 -10.25 -0.03 1.96 16 16 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 17 C -0.53 -28.40 8.54 25.60 0.22 -28.18 16 18 H 0.06 3.09 7.78 -2.91 -0.02 3.07 16 19 C 0.01 0.53 5.33 84.65 0.45 0.98 16 20 N -0.92 -53.72 12.02 21.45 0.26 -53.46 16 21 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C -0.11 -4.11 5.94 31.67 0.19 -3.92 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.89 6.57 -2.38 -0.02 0.87 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.20 7.95 -2.39 -0.02 1.18 16 35 H 0.07 0.98 7.56 -2.39 -0.02 0.96 16 36 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.09 0.99 6.57 -2.39 -0.02 0.98 16 38 H 0.41 9.26 7.76 -92.71 -0.72 8.54 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 2.28 7.92 -2.39 -0.02 2.26 16 41 H 0.04 1.98 7.37 -2.39 -0.02 1.96 16 42 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 43 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.08 2.70 7.63 -2.38 -0.02 2.68 16 45 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -65.47 353.70 4.07 -61.40 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.21 Total: 18.30 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 3.76 Total: -26.35 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.89 Total: -75.73 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.61 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -65.47 4.07 -61.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452556161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.650 kcal (2) G-P(sol) polarization free energy of solvation -65.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds